Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008731

Physical Location & Seq

Genomic Coordinates Reverse (-)

9291841 .. 9298051

Gene Structure 6211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTTCAGCTCTTTTTGCACGGACTCTCTTGGGTCATCGCCTTTTTCACTCTTCTGCACGCCCCCTATCTCAAAAGCCCCAAATCCTCACTTCCCTGCTCAATAAAGGATCTGATCTCTTGCGAGCTGACTCTACCTTTACAAAATATCGAATATCTGGTTTAGTACCTCGTGTTATGGCTTCGACAGTAGCTGGGGTAAAAGCAGATTTCTCAACACAGTCGGCATCTACAAATGAGCCAGTTGTTTCTGTTGACTGGCTCCATGCTAATCTCAAGGAGCCTGACCTTAAGGTTGTGGATGCATCTTGGTACATGCCTGATGAGCAAAGGAATCCAATTCAAGAATATCAGGTTGCTCATATTCCTGGTGCCCTTTTCTTTGACGTAGATGGAATATCAGATCGCATAACAAAGTTACCACATATGTTACCATCTGAGGAAGCCTTTGCTGCTGCTGTTTCTGCTCTTGGCATCGAGAACAAAGACGATCTAGTTGTATATGATGGGAAAGGGCTCTTTAGTGCAGCTCGTGTGTGGTGGATGTTCCGAGTGTTTGGCCATGACAGAGTCTGGGTTTTAGATGGCGGCTTGCCAAGGTGGCGTGCATCTGGATATGACGTTGAATCTAGTGCTTCTGGTGATGCGATTTTGAAAGCTAGTGCTGCCAGTGAGGCAATAGAGAAAGTATACAAGGGACAGCCAGTTGGTCCAACCACATTTCAGACTAAGTTTCAGCCACATCTTGTATGGAATCTTGAGCAGGTTAGAAAGAATATTGAGGAAAGAACTCACCAACATATAGATGCACGTTCAAAGGCCAGGTTCGATGGAACTGCTTTGGAACCTCGGAAAGGTATAAGAAGTGGTCATGTACCTGGAAGCAAGTGCATTCCTTTTCCCCAGTTGTTGGATGCTTCAGGGACAGTCTTACCAGCAGACCAGTTGAAAAAGAAATTTGATGAAGCAGGCATCACATTGGATAGCCCTATTGTTACTTCGTGTGGCACGGGTGTAACTGCTTGCATTCTCGCATTGGGTCTTCATAAACTTGGTAAGTCTGATGTGGCAGTCTATGATGGGTCTTGGACCGAGTGGGGAGCACATCCCGACACACCTGTCGACACTTCCACTTCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

381

Amino Acids

41.46

Weight (kDa)

6.64

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	84 - 203	6.4e-13	Rhodanese-like domain
Rhodanese	PF00581	254 - 368	1.2e-12	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16460 AT1G16460 AT1G16460 AT1G79230 AT1G79230
fragaria_vesca	FvH4_3g14990
malus_domestica	MD05G1228000.v1.1 MD10G1208500.v1.1
prunus_persica	Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1
pyrus_communis	pycom10g17730
rosa_chinensis	RchiOBHm_Chr5g0024611 RchiOBHm_Chr5g0024731
rosa_laevigata	RLG00000032810
rosa_multiflora	Rmu_sc0005699.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054650
rosa_rugosa	Rorug05G0084400
rosa_samantha	Rh5AG176100 Rh5BG173400 Rh5DG175000
rosa_wichuraiana	Rw5G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1118
Acc36I	ACCTGC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	910
AccI	GTMKAC	2 cut(s)	690, 1122
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	956
AcuI	CTGAAG	1 cut(s)	903
AfaI	GTAC	3 cut(s)	168, 314, 876
AfiI	CCNNNNNNNGG	2 cut(s)	854, 910
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	5 cut(s)	344, 626, 655, 816, 949
AjnI	CCWGG	3 cut(s)	367, 821, 877
AluBI	AGCT	5 cut(s)	11, 128, 194, 530, 659
AluI	AGCT	5 cut(s)	11, 128, 194, 530, 659
Alw21I	GWGCWC	1 cut(s)	1105
AlwI	GGATC	1 cut(s)	118
AlwNI	CAGNNNCTG	2 cut(s)	194, 573
AoxI	GGCC	2 cut(s)	559, 819
ApeKI	GCWGC	4 cut(s)	452, 455, 527, 665
ApoI	RAATTY	1 cut(s)	956
AspS9I	GGNCC	2 cut(s)	710, 1089
AsuHPI	GGTGA	2 cut(s)	653, 785
AvaII	GGWCC	2 cut(s)	710, 1089
BaeGI	GKGCMC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	561
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	519
BauI	CACGAG	2 cut(s)	171, 531
BbsI	GAAGAC	1 cut(s)	1034
Bbv12I	GWGCWC	1 cut(s)	1105
BbvI	GCAGC	4 cut(s)	439, 442, 539, 652
BccI	CCATC	6 cut(s)	386, 442, 500, 578, 824, 1073
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	3 cut(s)	369, 823, 879
BfaI	CTAG	3 cut(s)	494, 630, 660
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	754
BglI	GCCNNNNNGGC	2 cut(s)	601, 674
BisI	GCNGC	5 cut(s)	453, 456, 528, 589, 666
BlsI	GCNGC	5 cut(s)	454, 457, 529, 590, 667
Bme1390I	CCNGG	3 cut(s)	369, 823, 879
Bme18I	GGWCC	2 cut(s)	710, 1089
BmgT120I	GGNCC	2 cut(s)	710, 1089
BmiI	GGNNCC	4 cut(s)	263, 282, 373, 846
BmrFI	CCNGG	3 cut(s)	369, 823, 879
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	9 cut(s)	236, 292, 314, 483, 617, 634, 796, 904, 981
BmuI	ACTGGG	1 cut(s)	898
BpiI	GAAGAC	1 cut(s)	1034
BpuEI	CTTGAG	2 cut(s)	260, 779
BsaJI	CCNNGG	2 cut(s)	596, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	854, 910
Bse1I	ACTGG	6 cut(s)	242, 263, 669, 704, 904, 943
BseBI	CCWGG	3 cut(s)	369, 823, 879
BseDI	CCNNGG	2 cut(s)	596, 848
BseGI	GGATG	4 cut(s)	307, 549, 919, 1105
BseLI	CCNNNNNNNGG	2 cut(s)	854, 910
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	6 cut(s)	242, 263, 669, 704, 904, 943
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	4 cut(s)	439, 442, 539, 652
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	2 cut(s)	42, 546
BshFI	GGCC	2 cut(s)	561, 821
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	1105
BslFI	GGGAC	2 cut(s)	711, 937
BslI	CCNNNNNNNGG	2 cut(s)	854, 910
BsmFI	GGGAC	2 cut(s)	711, 937
BsmI	GAATGC	2 cut(s)	891, 1026
BsnI	GGCC	2 cut(s)	561, 821
Bsp1286I	GDGCHC	3 cut(s)	376, 519, 1105
Bsp143I	GATC	4 cut(s)	110, 115, 403, 490
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	2 cut(s)	561, 821
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	263, 282, 373, 846
BspMI	ACCTGC	1 cut(s)	754
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	371
BspTI	CTTAAG	1 cut(s)	290
BsrI	ACTGG	6 cut(s)	242, 263, 669, 704, 904, 943
BssECI	CCNNGG	2 cut(s)	596, 848
BssMI	GATC	4 cut(s)	110, 115, 403, 490
BssNAI	GTATAC	1 cut(s)	691
BssSI	CACGAG	2 cut(s)	171, 531
BssT1I	CCWWGG	1 cut(s)	596
Bst1107I	GTATAC	1 cut(s)	691
Bst2BI	CACGAG	2 cut(s)	171, 531
Bst2UI	CCWGG	3 cut(s)	369, 823, 879
Bst4CI	ACNGT	3 cut(s)	190, 222, 928
Bst6I	CTCTTC	1 cut(s)	58
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	6 cut(s)	61, 126, 593, 606, 970, 1024
BstDEI	CTNAG	2 cut(s)	438, 729
BstENI	CCTNNNNNAGG	1 cut(s)	852
BstF5I	GGATG	4 cut(s)	307, 549, 919, 1105
BstKTI	GATC	4 cut(s)	113, 118, 406, 493
BstMBI	GATC	4 cut(s)	110, 115, 403, 490
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 325, 452, 464, 601, 665, 674
BstNI	CCWGG	3 cut(s)	369, 823, 879
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	3 cut(s)	367, 821, 877
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	4 cut(s)	439, 442, 539, 652
BstV2I	GAAGAC	1 cut(s)	1034
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BstZ17I	GTATAC	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	561, 821
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	4 cut(s)	307, 549, 919, 1105
BtsIMutI	CAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	6 cut(s)	61, 126, 593, 606, 970, 1024
CaiI	CAGNNNCTG	2 cut(s)	194, 573
Cfr13I	GGNCC	2 cut(s)	710, 1089
Csp6I	GTAC	3 cut(s)	167, 313, 875
CviAII	CATG	4 cut(s)	266, 316, 563, 872
CviQI	GTAC	3 cut(s)	167, 313, 875
DdeI	CTNAG	2 cut(s)	438, 729
DpnI	GATC	4 cut(s)	112, 117, 405, 492
DpnII	GATC	4 cut(s)	110, 115, 403, 490
DrdI	GACNNNNNNGTC	1 cut(s)	1118
DseDI	GACNNNNNNGTC	1 cut(s)	1118
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	2 cut(s)	710, 1089
Eco57I	CTGAAG	1 cut(s)	903
EcoNI	CCTNNNNNAGG	1 cut(s)	852
EcoRII	CCWGG	3 cut(s)	367, 821, 877
EcoT14I	CCWWGG	1 cut(s)	596
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	4 cut(s)	269, 319, 566, 875
FaqI	GGGAC	2 cut(s)	711, 937
FatI	CATG	4 cut(s)	265, 315, 562, 871
FauNDI	CATATG	1 cut(s)	426
FblI	GTMKAC	2 cut(s)	690, 1122
Fnu4HI	GCNGC	5 cut(s)	453, 456, 528, 589, 666
FokI	GGATG	4 cut(s)	314, 556, 926, 1092
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	5 cut(s)	453, 456, 528, 589, 666
FspBI	CTAG	3 cut(s)	494, 630, 660
GluI	GCNGC	5 cut(s)	453, 456, 528, 589, 666
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	561, 821
Hin1II	CATG	4 cut(s)	269, 319, 566, 875
HincII	GTYRAC	2 cut(s)	256, 1123
HindII	GTYRAC	2 cut(s)	256, 1123
HinfI	GANTC	6 cut(s)	25, 131, 334, 570, 626, 754
HphI	GGTGA	2 cut(s)	653, 785
Hpy166II	GTNNAC	3 cut(s)	256, 691, 1123
Hpy188I	TCNGA	7 cut(s)	115, 403, 439, 551, 726, 852, 1063
Hpy188III	TCNNGA	6 cut(s)	344, 478, 612, 758, 1109, 1140
Hpy8I	GTNNAC	3 cut(s)	256, 691, 1123
HpyCH4III	ACNGT	3 cut(s)	190, 222, 928
HpyCH4IV	ACGT	3 cut(s)	387, 621, 811
HpyCH4V	TGCA	8 cut(s)	20, 59, 305, 527, 608, 809, 891, 1026
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 325, 452, 464, 601, 665, 674
HpyF3I	CTNAG	2 cut(s)	438, 729
HpySE526I	ACGT	3 cut(s)	387, 621, 811
Hsp92II	CATG	4 cut(s)	269, 319, 566, 875
Kzo9I	GATC	4 cut(s)	110, 115, 403, 490
LmnI	GCTCC	3 cut(s)	267, 280, 1100
Lsp1109I	GCAGC	4 cut(s)	439, 442, 539, 652
LweI	GCATC	9 cut(s)	236, 292, 314, 483, 617, 634, 796, 904, 981
MaeI	CTAG	3 cut(s)	494, 630, 660
MaeII	ACGT	3 cut(s)	387, 621, 811
MaeIII	GTNAC	4 cut(s)	417, 429, 994, 1015
MalI	GATC	4 cut(s)	112, 117, 405, 492
MboI	GATC	4 cut(s)	110, 115, 403, 490
MboII	GAAGA	3 cut(s)	45, 1034, 1128
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	3 cut(s)	376, 519, 1105
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	2 cut(s)	339, 956
MluNI	TGGCCA	1 cut(s)	561
MlyI	GAGTC	3 cut(s)	19, 125, 579
MmeI	TCCRAC	2 cut(s)	737, 891
MnlI	CCTC	6 cut(s)	98, 180, 433, 667, 775, 858
Mox20I	TGGCCA	1 cut(s)	561
Mph1103I	ATGCAT	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	804
Msp20I	TGGCCA	1 cut(s)	561
MspCI	CTTAAG	1 cut(s)	290
MspR9I	CCNGG	3 cut(s)	369, 823, 879
Mva1269I	GAATGC	2 cut(s)	891, 1026
MvaI	CCWGG	3 cut(s)	369, 823, 879
MwoI	GCNNNNNNNGC	7 cut(s)	17, 325, 452, 464, 601, 665, 674
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	4 cut(s)	110, 115, 403, 490
NlaIII	CATG	4 cut(s)	269, 319, 566, 875
NlaIV	GGNNCC	4 cut(s)	263, 282, 373, 846
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	319
PctI	GAATGC	2 cut(s)	891, 1026
PfeI	GAWTC	3 cut(s)	334, 626, 754
PflFI	GACNNNGTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	910
PkrI	GCNGC	5 cut(s)	454, 457, 529, 590, 667
PleI	GAGTC	3 cut(s)	19, 125, 578
PpsI	GAGTC	3 cut(s)	19, 125, 578
Psp6I	CCWGG	3 cut(s)	367, 821, 877
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	3 cut(s)	367, 821, 877
PspN4I	GGNNCC	4 cut(s)	263, 282, 373, 846
PspPI	GGNCC	2 cut(s)	710, 1089
PstNI	CAGNNNCTG	2 cut(s)	194, 573
PsuI	RGATCY	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	569
RsaI	GTAC	3 cut(s)	168, 314, 876
RsaNI	GTAC	3 cut(s)	167, 313, 875
RseI	CAYNNNNRTG	1 cut(s)	804
SalI	GTCGAC	1 cut(s)	1121
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	5 cut(s)	453, 456, 528, 589, 666
Sau3AI	GATC	4 cut(s)	110, 115, 403, 490
Sau96I	GGNCC	2 cut(s)	710, 1089
SchI	GAGTC	3 cut(s)	19, 125, 579
ScrFI	CCNGG	3 cut(s)	369, 823, 879
SduI	GDGCHC	3 cut(s)	376, 519, 1105
SfaNI	GCATC	9 cut(s)	236, 292, 314, 483, 617, 634, 796, 904, 981
SinI	GGWCC	2 cut(s)	710, 1089
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	3 cut(s)	275, 290, 758
SmoI	CTYRAG	3 cut(s)	275, 290, 758
Sse9I	AATT	2 cut(s)	339, 956
SsiI	CCGC	1 cut(s)	588
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	3 cut(s)	494, 630, 660
StyD4I	CCNGG	3 cut(s)	367, 821, 877
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	3 cut(s)	190, 222, 928
TaiI	ACGT	3 cut(s)	390, 624, 814
TaqI	TCGA	5 cut(s)	151, 185, 477, 828, 1122
TaqII	GACCGA	1 cut(s)	1106
TasI	AATT	2 cut(s)	339, 956
TauI	GCSGC	1 cut(s)	591
TfiI	GAWTC	3 cut(s)	334, 626, 754
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	676
TseI	GCWGC	4 cut(s)	452, 455, 527, 665
TspDTI	ATGAA	2 cut(s)	978, 1034
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	676
Tth111I	GACNNNGTC	1 cut(s)	569
Van91I	CCANNNNNTGG	1 cut(s)	910
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	710, 1089
XagI	CCTNNNNNAGG	1 cut(s)	852
XapI	RAATTY	1 cut(s)	956
XceI	RCATGY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	747
XmiI	GTMKAC	2 cut(s)	690, 1122
XspI	CTAG	3 cut(s)	494, 630, 660
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.