Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004336

Physical Location & Seq

Genomic Coordinates Forward (+)

29836644 .. 29838140

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCCAAGAAAGCTTTACTGATTGGGATCAACTACGTGGGAACCAAGGCAGAGCTACGAGGCTGCGTCAACGATGTCCGTCGGATGCGGATAAGCCTCGTCGAACGGTACGGATTCTCCGAGGAGAACATCAAAATGTTGATTGATACTGATAGTTCTTCGATCAAACCGACCGGTAAGAACATCAGACAGGCGTTGTTAGATCTCGTTGAACCGGCTAAATCGGGTGATGTTCTCTTCGTCCATTACAGTGGACATGGGACTAGGTTACCCGCGGAAACTGGAGAAGATGATGATACTGGTTACGATGAGTGTATTGTTCCTTCCGATATGAATCTCATCACCGATGATGATTTCAGGGATCTTGTGGATATGGTGCCAAAGGATTGTCCCATCACAATCATATCTGACTCTTGTCACAGTGGCGGTCTCATAGATGAAGCCAAAGAGCAGATAGGAGAGAGCACGAAGAAGAAGAAAGACTCTGGAGACTCTTCAACGATCAACAAGGAGACAGAAGCAGAGATAATTGAAGTGGGAAACAGATCTCTGCCATTGGAGACTTTGATTGATATGCTGAAGCAAGAAACAGGCAACGATGATATCGAAGTGGGGAAAATCAGGACAACCCTTTTCGATATGTTTGGAGATGATTCAAGTCCAAAGGTGAAGAAGTTTATGAATGTGATTCTAAGCAACCTACAAGAGACTACTACTACTATTCAAACTGTTTCAGATGAGGTATTGGGATCAGTTGAGAACCTAGCTCAAGAGTTTCTGGAGCAGAAGCTTAGCGACGATGTGAAACCCGCGATCCAAGATGTGTATGCAGGTGCTATAAATGGTGCACTTCCTGATAATGGTATACTGATCAGTGGTTGCCAAACTGATCAAACTTCTTCAGACGCAAGCCCACCGGGTCACCCGGAATTGGCTTATGGAGCACTAACCAATGCTATACAGATTATAATTGGGGAGACTAAAGGTAAGATTAGTAACAAAGATCTTGTTTTGAAGGCTAGGAAGCTTCTTAGGAAACAGGGCTTTGATCAACGACCGGGACTGTATTGCAATGATGCTTATGTCAATGCTCGGTTTATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010225 GO:0010421 GO:0010467 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016485 GO:0016540 GO:0016787 GO:0019538 GO:0030054 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051604 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0071944 GO:0097237 GO:0097468 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

368

Amino Acids

40.24

Weight (kDa)

4.68

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	3 - 358	1.2e-39	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79320 AT1G79330 AT1G79340
fragaria_vesca	FvH4_3g13930
malus_domestica	MD10G1218100.v1.1
prunus_persica	Prupe.4G126000_v2.0.a1
pyrus_communis	pycom05g21610 pycom10g18390
rosa_chinensis	RchiOBHm_Chr5g0023131 RchiOBHm_Chr5g0023141
rosa_laevigata	RLG00000032701 RLG00000032702
rosa_multiflora	Rmu_co8416803.1_g000001 Rmu_co8502493.1_g000001 Rmu_sc0007300.1_g000020 Rmu_sc0015109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056200 Rroxscaffold_1G00056210
rosa_rugosa	Rorug05G0077400 Rorug05G0077500
rosa_samantha	Rh5AG163500 Rh5AG163700 Rh5BG162800 Rh5BG162900 Rh5CG177700 Rh5CG177900 Rh5DG164100 Rh5DG164300
rosa_wichuraiana	Rw5G014750 Rw5G014770 Rw5G015050 Rw5G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	968
AarI	CACCTGC	1 cut(s)	821
Acc36I	ACCTGC	1 cut(s)	821
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	865
AccII	CGCG	2 cut(s)	275, 812
AciI	CCGC	5 cut(s)	88, 273, 275, 426, 810
AclWI	GGATC	4 cut(s)	35, 369, 757, 808
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	599, 885
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	860, 931
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	6 cut(s)	212, 498, 533, 657, 725, 1015
AluBI	AGCT	5 cut(s)	14, 55, 767, 790, 1027
AluI	AGCT	5 cut(s)	14, 55, 767, 790, 1027
Alw21I	GWGCWC	3 cut(s)	467, 850, 946
Alw26I	GTCTC	6 cut(s)	434, 483, 506, 554, 701, 971
Alw44I	GTGCAC	1 cut(s)	846
AlwI	GGATC	4 cut(s)	35, 369, 757, 808
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	846
ApeKI	GCWGC	1 cut(s)	63
AsiGI	ACCGGT	1 cut(s)	173
AsuC2I	CCSGG	3 cut(s)	918, 926, 1059
AsuHPI	GGTGA	4 cut(s)	239, 334, 679, 914
BaeGI	GKGCMC	1 cut(s)	850
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	376
BarI	GAAGNNNNNNTAC	2 cut(s)	307, 339
Bbv12I	GWGCWC	3 cut(s)	467, 850, 946
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	401
BclI	TGATCA	3 cut(s)	870, 889, 1048
BcnI	CCSGG	3 cut(s)	918, 926, 1059
BcoDI	GTCTC	6 cut(s)	434, 483, 506, 554, 701, 971
BfaI	CTAG	3 cut(s)	264, 764, 1020
BfuAI	ACCTGC	1 cut(s)	821
BglII	AGATCT	3 cut(s)	202, 545, 1003
BisI	GCNGC	1 cut(s)	64
BlpI	GCTNAGC	1 cut(s)	791
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	3 cut(s)	918, 926, 1059
BmiI	GGNNCC	2 cut(s)	43, 378
BmrFI	CCNGG	3 cut(s)	918, 926, 1059
BmsI	GCATC	2 cut(s)	75, 1066
BoxI	GACNNNNGTC	1 cut(s)	414
BpmI	CTGGAG	3 cut(s)	303, 507, 800
Bpu1102I	GCTNAGC	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	753
BpuMI	CCSGG	3 cut(s)	918, 926, 1059
BsaAI	YACGTR	1 cut(s)	37
BsaBI	GATNNNNATC	2 cut(s)	26, 333
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	45, 120, 273
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	860, 931
Bse118I	RCCGGY	2 cut(s)	173, 214
Bse1I	ACTGG	2 cut(s)	286, 304
Bse3DI	GCAATG	1 cut(s)	1078
Bse8I	GATNNNNATC	2 cut(s)	26, 333
BseDI	CCNNGG	3 cut(s)	45, 120, 273
BseGI	GGATG	1 cut(s)	90
BseJI	GATNNNNATC	2 cut(s)	26, 333
BseLI	CCNNNNNNNGG	2 cut(s)	860, 931
BseMI	GCAATG	1 cut(s)	1078
BseNI	ACTGG	2 cut(s)	286, 304
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	850
BseXI	GCAGC	1 cut(s)	50
Bsh1236I	CGCG	2 cut(s)	275, 812
Bsh1285I	CGRYCG	2 cut(s)	174, 1058
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	376
BshTI	ACCGGT	1 cut(s)	173
BsiEI	CGRYCG	2 cut(s)	174, 1058
BsiHKAI	GWGCWC	3 cut(s)	467, 850, 946
BsiSI	CCGG	5 cut(s)	174, 215, 917, 926, 1058
BslFI	GGGAC	3 cut(s)	274, 375, 1074
BslI	CCNNNNNNNGG	2 cut(s)	860, 931
BsmAI	GTCTC	6 cut(s)	434, 483, 506, 554, 701, 971
BsmFI	GGGAC	3 cut(s)	274, 375, 1074
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	434
Bsp1286I	GDGCHC	3 cut(s)	467, 850, 946
Bsp1720I	GCTNAGC	1 cut(s)	791
BspACI	CCGC	5 cut(s)	88, 273, 275, 426, 810
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	275, 812
BspLI	GGNNCC	2 cut(s)	43, 378
BspMI	ACCTGC	1 cut(s)	821
BspPI	GGATC	4 cut(s)	35, 369, 757, 808
BspT107I	GGYRCC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	1078
BsrFI	RCCGGY	2 cut(s)	173, 214
BsrI	ACTGG	2 cut(s)	286, 304
BssAI	RCCGGY	2 cut(s)	173, 214
BssECI	CCNNGG	3 cut(s)	45, 120, 273
BssNAI	GTATAC	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	45
Bst1107I	GTATAC	1 cut(s)	866
Bst4CI	ACNGT	5 cut(s)	108, 251, 422, 730, 1065
Bst6I	CTCTTC	2 cut(s)	242, 499
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	910
BstDEI	CTNAG	3 cut(s)	692, 791, 1031
BstDSI	CCRYGG	1 cut(s)	273
BstEII	GGTNACC	2 cut(s)	267, 920
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	2 cut(s)	275, 812
BstMAI	GTCTC	6 cut(s)	434, 483, 506, 554, 701, 971
BstMCI	CGRYCG	2 cut(s)	174, 1058
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 941
BstPAI	GACNNNNGTC	1 cut(s)	414
BstPI	GGTNACC	2 cut(s)	267, 920
BstSCI	CCNGG	3 cut(s)	916, 924, 1057
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	2 cut(s)	275, 812
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	4 cut(s)	202, 361, 545, 1003
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	4 cut(s)	202, 361, 545, 1003
BstZ17I	GTATAC	1 cut(s)	866
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	256, 427, 880
BveI	ACCTGC	1 cut(s)	821
Cac8I	GCNNGC	1 cut(s)	910
Cfr10I	RCCGGY	2 cut(s)	173, 214
Cfr42I	CCGCGG	1 cut(s)	276
CseI	GACGC	2 cut(s)	55, 914
Csp6I	GTAC	1 cut(s)	109
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	1 cut(s)	257
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	3 cut(s)	692, 791, 1031
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	242, 499
EarI	CTCTTC	2 cut(s)	242, 499
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	599, 885
Eco91I	GGTNACC	2 cut(s)	267, 920
EcoO65I	GGTNACC	2 cut(s)	267, 920
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	260
FaqI	GGGAC	3 cut(s)	274, 375, 1074
FatI	CATG	1 cut(s)	256
FauI	CCCGC	2 cut(s)	280, 817
FbaI	TGATCA	3 cut(s)	870, 889, 1048
FblI	GTMKAC	1 cut(s)	865
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	3 cut(s)	264, 764, 1020
GluI	GCNGC	1 cut(s)	64
GsuI	CTGGAG	3 cut(s)	303, 507, 800
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	174, 215, 917, 926, 1058
HgaI	GACGC	2 cut(s)	55, 914
Hin1II	CATG	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	3 cut(s)	12, 788, 1025
HinfI	GANTC	7 cut(s)	114, 334, 410, 482, 491, 653, 688
HpaII	CCGG	5 cut(s)	174, 215, 917, 926, 1058
HphI	GGTGA	4 cut(s)	239, 334, 679, 914
Hpy166II	GTNNAC	4 cut(s)	70, 254, 848, 866
Hpy188I	TCNGA	7 cut(s)	84, 121, 188, 328, 409, 736, 904
Hpy188III	TCNNGA	5 cut(s)	486, 622, 770, 779, 854
Hpy8I	GTNNAC	4 cut(s)	70, 254, 848, 866
Hpy99I	CGWCG	3 cut(s)	84, 104, 800
HpyAV	CCTTC	2 cut(s)	333, 1009
HpyCH4III	ACNGT	5 cut(s)	108, 251, 422, 730, 1065
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	830, 848, 1071
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 941
HpyF3I	CTNAG	3 cut(s)	692, 791, 1031
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	260
Ksp22I	TGATCA	3 cut(s)	870, 889, 1048
KspI	CCGCGG	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	781, 941
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	2 cut(s)	75, 1066
MaeI	CTAG	3 cut(s)	264, 764, 1020
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	5 cut(s)	267, 302, 416, 920, 995
MboII	GAAGA	9 cut(s)	150, 229, 299, 481, 484, 486, 487, 682, 891
MflI	RGATCY	4 cut(s)	202, 361, 545, 1003
MhlI	GDGCHC	3 cut(s)	467, 850, 946
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	528, 929, 969
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	404, 476, 485
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	53, 107, 115, 733
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	134, 249
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	5 cut(s)	174, 215, 917, 926, 1058
MspR9I	CCNGG	3 cut(s)	918, 926, 1059
MvnI	CGCG	2 cut(s)	275, 812
MwoI	GCNNNNNNNGC	2 cut(s)	11, 941
NciI	CCSGG	3 cut(s)	918, 926, 1059
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	43, 378
NmuCI	GTSAC	2 cut(s)	416, 920
PaqCI	CACCTGC	1 cut(s)	821
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 167, 603
PfeI	GAWTC	4 cut(s)	114, 334, 653, 688
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	3 cut(s)	404, 476, 485
PpsI	GAGTC	3 cut(s)	404, 476, 485
Ppu21I	YACGTR	1 cut(s)	37
PshAI	GACNNNNGTC	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	968
PspEI	GGTNACC	2 cut(s)	267, 920
PspN4I	GGNNCC	2 cut(s)	43, 378
PsuI	RGATCY	4 cut(s)	202, 361, 545, 1003
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	2 cut(s)	134, 249
SacII	CCGCGG	1 cut(s)	276
SatI	GCNGC	1 cut(s)	64
SchI	GAGTC	3 cut(s)	404, 476, 485
ScrFI	CCNGG	3 cut(s)	918, 926, 1059
SduI	GDGCHC	3 cut(s)	467, 850, 946
SfaNI	GCATC	2 cut(s)	75, 1066
Sfr303I	CCGCGG	1 cut(s)	276
SgrBI	CCGCGG	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	134, 249
SmlI	CTYRAG	1 cut(s)	768
SmoI	CTYRAG	1 cut(s)	768
Sse9I	AATT	3 cut(s)	528, 929, 969
SsiI	CCGC	5 cut(s)	88, 273, 275, 426, 810
SspMI	CTAG	3 cut(s)	264, 764, 1020
StyD4I	CCNGG	3 cut(s)	916, 924, 1057
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	5 cut(s)	108, 251, 422, 730, 1065
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	4 cut(s)	102, 161, 606, 636
TasI	AATT	3 cut(s)	528, 929, 969
TfiI	GAWTC	4 cut(s)	114, 334, 653, 688
TscAI	CASTG	3 cut(s)	256, 427, 880
TseFI	GTSAC	2 cut(s)	416, 920
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	2 cut(s)	416, 920
TspDTI	ATGAA	3 cut(s)	347, 453, 695
TspGWI	ACGGA	2 cut(s)	68, 126
TspRI	CASTG	3 cut(s)	256, 427, 880
VneI	GTGCAC	1 cut(s)	846
XmiI	GTMKAC	1 cut(s)	865
XspI	CTAG	3 cut(s)	264, 764, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.