Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004336

Physical Location & Seq

Genomic Coordinates Forward (+)

6709862 .. 6712615

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0077400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCATCCCAGACCAGTTTGCAGTGAAGACGAAGGCCAAAGAGATCGAGGTCAGAGGTCTGGGCAGCGTGGTCGACTGCAAAGTGGTAGTCCGATCAAGGTCGACTGGAAAGTGGTTACCGGCGAGTCCACCCGACTGGAAAGTGGTCCGGGATGTTCAGAGAGTTCGTCCGGCAACCGCAGCGCAGCCATCGCCGCCTTCTCAACGCTGGAGGAGGGACCTCTTACAAAGGTCACACTCTCTATCTATGGGAGAATATCATCAGAGACTTCGATATATTTTGGTTGTTGTCTTTCTCTTGATGGTGGTATGGTGGTGATAGTAGCAGTAGCTGTACTCGACTGGAGAGAAAATCGAATTAGGACGAAGATCTCTATAGTCTATACATTCTTTGAACCAGAGCTTCCTTCCGAGGTACCAGTGCAAACTATTCCTCGACCCACATCAGTACCAACTCCTGTCAACCCGTCTTTGCCCAAGACCTCAACGGGTAAAAGTGGTTCGAAGGGATCCCGCTTTAAGAAGCAACGATCATTGTCAACTTTAGTAAAGAGAGCTAATATTGGAATTGTACGTGCTTGGAGGCCAACATTAATGCGTGATAAAATGTCTCTGCATGAAGGTTCTTCAGTGCTTGACCTCAAGGGTGACAACTACTTCTCTTGTGCTGTTGGGAGAAAGCGATCCAGTGCAAGATATCTCCTTAACTCGTCAGACCAATACCTGCCCGCTCAGAAGATGATGCAATGCCTCTCGATTCAGAAGGTGAGCACTGCCTCTCCACTCAGAAAGAGGAGCAGTGCCTCTGAACTCAGAAGGTGGAGAACAAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010225 GO:0010421 GO:0010467 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016485 GO:0016540 GO:0016787 GO:0019538 GO:0030054 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051604 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0071944 GO:0097237 GO:0097468 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

278

Amino Acids

30.6

Weight (kDa)

10.09

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79320 AT1G79330 AT1G79340
fragaria_vesca	FvH4_3g13930
malus_domestica	MD10G1218100.v1.1
prunus_persica	Prupe.4G126000_v2.0.a1
pyrus_communis	pycom05g21610 pycom10g18390
rosa_chinensis	RchiOBHm_Chr5g0023131 RchiOBHm_Chr5g0023141
rosa_laevigata	RLG00000032701 RLG00000032702
rosa_multiflora	Rmu_co8416803.1_g000001 Rmu_co8502493.1_g000001 Rmu_sc0007300.1_g000020 Rmu_sc0015109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056200 Rroxscaffold_1G00056210
rosa_rugosa	Rorug05G0077400 Rorug05G0077500
rosa_samantha	Rh5AG163500 Rh5AG163700 Rh5BG162800 Rh5BG162900 Rh5CG177700 Rh5CG177900 Rh5DG164100 Rh5DG164300
rosa_wichuraiana	Rw5G014750 Rw5G014770 Rw5G015050 Rw5G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	732
Acc65I	GGTACC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	731
AccI	GTMKAC	2 cut(s)	73, 102
AciI	CCGC	4 cut(s)	178, 195, 514, 729
AclWI	GGATC	3 cut(s)	504, 517, 678
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	4 cut(s)	336, 417, 450, 573
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	3 cut(s)	332, 403, 557
AluI	AGCT	3 cut(s)	332, 403, 557
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	2 cut(s)	260, 615
AlwI	GGATC	3 cut(s)	504, 517, 678
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	34, 584
ApeKI	GCWGC	3 cut(s)	64, 180, 185
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AseI	ATTAAT	1 cut(s)	593
Asp718I	GGTACC	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	146, 218
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	328, 659, 778
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	146, 218
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BamHI	GGATCC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	3 cut(s)	76, 192, 197
BccI	CCATC	2 cut(s)	197, 296
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	260, 615
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	732
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	4 cut(s)	65, 181, 186, 195
BlsI	GCNGC	4 cut(s)	66, 182, 187, 196
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	2 cut(s)	146, 218
BmgT120I	GGNCC	2 cut(s)	146, 218
BmiI	GGNNCC	3 cut(s)	219, 417, 511
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	13, 732
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	2 cut(s)	230, 364
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	6 cut(s)	14, 110, 141, 347, 419, 687
Bse3DI	GCAATG	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	2 cut(s)	4, 158
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	3 cut(s)	746, 799, 826
BseNI	ACTGG	6 cut(s)	14, 110, 141, 347, 419, 687
BseRI	GAGGAG	2 cut(s)	227, 808
BseXI	GCAGC	3 cut(s)	76, 192, 197
BshFI	GGCC	2 cut(s)	36, 586
BshNI	GGYRCC	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	773
BsiSI	CCGG	3 cut(s)	120, 149, 171
BslFI	GGGAC	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	260, 615
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	36, 586
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp143I	GATC	6 cut(s)	43, 93, 369, 509, 530, 683
BspACI	CCGC	4 cut(s)	178, 195, 514, 729
BspANI	GGCC	2 cut(s)	36, 586
BspCNI	CTCAG	3 cut(s)	745, 798, 825
BspLI	GGNNCC	3 cut(s)	219, 417, 511
BspMI	ACCTGC	1 cut(s)	732
BspPI	GGATC	3 cut(s)	504, 517, 678
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	752
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	6 cut(s)	14, 110, 141, 347, 419, 687
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	6 cut(s)	43, 93, 369, 509, 530, 683
BstBAI	YACGTR	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	3 cut(s)	732, 785, 812
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	4, 158
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	6 cut(s)	46, 96, 372, 512, 533, 686
BstMAI	GTCTC	2 cut(s)	260, 615
BstMBI	GATC	6 cut(s)	43, 93, 369, 509, 530, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 191, 194
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	76, 192, 197
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	2 cut(s)	369, 509
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	2 cut(s)	369, 509
BsuRI	GGCC	2 cut(s)	36, 586
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	4, 158
BtsI	GCAGTG	3 cut(s)	28, 771, 805
BtsIMutI	CAGTG	6 cut(s)	28, 426, 636, 694, 771, 805
BveI	ACCTGC	1 cut(s)	732
Cac8I	GCNNGC	1 cut(s)	729
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	146, 218
Csp6I	GTAC	4 cut(s)	335, 416, 449, 572
CviAII	CATG	1 cut(s)	617
CviJI	RGCY	6 cut(s)	36, 188, 332, 403, 557, 586
CviKI_1	RGCY	6 cut(s)	36, 188, 332, 403, 557, 586
CviQI	GTAC	4 cut(s)	335, 416, 449, 572
DdeI	CTNAG	3 cut(s)	732, 785, 812
DpnI	GATC	6 cut(s)	45, 95, 371, 511, 532, 685
DpnII	GATC	6 cut(s)	43, 93, 369, 509, 530, 683
Eco32I	GATATC	1 cut(s)	698
Eco47I	GGWCC	2 cut(s)	146, 218
Eco57I	CTGAAG	1 cut(s)	612
Eco91I	GGTNACC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	698
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	620
FaiI	YATR	6 cut(s)	249, 277, 311, 377, 384, 618
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	616
FauI	CCCGC	2 cut(s)	521, 736
FblI	GTMKAC	2 cut(s)	73, 102
Fnu4HI	GCNGC	4 cut(s)	65, 181, 186, 195
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	4 cut(s)	65, 181, 186, 195
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	4 cut(s)	65, 181, 186, 195
GsuI	CTGGAG	2 cut(s)	230, 364
HaeIII	GGCC	2 cut(s)	36, 586
HapII	CCGG	3 cut(s)	120, 149, 171
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	620
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	4 cut(s)	74, 103, 463, 540
HindII	GTYRAC	4 cut(s)	74, 103, 463, 540
HinfI	GANTC	2 cut(s)	125, 757
HpaII	CCGG	3 cut(s)	120, 149, 171
HphI	GGTGA	3 cut(s)	328, 659, 778
Hpy166II	GTNNAC	5 cut(s)	74, 103, 129, 463, 540
Hpy188III	TCNNGA	2 cut(s)	299, 754
Hpy8I	GTNNAC	5 cut(s)	74, 103, 129, 463, 540
HpyAV	CCTTC	7 cut(s)	26, 208, 417, 499, 614, 757, 810
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	7 cut(s)	4, 21, 79, 424, 616, 692, 745
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 191, 194
HpyF3I	CTNAG	3 cut(s)	732, 785, 812
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	1 cut(s)	620
HspAI	GCGC	1 cut(s)	183
KpnI	GGTACC	1 cut(s)	419
Kzo9I	GATC	6 cut(s)	43, 93, 369, 509, 530, 683
LmnI	GCTCC	1 cut(s)	795
Lsp1109I	GCAGC	3 cut(s)	76, 192, 197
LweI	GCATC	2 cut(s)	13, 732
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	3 cut(s)	115, 232, 647
MalI	GATC	6 cut(s)	45, 95, 371, 511, 532, 685
MbiI	CCGCTC	1 cut(s)	731
MboI	GATC	6 cut(s)	43, 93, 369, 509, 530, 683
MboII	GAAGA	4 cut(s)	38, 379, 618, 748
MflI	RGATCY	2 cut(s)	369, 509
MhlI	GDGCHC	1 cut(s)	773
MluCI	AATT	3 cut(s)	357, 567, 829
MlyI	GAGTC	1 cut(s)	134
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	519, 593, 705
MspI	CCGG	3 cut(s)	120, 149, 171
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	180, 191, 194
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	6 cut(s)	43, 93, 369, 509, 530, 683
NlaIII	CATG	1 cut(s)	620
NlaIV	GGNNCC	3 cut(s)	219, 417, 511
NmuCI	GTSAC	2 cut(s)	232, 647
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	757
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	66, 182, 187, 196
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	575
PpuMI	RGGWCCY	1 cut(s)	218
PshBI	ATTAAT	1 cut(s)	593
Psp5II	RGGWCCY	1 cut(s)	218
PspEI	GGTNACC	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	219, 417, 511
PspPI	GGNCC	2 cut(s)	146, 218
PspPPI	RGGWCCY	1 cut(s)	218
PsrI	GAACNNNNNNTAC	2 cut(s)	484, 516
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	369, 509
RsaI	GTAC	4 cut(s)	336, 417, 450, 573
RsaNI	GTAC	4 cut(s)	335, 416, 449, 572
SalI	GTCGAC	2 cut(s)	72, 101
SaqAI	TTAA	3 cut(s)	519, 593, 705
SatI	GCNGC	4 cut(s)	65, 181, 186, 195
Sau3AI	GATC	6 cut(s)	43, 93, 369, 509, 530, 683
Sau96I	GGNCC	2 cut(s)	146, 218
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	2 cut(s)	13, 732
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	2 cut(s)	146, 218
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	3 cut(s)	357, 567, 829
SsiI	CCGC	4 cut(s)	178, 195, 514, 729
SspI	AATATT	1 cut(s)	562
StyD4I	CCNGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	9 cut(s)	46, 73, 102, 272, 339, 355, 436, 503, 755
TasI	AATT	3 cut(s)	357, 567, 829
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	757
Tru1I	TTAA	3 cut(s)	519, 593, 705
Tru9I	TTAA	3 cut(s)	519, 593, 705
TscAI	CASTG	6 cut(s)	28, 426, 636, 694, 778, 805
TseFI	GTSAC	2 cut(s)	232, 647
TseI	GCWGC	3 cut(s)	64, 180, 185
Tsp45I	GTSAC	2 cut(s)	232, 647
TspDTI	ATGAA	1 cut(s)	633
TspRI	CASTG	6 cut(s)	28, 426, 636, 694, 778, 805
VpaK11BI	GGWCC	2 cut(s)	146, 218
VspI	ATTAAT	1 cut(s)	593
XmiI	GTMKAC	2 cut(s)	73, 102
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.