Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000286

Physical Location & Seq

Genomic Coordinates Forward (+)

12794551 .. 12795849

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG068400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGACACAAACGGTGATAAACGGATCAGCTACTCCGAGTTCAACGACTTTCTGGAACAAAGTGGCCACAGATGGATTCTCAATGACCCAAACTTCTTCAAAAAGCTCGACCGCAACCGCGATGGAGGCCTGGATTTCGAGGAAGTGCTCACTTTCTACTACATCATCAAAACAAGGCGTGTCATGTGCCGAGGGTGCAGAGCAATGGCTCCACAGCCACAGAGTACTATAGTGGTTTATAACAATTACAACGGTCAACCTATACCTGAAAAGAAAAAATGGTACCAGTCATTTCATCTATTGGAGGCCGGTCTTGCTGCCGCAGGTTTGGTTACTAATTGTGCTATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032042 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034357 GO:0034641 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIY-YIG MutS_I MutS_V

Protein Analysis

117

Amino Acids

13.59

Weight (kDa)

8.46

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13440 AT4G13440
fragaria_vesca	FvH4_3g15000 FvH4_3g15000 FvH4_3g15020 FvH4_4g04740 FvH4_4g04740 FvH4_4g04740 FvH4_4g04760 FvH4_4g04850 FvH4_4g04860 FvH4_4g04900 FvH4_4g04980 FvH4_4g04980 FvH4_4g04990 FvH4_4g04990
malus_domestica	MD05G1227800.v1.1 MD05G1228500.v1.1
prunus_persica	Prupe.1G049600_v2.0.a1 Prupe.1G049700_v2.0.a1 Prupe.1G049800_v2.0.a1 Prupe.1G050000_v2.0.a1 Prupe.1G050100_v2.0.a1 Prupe.4G134500_v2.0.a1 Prupe.6G152600_v2.0.a1
pyrus_communis	pycom13g19680 pycom13g19690
rosa_chinensis	RchiOBHm_Chr4g0395461 RchiOBHm_Chr4g0395551 RchiOBHm_Chr4g0395571 RchiOBHm_Chr4g0395741 RchiOBHm_Chr4g0395751 RchiOBHm_Chr4g0395781 RchiOBHm_Chr4g0395801 RchiOBHm_Chr4g0397571 RchiOBHm_Chr5g0024631 RchiOBHm_Chr5g0024661
rosa_laevigata	RLG00000009594 RLG00000009595 RLG00000009596 RLG00000009607 RLG00000009608 RLG00000009610 RLG00000009612 RLG00000009621 RLG00000032811
rosa_multiflora	Rmu_co8376147.1_g000001 Rmu_sc0000041.1_g000020 Rmu_sc0001103.1_g000038 Rmu_sc0001757.1_g000010 Rmu_sc0004598.1_g000029 Rmu_sc0004849.1_g000001 Rmu_sc0005389.1_g000025 Rmu_sc0005431.1_g000010 Rmu_sc0005431.1_g000020 Rmu_sc0005653.1_g000008 Rmu_sc0008351.1_g000022 Rmu_sc0011701.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054620 Rroxscaffold_1G00054630 Rroxscaffold_1G00054640 Rroxscaffold_5G00340400 Rroxscaffold_5G00340540 Rroxscaffold_5G00340550 Rroxscaffold_5G00340590 Rroxscaffold_5G00340630 Rroxscaffold_5G00340640 Rroxscaffold_5G00340760
rosa_rugosa	Rorug03G0342500 Rorug03G0354500 Rorug03G0355100 Rorug03G0355200 Rorug03G0355300 Rorug03G0356100 Rorug03G0356400 Rorug03G0356500 Rorug05G0084400
rosa_samantha	Rh4AG060000 Rh4AG060900 Rh4AG061200 Rh4BG058600 Rh4BG060300 Rh4BG060500 Rh4BG061200 Rh4BG061400 Rh4BG061700 Rh4BG062000 Rh4BG062100 Rh4BG077000 Rh4CG064400 Rh4CG064600 Rh4CG065900 Rh4CG066000 Rh4CG066300 Rh4CG067400 Rh4CG068000 Rh4CG068300 Rh4CG068400 Rh4CG084600 Rh4DG056100 Rh4DG056200 Rh4DG056600 Rh4DG056800 Rh4DG056900 Rh4DG057000 Rh4DG072000 Rh5BG173500 Rh5CG189600 Rh5CG190000
rosa_wichuraiana	Rw0G006720 Rw0G022980 Rw0G023000 Rw2G038350 Rw4G004810 Rw4G004850 Rw4G004870 Rw4G004880 Rw4G004990 Rw4G005000 Rw4G005080 Rw4G005110 Rw4G005120 Rw4G005130 Rw4G006450 Rw5G015940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	314
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	282
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	112, 118, 321
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	64
AfaI	GTAC	2 cut(s)	226, 284
AgsI	TTSAA	2 cut(s)	43, 100
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	30, 106
AluI	AGCT	2 cut(s)	30, 106
Alw21I	GWGCWC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	3 cut(s)	64, 127, 306
ApeKI	GCWGC	1 cut(s)	317
Asp718I	GGTACC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	2 cut(s)	66, 116
BciT130I	CCWGG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	2 cut(s)	318, 321
BlsI	GCNGC	2 cut(s)	319, 322
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	210, 284
BmrFI	CCNGG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	66, 129, 308
BshNI	GGYRCC	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	309
BsnI	GGCC	3 cut(s)	66, 129, 308
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	3 cut(s)	112, 118, 321
BspANI	GGCC	3 cut(s)	66, 129, 308
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	210, 284
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	14, 254
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 195, 314
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	66, 129, 308
BtgZI	GCGATG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	225, 283
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	7 cut(s)	30, 66, 106, 129, 209, 217, 308
CviKI_1	RGCY	7 cut(s)	30, 66, 106, 129, 209, 217, 308
CviQI	GTAC	2 cut(s)	225, 283
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	187
FaiI	YATR	5 cut(s)	185, 230, 240, 263, 350
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	318, 321
Fsp4HI	GCNGC	2 cut(s)	318, 321
GluI	GCNGC	2 cut(s)	318, 321
HaeIII	GGCC	3 cut(s)	66, 129, 308
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	14, 254
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 195, 314
Hsp92II	CATG	1 cut(s)	187
KpnI	GGTACC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	7 cut(s)	38, 116, 143, 279, 299, 309, 322
Lsp1109I	GCAGC	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	2 cut(s)	244, 337
MluNI	TGGCCA	1 cut(s)	66
MnlI	CCTC	4 cut(s)	119, 133, 185, 298
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	66
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	126, 195, 314
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	2 cut(s)	210, 284
NmeAIII	GCCGAG	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	319, 322
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	210, 284
RsaI	GTAC	2 cut(s)	226, 284
RsaNI	GTAC	2 cut(s)	225, 283
SatI	GCNGC	2 cut(s)	318, 321
Sau3AI	GATC	1 cut(s)	24
ScaI	AGTACT	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	5 cut(s)	32, 108, 262, 268, 328
SfcI	CTRYAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	244, 337
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	112, 118, 321
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	14, 254
TaqI	TCGA	2 cut(s)	108, 138
TasI	AATT	2 cut(s)	244, 337
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	37
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.