Prupe.6G152600_v2.0.a1

EF hand

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000286
Physical Location & Seq
Reverse (-)
13265435 .. 13265689
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G152600.1

Sequence Viewer

Length: 255 bp
ATGGAAGAACTACATGCAGCAGCCTTAGCCTACTATTCCAATGGTTCTCCGGAACGTCAGCGTCTGGCATGGTCTTTCTTCCAATCCATGGACACAAACAACGATGGCCGAATCAGCTCCGCAGAGTTTTATGAATTTCTGCAGCAAAGTGGTTACAGCTGGATCGTCAACGACCCCAGTTTCTTCACGAAACTAGATCGAAACCGCGACGGTGGCCTGGATTTTTATGAAGTGCTCACTTATATAGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_8 ZZ

Protein Analysis

85

Amino Acids

9.79

Weight (kDa)

4.42

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13440 AT4G13440
fragaria_vesca FvH4_3g15000 FvH4_3g15000 FvH4_3g15020 FvH4_4g04740 FvH4_4g04740 FvH4_4g04740 FvH4_4g04760 FvH4_4g04850 FvH4_4g04860 FvH4_4g04900 FvH4_4g04980 FvH4_4g04980 FvH4_4g04990 FvH4_4g04990
malus_domestica MD05G1227800.v1.1 MD05G1228500.v1.1
prunus_persica Prupe.1G049600_v2.0.a1 Prupe.1G049700_v2.0.a1 Prupe.1G049800_v2.0.a1 Prupe.1G050000_v2.0.a1 Prupe.1G050100_v2.0.a1 Prupe.4G134500_v2.0.a1 Prupe.6G152600_v2.0.a1
pyrus_communis pycom13g19680 pycom13g19690
rosa_chinensis RchiOBHm_Chr4g0395461 RchiOBHm_Chr4g0395551 RchiOBHm_Chr4g0395571 RchiOBHm_Chr4g0395741 RchiOBHm_Chr4g0395751 RchiOBHm_Chr4g0395781 RchiOBHm_Chr4g0395801 RchiOBHm_Chr4g0397571 RchiOBHm_Chr5g0024631 RchiOBHm_Chr5g0024661
rosa_laevigata RLG00000009594 RLG00000009595 RLG00000009596 RLG00000009607 RLG00000009608 RLG00000009610 RLG00000009612 RLG00000009621 RLG00000032811
rosa_multiflora Rmu_co8376147.1_g000001 Rmu_sc0000041.1_g000020 Rmu_sc0001103.1_g000038 Rmu_sc0001757.1_g000010 Rmu_sc0004598.1_g000029 Rmu_sc0004849.1_g000001 Rmu_sc0005389.1_g000025 Rmu_sc0005431.1_g000010 Rmu_sc0005431.1_g000020 Rmu_sc0005653.1_g000008 Rmu_sc0008351.1_g000022 Rmu_sc0011701.1_g000009
rosa_roxburghii Rroxscaffold_1G00054620 Rroxscaffold_1G00054630 Rroxscaffold_1G00054640 Rroxscaffold_5G00340400 Rroxscaffold_5G00340540 Rroxscaffold_5G00340550 Rroxscaffold_5G00340590 Rroxscaffold_5G00340630 Rroxscaffold_5G00340640 Rroxscaffold_5G00340760
rosa_rugosa Rorug03G0342500 Rorug03G0354500 Rorug03G0355100 Rorug03G0355200 Rorug03G0355300 Rorug03G0356100 Rorug03G0356400 Rorug03G0356500 Rorug05G0084400
rosa_samantha Rh4AG060000 Rh4AG060900 Rh4AG061200 Rh4BG058600 Rh4BG060300 Rh4BG060500 Rh4BG061200 Rh4BG061400 Rh4BG061700 Rh4BG062000 Rh4BG062100 Rh4BG077000 Rh4CG064400 Rh4CG064600 Rh4CG065900 Rh4CG066000 Rh4CG066300 Rh4CG067400 Rh4CG068000 Rh4CG068300 Rh4CG068400 Rh4CG084600 Rh4DG056100 Rh4DG056200 Rh4DG056600 Rh4DG056800 Rh4DG056900 Rh4DG057000 Rh4DG072000 Rh5BG173500 Rh5CG189600 Rh5CG190000
rosa_wichuraiana Rw0G006720 Rw0G022980 Rw0G023000 Rw2G038350 Rw4G004810 Rw4G004850 Rw4G004870 Rw4G004880 Rw4G004990 Rw4G005000 Rw4G005080 Rw4G005110 Rw4G005120 Rw4G005130 Rw4G006450 Rw5G015940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 88
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 2 cut(s) 120, 205
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 88
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 2 cut(s) 117, 159
AluI AGCT 2 cut(s) 117, 159
Alw21I GWGCWC 1 cut(s) 237
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 64
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 2 cut(s) 106, 214
ApeKI GCWGC 3 cut(s) 17, 20, 142
ApoI RAATTY 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 29, 32, 154
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 218
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 18, 21, 143
BlsI GCNGC 3 cut(s) 19, 22, 144
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BmrI ACTGGG 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 177
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 3 cut(s) 29, 32, 154
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 108, 216
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 88
BsnI GGCC 2 cut(s) 108, 216
Bsp1286I GDGCHC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 2 cut(s) 162, 196
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 2 cut(s) 120, 205
BspANI GGCC 2 cut(s) 108, 216
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 2 cut(s) 162, 196
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 2 cut(s) 165, 199
BstMBI GATC 2 cut(s) 162, 196
BstMWI GCNNNNNNNGC 3 cut(s) 26, 114, 213
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 140
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 29, 32, 154
BsuRI GGCC 2 cut(s) 108, 216
BtgI CCRYGG 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 64
CseI GACGC 1 cut(s) 50
CviAII CATG 3 cut(s) 14, 69, 88
CviJI RGCY 6 cut(s) 23, 29, 108, 117, 159, 216
CviKI_1 RGCY 6 cut(s) 23, 29, 108, 117, 159, 216
DdeI CTNAG 1 cut(s) 25
DpnI GATC 2 cut(s) 164, 198
DpnII GATC 2 cut(s) 162, 196
EaeI YGGCCR 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 17, 72, 91
FaiI YATR 7 cut(s) 15, 70, 89, 132, 228, 243, 245
FatI CATG 3 cut(s) 13, 68, 87
Fnu4HI GCNGC 3 cut(s) 18, 21, 143
Fsp4HI GCNGC 3 cut(s) 18, 21, 143
FspBI CTAG 1 cut(s) 194
GluI GCNGC 3 cut(s) 18, 21, 143
HaeIII GGCC 2 cut(s) 108, 216
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 50
Hin1II CATG 3 cut(s) 17, 72, 91
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 50, 187
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 17, 142
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 114, 213
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 3 cut(s) 17, 72, 91
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 2 cut(s) 162, 196
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 6 cut(s) 50, 63, 145, 190, 203, 230
Lsp1109I GCAGC 3 cut(s) 29, 32, 154
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 164, 198
MboI GATC 2 cut(s) 162, 196
MboII GAAGA 3 cut(s) 17, 70, 175
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 134
MroI TCCGGA 1 cut(s) 49
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 26, 114, 213
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 162, 196
NlaIII CATG 3 cut(s) 17, 72, 91
NspI RCATGY 1 cut(s) 17
PfeI GAWTC 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 3 cut(s) 19, 22, 144
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 159
SatI GCNGC 3 cut(s) 18, 21, 143
Sau3AI GATC 2 cut(s) 162, 196
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 237
SetI ASST 3 cut(s) 58, 119, 161
SfcI CTRYAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 120, 205
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 199
TasI AATT 1 cut(s) 134
TfiI GAWTC 1 cut(s) 111
TseI GCWGC 3 cut(s) 17, 20, 142
TspDTI ATGAA 2 cut(s) 147, 243
Van91I CCANNNNNTGG 1 cut(s) 88
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 17
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.