Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416803.1

Orthogroup ID

OG0004336

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 949

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 896 bp

atgatgacttcagggagtttgtgaacgagctgccggaaggttgccggctgactattgtgtcggattcgtgccacagcggggggctaattgatcaatctatagagcagataggcgaaagccacaaggggcaacagagtgaatctagcttcggtcatgggatcaagaactttctgaaggagcgcacaggagatgcactcgagtctcgtggaatccaccttccttccgcatttcgccgccatggacgcgatgaggaagagtctgaggacagagagattgaccttggagatggtgagtggggaaatatcaagagcagagagctgccactctcaactctcatagaggtgctcaagcagaagacaggtaagactgatattgatgttgggaagctgaggccaacactgtttgatgtcttcggagatgatgctagtcccaaggtgaagaagttcatgaaggtcatcttgaacaaactccagaaccacgagggtgaaggcagtggtgggttgatggggaagataggaggcctggctcaagagtttcttagaaaaaagctcgaagagaacgaggagtatgcaaagccagctttagacacagaaatgggtggcaaggaagaggtttatgccggagcatctcgtcgtgctagtcctgacggcgggattctcatcagtggctgtcagacggaccagacttctgctgatgccactccttcaggagatccgtcccaagcttatggagctcttagtaatgcaattcagaccatactcgctgaagaaggtggtgaaatatcaaaccaaaggcttgttcacagggcaagggagattctgaagggacagggttacaagcagcgacctgggctttattgcagcgaccatcacaccgatgcgccttttgtgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010225 GO:0010421 GO:0010467 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016485 GO:0016540 GO:0016787 GO:0019538 GO:0030054 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051604 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0071944 GO:0097237 GO:0097468 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

297

Amino Acids

32.45

Weight (kDa)

5.18

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79320 AT1G79330 AT1G79340
fragaria_vesca	FvH4_3g13930
malus_domestica	MD10G1218100.v1.1
prunus_persica	Prupe.4G126000_v2.0.a1
pyrus_communis	pycom05g21610 pycom10g18390
rosa_chinensis	RchiOBHm_Chr5g0023131 RchiOBHm_Chr5g0023141
rosa_laevigata	RLG00000032701 RLG00000032702
rosa_multiflora	Rmu_co8416803.1_g000001 Rmu_co8502493.1_g000001 Rmu_sc0007300.1_g000020 Rmu_sc0015109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056200 Rroxscaffold_1G00056210
rosa_rugosa	Rorug05G0077400 Rorug05G0077500
rosa_samantha	Rh5AG163500 Rh5AG163700 Rh5BG162800 Rh5BG162900 Rh5CG177700 Rh5CG177900 Rh5DG164100 Rh5DG164300
rosa_wichuraiana	Rw5G014750 Rw5G014770 Rw5G015050 Rw5G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	57
AccII	CGCG	1 cut(s)	245
AciI	CCGC	4 cut(s)	77, 224, 234, 650
AclWI	GGATC	2 cut(s)	166, 706
AcuI	CTGAAG	4 cut(s)	193, 689, 785, 841
AfiI	CCNNNNNNNGG	2 cut(s)	78, 649
AgsI	TTSAA	1 cut(s)	462
AjnI	CCWGG	2 cut(s)	521, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	8 cut(s)	30, 146, 318, 387, 549, 580, 724, 733
AluI	AGCT	8 cut(s)	30, 146, 318, 387, 549, 580, 724, 733
Alw21I	GWGCWC	2 cut(s)	347, 735
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	166, 706
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	2 cut(s)	391, 519
ApeKI	GCWGC	4 cut(s)	30, 318, 840, 860
Asp700I	GAANNNNTTC	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	182, 882
AspS9I	GGNCC	1 cut(s)	678
AsuHPI	GGTGA	4 cut(s)	301, 447, 496, 787
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	735
BauI	CACGAG	2 cut(s)	203, 478
BbsI	GAAGAC	2 cut(s)	361, 402
Bbv12I	GWGCWC	2 cut(s)	347, 735
BbvCI	CCTCAGC	1 cut(s)	388
BbvI	GCAGC	4 cut(s)	17, 305, 852, 872
BccI	CCATC	3 cut(s)	280, 498, 875
BceAI	ACGGC	1 cut(s)	663
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciT130I	CCWGG	2 cut(s)	523, 848
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	3 cut(s)	143, 425, 638
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	5 cut(s)	31, 234, 319, 841, 861
BlsI	GCNGC	5 cut(s)	32, 235, 320, 842, 862
Bme1390I	CCNGG	2 cut(s)	523, 848
Bme18I	GGWCC	1 cut(s)	678
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	678
BmrFI	CCNGG	2 cut(s)	523, 848
BmsI	GCATC	5 cut(s)	180, 411, 634, 684, 867
BpiI	GAAGAC	2 cut(s)	361, 402
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	388
BpuEI	CTTGAG	2 cut(s)	331, 512
BsaBI	GATNNNNATC	1 cut(s)	658
BsaJI	CCNNGG	4 cut(s)	237, 279, 431, 847
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 649
Bse118I	RCCGGY	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	658
BseBI	CCWGG	2 cut(s)	523, 848
BseDI	CCNNGG	4 cut(s)	237, 279, 431, 847
BseJI	GATNNNNATC	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	78, 649
BseMII	CTCAG	2 cut(s)	251, 379
BseRI	GAGGAG	1 cut(s)	577
BseXI	GCAGC	4 cut(s)	17, 305, 852, 872
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	393, 521
BsiHKAI	GWGCWC	2 cut(s)	347, 735
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	34, 45, 620
BslFI	GGGAC	3 cut(s)	413, 702, 839
BslI	CCNNNNNNNGG	2 cut(s)	78, 649
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	3 cut(s)	413, 702, 839
BsnI	GGCC	2 cut(s)	393, 521
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	347, 735
Bsp143I	GATC	3 cut(s)	90, 158, 711
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	4 cut(s)	77, 224, 234, 650
BspANI	GGCC	2 cut(s)	393, 521
BspCNI	CTCAG	2 cut(s)	252, 380
BspFNI	CGCG	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	446
BspPI	GGATC	2 cut(s)	166, 706
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	4 cut(s)	237, 279, 431, 847
BssMI	GATC	3 cut(s)	90, 158, 711
BssSI	CACGAG	2 cut(s)	203, 478
BssT1I	CCWWGG	3 cut(s)	237, 279, 431
Bst2BI	CACGAG	2 cut(s)	203, 478
Bst2UI	CCWGG	2 cut(s)	523, 848
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	3 cut(s)	248, 548, 602
BstC8I	GCNNGC	2 cut(s)	46, 578
BstDEI	CTNAG	4 cut(s)	260, 388, 538, 736
BstDSI	CCRYGG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	182, 882
BstKTI	GATC	3 cut(s)	93, 161, 714
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	90, 158, 711
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 577, 730, 849
BstNI	CCWGG	2 cut(s)	523, 848
BstSCI	CCNGG	2 cut(s)	521, 846
BstSFI	CTRYAG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	4 cut(s)	17, 305, 852, 872
BstV2I	GAAGAC	2 cut(s)	361, 402
BstX2I	RGATCY	1 cut(s)	711
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	393, 521
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	397, 498, 669
Cac8I	GCNNGC	2 cut(s)	46, 578
CaiI	CAGNNNCTG	1 cut(s)	668
CciI	TCATGA	1 cut(s)	446
CfoI	GCGC	2 cut(s)	182, 882
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	678
CseI	GACGC	1 cut(s)	251
CviAII	CATG	3 cut(s)	154, 238, 447
DdeI	CTNAG	4 cut(s)	260, 388, 538, 736
DpnI	GATC	3 cut(s)	92, 160, 713
DpnII	GATC	3 cut(s)	90, 158, 711
DrdI	GACNNNNNNGTC	1 cut(s)	57
DseDI	GACNNNNNNGTC	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	248, 548, 602
EarI	CTCTTC	3 cut(s)	248, 548, 602
Ecl136II	GAGCTC	1 cut(s)	733
Eco130I	CCWWGG	3 cut(s)	237, 279, 431
Eco147I	AGGCCT	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	4 cut(s)	193, 689, 785, 841
Eco88I	CYCGRG	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	733
EcoRII	CCWGG	2 cut(s)	521, 846
EcoT14I	CCWWGG	3 cut(s)	237, 279, 431
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	3 cut(s)	237, 279, 431
FaeI	CATG	3 cut(s)	157, 241, 450
FaiI	YATR	9 cut(s)	100, 155, 239, 337, 448, 569, 617, 728, 757
FalI	AAGNNNNNCTT	4 cut(s)	442, 474, 521, 553
FaqI	GGGAC	3 cut(s)	413, 702, 839
FatI	CATG	3 cut(s)	153, 237, 446
FauI	CCCGC	2 cut(s)	70, 643
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	31, 234, 319, 841, 861
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	5 cut(s)	31, 234, 319, 841, 861
FspBI	CTAG	3 cut(s)	143, 425, 638
GlaI	GCGC	2 cut(s)	181, 881
GluI	GCNGC	5 cut(s)	31, 234, 319, 841, 861
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	393, 521
HapII	CCGG	3 cut(s)	34, 45, 620
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	182, 882
Hin1II	CATG	3 cut(s)	157, 241, 450
Hin6I	GCGC	2 cut(s)	180, 880
HinP1I	GCGC	2 cut(s)	180, 880
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	7 cut(s)	64, 139, 199, 209, 256, 654, 816
HpaII	CCGG	3 cut(s)	34, 45, 620
HphI	GGTGA	4 cut(s)	301, 447, 496, 787
Hpy166II	GTNNAC	2 cut(s)	24, 801
Hpy188I	TCNGA	7 cut(s)	63, 173, 261, 415, 674, 752, 821
Hpy188III	TCNNGA	8 cut(s)	162, 306, 447, 459, 471, 529, 643, 707
Hpy8I	GTNNAC	2 cut(s)	24, 801
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	9 cut(s)	31, 168, 226, 230, 444, 481, 713, 763, 816
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	4 cut(s)	193, 571, 745, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 577, 730, 849
HpyF3I	CTNAG	4 cut(s)	260, 388, 538, 736
Hsp92II	CATG	3 cut(s)	157, 241, 450
HspAI	GCGC	2 cut(s)	180, 880
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 158, 711
LmnI	GCTCC	3 cut(s)	177, 622, 730
Lsp1109I	GCAGC	4 cut(s)	17, 305, 852, 872
LweI	GCATC	5 cut(s)	180, 411, 634, 684, 867
MaeI	CTAG	3 cut(s)	143, 425, 638
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	3 cut(s)	92, 160, 713
MboI	GATC	3 cut(s)	90, 158, 711
MboII	GAAGA	8 cut(s)	265, 366, 402, 450, 522, 565, 619, 778
MflI	RGATCY	1 cut(s)	711
MhlI	GDGCHC	2 cut(s)	347, 735
MluCI	AATT	2 cut(s)	86, 746
MlyI	GAGTC	2 cut(s)	208, 265
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	8 cut(s)	243, 255, 333, 383, 474, 511, 555, 603
MroNI	GCCGGC	1 cut(s)	44
MroXI	GAANNNNTTC	1 cut(s)	442
MslI	CAYNNNNRTG	4 cut(s)	340, 482, 592, 875
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	3 cut(s)	34, 45, 620
MspR9I	CCNGG	2 cut(s)	523, 848
MvaI	CCWGG	2 cut(s)	523, 848
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	242, 577, 730, 849
NaeI	GCCGGC	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	90, 158, 711
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	157, 241, 450
OliI	CACNNNNGTG	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	196
PagI	TCATGA	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PdiI	GCCGGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	5 cut(s)	64, 139, 209, 654, 816
PkrI	GCNGC	5 cut(s)	32, 235, 320, 842, 862
PleI	GAGTC	2 cut(s)	207, 264
PpsI	GAGTC	2 cut(s)	207, 264
Psp124BI	GAGCTC	1 cut(s)	735
Psp6I	CCWGG	2 cut(s)	521, 846
PspGI	CCWGG	2 cut(s)	521, 846
PspPI	GGNCC	1 cut(s)	678
PspXI	VCTCGAGB	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	711
RseI	CAYNNNNRTG	4 cut(s)	340, 482, 592, 875
SacI	GAGCTC	1 cut(s)	735
SatI	GCNGC	5 cut(s)	31, 234, 319, 841, 861
Sau3AI	GATC	3 cut(s)	90, 158, 711
Sau96I	GGNCC	1 cut(s)	678
SchI	GAGTC	2 cut(s)	208, 265
ScrFI	CCNGG	2 cut(s)	523, 848
SduI	GDGCHC	2 cut(s)	347, 735
SfaNI	GCATC	5 cut(s)	180, 411, 634, 684, 867
SfcI	CTRYAG	1 cut(s)	98
Sfr274I	CTCGAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	678
SlaI	CTCGAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	4 cut(s)	340, 482, 592, 875
SmlI	CTYRAG	3 cut(s)	196, 346, 527
SmoI	CTYRAG	3 cut(s)	196, 346, 527
Sse9I	AATT	2 cut(s)	86, 746
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	4 cut(s)	77, 224, 234, 650
SspMI	CTAG	3 cut(s)	143, 425, 638
SstI	GAGCTC	1 cut(s)	735
StuI	AGGCCT	1 cut(s)	521
StyD4I	CCNGG	2 cut(s)	521, 846
StyI	CCWWGG	3 cut(s)	237, 279, 431
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	197, 551
TaqII	GACCGA	1 cut(s)	139
TasI	AATT	2 cut(s)	86, 746
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	5 cut(s)	64, 139, 209, 654, 816
TscAI	CASTG	3 cut(s)	404, 498, 669
TseI	GCWGC	4 cut(s)	30, 318, 840, 860
TspDTI	ATGAA	2 cut(s)	435, 463
TspGWI	ACGGA	2 cut(s)	691, 704
TspRI	CASTG	3 cut(s)	404, 498, 669
VpaK11BI	GGWCC	1 cut(s)	678
XhoI	CTCGAG	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	3 cut(s)	143, 425, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.