Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008731

Physical Location & Seq

Genomic Coordinates Reverse (-)

7424346 .. 7431958

Gene Structure 7613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G134300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTTCATCTCTTTTCACAAGGACTCTCTTGGGTCATCATCGCCTTTTCCACTCTGCTTCACACTCACTCTGTCAAAAGCCCCAAATTTTCTCTTCTCTGTTCAATAGGGGAATAGAACACTTACGAGCTGACCCTGCCTATACGAAATATAAAGCATCTGGTTGGGTTCCTCGTGCAATGGCTTCATCAGTAGCTGGGGCAAGAGCAGAGTTTACAACACAATCTGTGTCTACAAATGAGCCTGTTGTTTCTGTTGATTGGCTCCATGCTAACCTTAAGGAGCCTGATCTGAAGGTGTTGGATGCCTCTTGGTACATGCCTGATGAGCAAAGGAATCCAATTCAAGAGTATCAGGTTGCTCACATTCCTGGTGCACTTTTCTTTGATGTAGATGGAATATCAGATCGCACTACAAAATTACCGCATATGTTACCATCAGAGGAAGCCTTTGCTGCTGCTGTTTCGGCTCTTGGCATTGAGAACAAAAATGATCTAGTGGTGTATGATGGAAAAGGGATCTTTAGTGCAGCTCGTGTATGGTGGATGTTCCGAGTATTTGGCCATGACAGAGTCTGGGTTTTAGATGGAGGCCTACCAAGATGGCGTGCATCTGGATATGATGTTGAATCTAGCGCGTCTGGTGATGCAATTTTAAAAGCTAGTGCTGCCAGTGAGGCAATAGAGAAAGTATACAAGGGACAAGCAGTTGGGCCAACTACATTTCAGACTAAGTTTCAGCCACATCTTGTCTGGACTATTGATCAGGTTAGAAAAAATGTTGAAGAAAGAACTCATGAACATATAGATGCCCGATCAAAGGCCAGGTTTGATGGAACTGCATTGGAGCCCCGGAAAGGGATAAGAAGTGGTCATGTACCTGGAAGCAAGTGTGTTCCTTTTCCTCAGTTGTTGGATTCTTCAGTGACACTCTTACCAGCAGATAAGTTGAAAAACAGATTTGATGAAGCAGGCATCTCTTTGGAAAGCCCTATTGTTACTTCATGTGGGACTGGTGTAACTGCTTGCATTCTTGCACTGGGTCTTCATCGACTTGGTAAGCCTGAAGTAGCAGTCTATGATGGATCTTGGACTGAATGGGGAGCGCAGTCCGACACACCCATCGACACTTCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

380

Amino Acids

41.66

Weight (kDa)

6.54

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16460 AT1G16460 AT1G16460 AT1G79230 AT1G79230
fragaria_vesca	FvH4_3g14990
malus_domestica	MD05G1228000.v1.1 MD10G1208500.v1.1
prunus_persica	Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1
pyrus_communis	pycom10g17730
rosa_chinensis	RchiOBHm_Chr5g0024611 RchiOBHm_Chr5g0024731
rosa_laevigata	RLG00000032810
rosa_multiflora	Rmu_sc0005699.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054650
rosa_rugosa	Rorug05G0084400
rosa_samantha	Rh5AG176100 Rh5BG173400 Rh5DG175000
rosa_wichuraiana	Rw5G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	233, 693
AccII	CGCG	1 cut(s)	638
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	2 cut(s)	527, 1093
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	3 cut(s)	314, 906, 1086
AfaI	GTAC	2 cut(s)	317, 879
AfiI	CCNNNNNNNGG	3 cut(s)	820, 857, 858
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	106, 347, 629, 785, 952
AjnI	CCWGG	3 cut(s)	370, 824, 880
AluBI	AGCT	4 cut(s)	131, 197, 533, 662
AluI	AGCT	4 cut(s)	131, 197, 533, 662
Alw21I	GWGCWC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	527, 1093
AlwNI	CAGNNNCTG	2 cut(s)	197, 576
AoxI	GGCC	4 cut(s)	562, 592, 713, 822
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	455, 458, 530, 668
ApoI	RAATTY	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	638, 1108
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	1 cut(s)	853
AsuHPI	GGTGA	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	852
BauI	CACGAG	2 cut(s)	174, 534
BbsI	GAAGAC	1 cut(s)	1037
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	4 cut(s)	442, 445, 542, 655
BccI	CCATC	8 cut(s)	389, 445, 503, 581, 597, 827, 1076, 1130
BciT130I	CCWGG	3 cut(s)	372, 826, 882
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	1 cut(s)	853
BfaI	CTAG	3 cut(s)	497, 633, 663
BfrI	CTTAAG	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	677
BisI	GCNGC	4 cut(s)	456, 459, 531, 669
BlsI	GCNGC	4 cut(s)	457, 460, 532, 670
Bme1390I	CCNGG	4 cut(s)	372, 826, 853, 882
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	4 cut(s)	171, 266, 285, 849
BmrFI	CCNGG	4 cut(s)	372, 826, 853, 882
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	6 cut(s)	167, 295, 620, 637, 799, 984
BmuI	ACTGGG	1 cut(s)	1049
BpiI	GAAGAC	1 cut(s)	1037
BpuMI	CCSGG	1 cut(s)	853
BsaJI	CCNNGG	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	3 cut(s)	820, 857, 858
Bse1I	ACTGG	3 cut(s)	672, 1018, 1044
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	372, 826, 882
BseDI	CCNNGG	1 cut(s)	851
BseGI	GGATG	2 cut(s)	310, 552
BseLI	CCNNNNNNNGG	3 cut(s)	820, 857, 858
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	920
BseNI	ACTGG	3 cut(s)	672, 1018, 1044
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	4 cut(s)	442, 445, 542, 655
BseYI	CCCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	4 cut(s)	564, 594, 715, 824
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	853
BslFI	GGGAC	2 cut(s)	714, 1024
BslI	CCNNNNNNNGG	3 cut(s)	820, 857, 858
BsmFI	GGGAC	2 cut(s)	714, 1024
BsmI	GAATGC	1 cut(s)	1029
BsnI	GGCC	4 cut(s)	564, 594, 715, 824
Bsp1286I	GDGCHC	2 cut(s)	379, 852
Bsp143I	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	4 cut(s)	564, 594, 715, 824
BspCNI	CTCAG	1 cut(s)	919
BspFNI	CGCG	1 cut(s)	638
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	4 cut(s)	171, 266, 285, 849
BspPI	GGATC	2 cut(s)	527, 1093
BspTI	CTTAAG	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	3 cut(s)	672, 1018, 1044
BssECI	CCNNGG	1 cut(s)	851
BssMI	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
BssNAI	GTATAC	1 cut(s)	694
BssSI	CACGAG	2 cut(s)	174, 534
Bst1107I	GTATAC	1 cut(s)	694
Bst2BI	CACGAG	2 cut(s)	174, 534
Bst2UI	CCWGG	3 cut(s)	372, 826, 882
Bst6I	CTCTTC	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	609, 973, 1027
BstDEI	CTNAG	2 cut(s)	732, 906
BstF5I	GGATG	2 cut(s)	310, 552
BstFNI	CGCG	1 cut(s)	638
BstHHI	GCGC	2 cut(s)	638, 1108
BstKTI	GATC	7 cut(s)	292, 409, 496, 522, 766, 818, 1088
BstMBI	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 328, 455, 467, 668, 677
BstNI	CCWGG	3 cut(s)	372, 826, 882
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	4 cut(s)	370, 824, 851, 880
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	4 cut(s)	442, 445, 542, 655
BstV2I	GAAGAC	1 cut(s)	1037
BstX2I	RGATCY	2 cut(s)	519, 1085
BstYI	RGATCY	2 cut(s)	519, 1085
BstZ17I	GTATAC	1 cut(s)	694
BsuRI	GGCC	4 cut(s)	564, 594, 715, 824
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	310, 552
BtsIMutI	CAGTG	3 cut(s)	679, 930, 1037
Cac8I	GCNNGC	3 cut(s)	609, 973, 1027
CaiI	CAGNNNCTG	2 cut(s)	197, 576
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	2 cut(s)	638, 1108
Cfr13I	GGNCC	1 cut(s)	713
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	316, 878
CviAII	CATG	6 cut(s)	269, 319, 566, 797, 875, 1005
CviQI	GTAC	2 cut(s)	316, 878
DdeI	CTNAG	2 cut(s)	732, 906
DpnI	GATC	7 cut(s)	291, 408, 495, 521, 765, 817, 1087
DpnII	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
DraI	TTTAAA	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	852
Eco57I	CTGAAG	3 cut(s)	314, 906, 1086
EcoRII	CCWGG	3 cut(s)	370, 824, 880
EcoT38I	GRGCYC	1 cut(s)	852
FaeI	CATG	6 cut(s)	272, 322, 569, 800, 878, 1008
FaqI	GGGAC	2 cut(s)	714, 1024
FatI	CATG	6 cut(s)	268, 318, 565, 796, 874, 1004
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	2 cut(s)	233, 693
Fnu4HI	GCNGC	4 cut(s)	456, 459, 531, 669
FokI	GGATG	2 cut(s)	317, 559
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	4 cut(s)	456, 459, 531, 669
FspBI	CTAG	3 cut(s)	497, 633, 663
GlaI	GCGC	2 cut(s)	637, 1107
GluI	GCNGC	4 cut(s)	456, 459, 531, 669
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	564, 594, 715, 824
HapII	CCGG	1 cut(s)	853
HgaI	GACGC	1 cut(s)	627
HhaI	GCGC	2 cut(s)	638, 1108
Hin1II	CATG	6 cut(s)	272, 322, 569, 800, 878, 1008
Hin6I	GCGC	2 cut(s)	636, 1106
HinP1I	GCGC	2 cut(s)	636, 1106
HinfI	GANTC	5 cut(s)	25, 337, 573, 629, 917
HpaII	CCGG	1 cut(s)	853
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	4 cut(s)	216, 234, 377, 694
Hpy188I	TCNGA	6 cut(s)	294, 406, 442, 554, 729, 1114
Hpy188III	TCNNGA	4 cut(s)	347, 615, 754, 797
Hpy8I	GTNNAC	4 cut(s)	216, 234, 377, 694
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	8 cut(s)	179, 377, 530, 611, 650, 842, 1029, 1037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 328, 455, 467, 668, 677
HpyF3I	CTNAG	2 cut(s)	732, 906
Hsp92II	CATG	6 cut(s)	272, 322, 569, 800, 878, 1008
HspAI	GCGC	2 cut(s)	636, 1106
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
LmnI	GCTCC	4 cut(s)	270, 283, 847, 1103
Lsp1109I	GCAGC	4 cut(s)	442, 445, 542, 655
LweI	GCATC	6 cut(s)	167, 295, 620, 637, 799, 984
MaeI	CTAG	3 cut(s)	497, 633, 663
MaeIII	GTNAC	4 cut(s)	432, 925, 997, 1018
MalI	GATC	7 cut(s)	291, 408, 495, 521, 765, 817, 1087
MboI	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
MboII	GAAGA	5 cut(s)	87, 797, 912, 1037, 1125
MflI	RGATCY	2 cut(s)	519, 1085
MhlI	GDGCHC	2 cut(s)	379, 852
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	4 cut(s)	87, 342, 419, 651
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	2 cut(s)	19, 582
MmeI	TCCRAC	3 cut(s)	282, 894, 1137
MnlI	CCTC	6 cut(s)	183, 319, 436, 584, 670, 915
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	2 cut(s)	279, 656
MslI	CAYNNNNRTG	1 cut(s)	807
Msp20I	TGGCCA	1 cut(s)	564
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	1 cut(s)	853
MspR9I	CCNGG	4 cut(s)	372, 826, 853, 882
Mva1269I	GAATGC	1 cut(s)	1029
MvaI	CCWGG	3 cut(s)	372, 826, 882
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	6 cut(s)	137, 328, 455, 467, 668, 677
NciI	CCSGG	1 cut(s)	853
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
NlaIII	CATG	6 cut(s)	272, 322, 569, 800, 878, 1008
NlaIV	GGNNCC	4 cut(s)	171, 266, 285, 849
NmuCI	GTSAC	1 cut(s)	925
NspI	RCATGY	1 cut(s)	322
PagI	TCATGA	1 cut(s)	796
PceI	AGGCCT	1 cut(s)	594
PctI	GAATGC	1 cut(s)	1029
PfeI	GAWTC	3 cut(s)	337, 629, 917
PflFI	GACNNNGTC	1 cut(s)	572
PkrI	GCNGC	4 cut(s)	457, 460, 532, 670
PleI	GAGTC	2 cut(s)	19, 581
PpsI	GAGTC	2 cut(s)	19, 581
Psp6I	CCWGG	3 cut(s)	370, 824, 880
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	3 cut(s)	370, 824, 880
PspN4I	GGNNCC	4 cut(s)	171, 266, 285, 849
PspPI	GGNCC	1 cut(s)	713
PstNI	CAGNNNCTG	2 cut(s)	197, 576
PsuI	RGATCY	2 cut(s)	519, 1085
PsyI	GACNNNGTC	1 cut(s)	572
RsaI	GTAC	2 cut(s)	317, 879
RsaNI	GTAC	2 cut(s)	316, 878
RseI	CAYNNNNRTG	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	279, 656
SatI	GCNGC	4 cut(s)	456, 459, 531, 669
Sau3AI	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	2 cut(s)	19, 582
ScrFI	CCNGG	4 cut(s)	372, 826, 853, 882
SduI	GDGCHC	2 cut(s)	379, 852
SfaNI	GCATC	6 cut(s)	167, 295, 620, 637, 799, 984
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	4 cut(s)	87, 342, 419, 651
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	3 cut(s)	497, 633, 663
StuI	AGGCCT	1 cut(s)	594
StyD4I	CCNGG	4 cut(s)	370, 824, 851, 880
TaqI	TCGA	2 cut(s)	1051, 1125
TasI	AATT	4 cut(s)	87, 342, 419, 651
TfiI	GAWTC	3 cut(s)	337, 629, 917
Tru1I	TTAA	2 cut(s)	279, 656
Tru9I	TTAA	2 cut(s)	279, 656
TscAI	CASTG	3 cut(s)	679, 930, 1044
TseFI	GTSAC	1 cut(s)	925
TseI	GCWGC	4 cut(s)	455, 458, 530, 668
Tsp45I	GTSAC	1 cut(s)	925
TspDTI	ATGAA	5 cut(s)	177, 813, 981, 993, 1037
TspRI	CASTG	3 cut(s)	679, 930, 1044
Tth111I	GACNNNGTC	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	375
XapI	RAATTY	1 cut(s)	87
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	750
XmiI	GTMKAC	2 cut(s)	233, 693
XspI	CTAG	3 cut(s)	497, 633, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.