Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004336

Physical Location & Seq

Genomic Coordinates Forward (+)

6728617 .. 6729136

Gene Structure 520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCCCAACCGCAAGCCATCATGATGCGTCCAATCTGCCTCCTCCTCTCCCTCTTTCTCTTTGGTTTTCTCCTCGCTGGTGGCGCTGTTTCCTTCGATGCTTCCTTCGGTCCAGTAACTGGTGCACGCTGGCCCGTTAACATCAACGACCCCGAGGTGAAAGAGATTGCCGAGTTCGCTGTCTCCGAGTTCAATAAGCAATCCGGGAAAACGTTGGTGTTCCAGAAAGTGGTCAGTGGCCTTGATCAGGACGTAGAAGGAGTGAGTTATTATCTTGTCATTGCGGTCAGGGATGAGTCCTTGCCTACTAGCCCAATTCTGAATTATGAGTGTCATGTCTGGGATAGAAGGATTCCAGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010225 GO:0010421 GO:0010467 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016485 GO:0016540 GO:0016787 GO:0019538 GO:0030054 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051604 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0071944 GO:0097237 GO:0097468 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

121

Amino Acids

13.39

Weight (kDa)

4.81

Isoelectric Point (pI)

64.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	45 - 102	7.9e-11	Cystatin domain
SQAPI	PF16845	47 - 116	6.7e-19	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79320 AT1G79330 AT1G79340
fragaria_vesca	FvH4_3g13930
malus_domestica	MD10G1218100.v1.1
prunus_persica	Prupe.4G126000_v2.0.a1
pyrus_communis	pycom05g21610 pycom10g18390
rosa_chinensis	RchiOBHm_Chr5g0023131 RchiOBHm_Chr5g0023141
rosa_laevigata	RLG00000032701 RLG00000032702
rosa_multiflora	Rmu_co8416803.1_g000001 Rmu_co8502493.1_g000001 Rmu_sc0007300.1_g000020 Rmu_sc0015109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056200 Rroxscaffold_1G00056210
rosa_rugosa	Rorug05G0077400 Rorug05G0077500
rosa_samantha	Rh5AG163500 Rh5AG163700 Rh5BG162800 Rh5BG162900 Rh5CG177700 Rh5CG177900 Rh5DG164100 Rh5DG164300
rosa_wichuraiana	Rw5G014750 Rw5G014770 Rw5G015050 Rw5G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	119, 229
AciI	CCGC	2 cut(s)	11, 284
AclI	AACGTT	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
AgsI	TTSAA	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	131, 238
ApaLI	GTGCAC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	110, 132
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	110, 132
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	2 cut(s)	15, 88
BpuMI	CCSGG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 229, 247
Bse1I	ACTGG	3 cut(s)	113, 124, 356
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	3 cut(s)	113, 124, 356
BseRI	GAGGAG	3 cut(s)	32, 35, 62
BseSI	GKGCMC	1 cut(s)	127
BshFI	GGCC	2 cut(s)	133, 240
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	133, 240
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	11, 284
BspANI	GGCC	2 cut(s)	133, 240
BspHI	TCATGA	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	113, 124, 356
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	244
BstC8I	GCNNGC	3 cut(s)	15, 127, 131
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
BstSCI	CCNGG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	133, 240
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	15, 127, 131
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	110, 132
CseI	GACGC	1 cut(s)	17
CviAII	CATG	2 cut(s)	22, 335
CviJI	RGCY	4 cut(s)	17, 133, 240, 312
CviKI_1	RGCY	4 cut(s)	17, 133, 240, 312
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	245
FaeI	CATG	2 cut(s)	25, 338
FaiI	YATR	3 cut(s)	23, 327, 336
FatI	CATG	2 cut(s)	21, 334
FbaI	TGATCA	1 cut(s)	244
FokI	GGATG	1 cut(s)	305
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	133, 240
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	25, 338
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	296, 352
HpaI	GTTAAC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	125, 139
Hpy188I	TCNGA	2 cut(s)	187, 321
Hpy188III	TCNNGA	4 cut(s)	22, 223, 248, 363
Hpy8I	GTNNAC	2 cut(s)	125, 139
HpyAV	CCTTC	4 cut(s)	103, 115, 251, 342
HpyCH4IV	ACGT	2 cut(s)	212, 252
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
HpySE526I	ACGT	2 cut(s)	212, 252
Hsp92II	CATG	2 cut(s)	25, 338
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	9 cut(s)	63, 105, 115, 126, 217, 233, 236, 274, 325
LweI	GCATC	2 cut(s)	15, 88
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	212, 252
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	2 cut(s)	315, 322
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	6 cut(s)	50, 53, 56, 62, 83, 148
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	25, 338
NmeAIII	GCCGAG	1 cut(s)	196
PagI	TCATGA	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	352
PflMI	CCANNNNNTGG	2 cut(s)	119, 229
PfoI	TCCNGGA	1 cut(s)	203
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	110, 132
PstNI	CAGNNNCTG	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	110, 132
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	3 cut(s)	159, 215, 255
SfaNI	GCATC	2 cut(s)	15, 88
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	315, 322
SsiI	CCGC	2 cut(s)	11, 284
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	203
TaiI	ACGT	2 cut(s)	215, 255
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	315, 322
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	241
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	2 cut(s)	119, 229
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	245
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.