Prupe.4G126000_v2.0.a1

Caspase domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
6904262 .. 6906541
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G126000.1

Sequence Viewer

Length: 1242 bp
ATGGCGAAGAAGGCAGTGCTGATAGGATGCAACTACCAGGGAACCAAGGCAGAGCTGAAGGGCTGCATTAACGACGTGAAGAGGATGCACAGCTGCCTTGTGGACATATATGGCTTCCGTGAAGATGACATCCAAGTTTTGATCGACTCAGATTCCTCCTACACTCAGCCCACCGGGAGAAACATCCGCCGGGCCATCACCAACCTCATCCGATCTGCCGATTCCGGAGATGTCCTCTTTGTCCACTACAGCGGCCATGGCACCCGCCTTCCTGCTGAGACTGGCGATGACGATGACACTGGCTATGATGAGTGCATCGTCCCCACTGACATGAACCTCATCACTGATGATGACTTCAGGGAGTTTGTAGACCAGCTGCCAGCAGGTTGCCGGCTGACAATGGTATCAGATTCTTGCCACAGCGGCGGCCTTATTGATGAAGCTAAAGAGCAGATAGGGGAGAGCACCAAAGGGGAAGAGCGCAAGTCTAGCTCTGGTTTTGGTGGATTCAAGAACTTCCTCAAGGACAGGGCAGAAGATGCACTTGAGTCTCGTGGAATCCACATCCCGTCTGCATTGCGCCCCGATCGGCACCATGAAGAGGAGTCTGATGACAGAGAAATTGAAACTGGATATGGGCACAGGGGCTATGTCAAAAGCAGGTCTCTGCCACTCTCAACTCTTATAGAGATACTCAAGCAGAAAACAGGGAAGGATGACATTGATGTTGGGAAGCTGAGGCCAACACTCTTCGATGTTTTCGGAGAAGATGCCAGTCCTAAGGTGAAAAAGTTCATGAAGGTCATCATGAACAAACTCCAAAACAATGAGGGCAGCAGCGGTGGGTTATTGGGGAAGATTGGAAGCTTGGCTCAAGGGTTTCTTGAACAAAAGCTTCAAGATAACGATGAGTATGCAAAGCCTGCTTTAGAGACACAAGTGGGTAGCAAGCAAGAGGTTTACGCCGGAGCAAACCACCGCGCCATTCCTGATGGCGGGATTCTCATCAGTGGTTGCCAGACGGACCAAACTTCTGCAGATGCCAGTCCTTCCGGAAATCCGACGGAAGCTTATGGGGCTCTTAGCAATGCCATTCAGATCATACTCTCTGAAAGAGATGGTGAAGTTACAAACCACCAGCTTGTTCTCAAGGCAAGGGAGACTCTGAAGAGGCAGGGTTACACTCAGCGACCTGGCCTCTATTGCCATGACCACCATGTCGATGCTCCTTTTGTGTGCTGA

Protein Analysis

414

Amino Acids

45.33

Weight (kDa)

5.25

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1217
Acc36I ACCTGC 2 cut(s) 374, 651
AccB1I GGYRCC 2 cut(s) 260, 591
AccI GTMKAC 1 cut(s) 369
AccII CGCG 1 cut(s) 981
AccIII TCCGGA 2 cut(s) 224, 1052
AciI CCGC 8 cut(s) 187, 252, 265, 423, 426, 840, 979, 996
AcoI YGGCCR 1 cut(s) 253
AcuI CTGAAG 3 cut(s) 77, 340, 1187
AfiI CCNNNNNNNGG 2 cut(s) 601, 995
AgsI TTSAA 4 cut(s) 511, 626, 887, 899
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 2 cut(s) 36, 1192
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 5 cut(s) 272, 555, 669, 926, 1154
Aor13HI TCCGGA 2 cut(s) 224, 1052
AoxI GGCC 5 cut(s) 192, 253, 427, 740, 1195
ApeKI GCWGC 5 cut(s) 63, 93, 376, 834, 837
Asp700I GAANNNNTTC 1 cut(s) 791
AspLEI GCGC 3 cut(s) 483, 582, 983
AspS9I GGNCC 2 cut(s) 192, 1024
AsuC2I CCSGG 2 cut(s) 175, 191
AsuHPI GGTGA 3 cut(s) 190, 796, 1133
AvaII GGWCC 1 cut(s) 1024
AxyI CCTNAGG 1 cut(s) 780
BaeGI GKGCMC 1 cut(s) 642
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BanI GGYRCC 2 cut(s) 260, 591
BanII GRGCYC 1 cut(s) 1081
BauI CACGAG 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 467
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 5 cut(s) 50, 80, 363, 846, 849
BccI CCATC 3 cut(s) 203, 986, 1112
BcgI CGANNNNNNTGC 2 cut(s) 896, 930
BciT130I CCWGG 2 cut(s) 38, 1194
BcnI CCSGG 2 cut(s) 175, 191
BcoDI GTCTC 5 cut(s) 272, 555, 669, 926, 1154
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 2 cut(s) 247, 1035
BfuAI ACCTGC 2 cut(s) 374, 651
BglI GCCNNNNNGGC 1 cut(s) 423
BisI GCNGC 8 cut(s) 64, 94, 253, 377, 424, 427, 835, 838
BlsI GCNGC 8 cut(s) 65, 95, 254, 378, 425, 428, 836, 839
Bme1390I CCNGG 4 cut(s) 38, 175, 191, 1194
Bme18I GGWCC 1 cut(s) 1024
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 192, 1024
BmiI GGNNCC 3 cut(s) 43, 262, 593
BmrFI CCNGG 4 cut(s) 38, 175, 191, 1194
BmsI GCATC 7 cut(s) 17, 75, 324, 529, 760, 1030, 1213
BplI GAGNNNNNCTC 2 cut(s) 219, 251
Bpu10I CCTNAGC 1 cut(s) 737
BpuEI CTTGAG 5 cut(s) 506, 566, 680, 858, 1133
BpuMI CCSGG 2 cut(s) 175, 191
BsaBI GATNNNNATC 1 cut(s) 1004
BsaI GGTCTC 1 cut(s) 669
BsaJI CCNNGG 3 cut(s) 37, 45, 256
BsaWI WCCGGW 2 cut(s) 224, 1052
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 995
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 5 cut(s) 286, 304, 634, 774, 1044
Bse21I CCTNAGG 1 cut(s) 780
Bse3DI GCAATG 2 cut(s) 575, 1093
Bse8I GATNNNNATC 1 cut(s) 1004
BseAI TCCGGA 2 cut(s) 224, 1052
BseBI CCWGG 2 cut(s) 38, 1194
BseDI CCNNGG 3 cut(s) 37, 45, 256
BseGI GGATG 7 cut(s) 32, 90, 129, 183, 207, 564, 721
BseJI GATNNNNATC 1 cut(s) 1004
BseLI CCNNNNNNNGG 2 cut(s) 601, 995
BseMI GCAATG 2 cut(s) 575, 1093
BseMII CTCAG 5 cut(s) 162, 179, 267, 728, 1199
BseNI ACTGG 5 cut(s) 286, 304, 634, 774, 1044
BseRI GAGGAG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 642
BseXI GCAGC 5 cut(s) 50, 80, 363, 846, 849
Bsh1236I CGCG 1 cut(s) 981
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 5 cut(s) 194, 255, 429, 742, 1197
BshNI GGYRCC 2 cut(s) 260, 591
BsiEI CGRYCG 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 6 cut(s) 174, 190, 225, 391, 966, 1053
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 601, 995
BsmAI GTCTC 5 cut(s) 272, 555, 669, 926, 1154
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 5 cut(s) 194, 255, 429, 742, 1197
Bso31I GGTCTC 1 cut(s) 669
Bsp1286I GDGCHC 3 cut(s) 467, 642, 1081
Bsp13I TCCGGA 2 cut(s) 224, 1052
Bsp143I GATC 4 cut(s) 141, 212, 586, 1098
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 8 cut(s) 187, 252, 265, 423, 426, 840, 979, 996
BspANI GGCC 5 cut(s) 194, 255, 429, 742, 1197
BspCNI CTCAG 5 cut(s) 161, 178, 268, 729, 1198
BspEI TCCGGA 2 cut(s) 224, 1052
BspFNI CGCG 1 cut(s) 981
BspHI TCATGA 2 cut(s) 795, 807
BspLI GGNNCC 3 cut(s) 43, 262, 593
BspMAI CTGCAG 1 cut(s) 1039
BspMI ACCTGC 2 cut(s) 374, 651
BspQI GCTCTTC 1 cut(s) 471
BspT107I GGYRCC 2 cut(s) 260, 591
BspTNI GGTCTC 1 cut(s) 669
BsrDI GCAATG 2 cut(s) 575, 1093
BsrFI RCCGGY 1 cut(s) 390
BsrI ACTGG 5 cut(s) 286, 304, 634, 774, 1044
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 3 cut(s) 37, 45, 256
BssMI GATC 4 cut(s) 141, 212, 586, 1098
BssSI CACGAG 1 cut(s) 552
BssT1I CCWWGG 2 cut(s) 45, 256
Bst2BI CACGAG 1 cut(s) 552
Bst2UI CCWGG 2 cut(s) 38, 1194
Bst6I CTCTTC 5 cut(s) 74, 471, 594, 755, 1163
BstAPI GCANNNNNTGC 2 cut(s) 539, 923
BstC8I GCNNGC 4 cut(s) 381, 392, 924, 950
BstDEI CTNAG 7 cut(s) 148, 165, 276, 737, 780, 1082, 1185
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 7 cut(s) 32, 90, 129, 183, 207, 564, 721
BstFNI CGCG 1 cut(s) 981
BstHHI GCGC 3 cut(s) 483, 582, 983
BstKTI GATC 4 cut(s) 144, 215, 589, 1101
BstMAI GTCTC 5 cut(s) 272, 555, 669, 926, 1154
BstMBI GATC 4 cut(s) 141, 212, 586, 1098
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 8 cut(s) 11, 258, 423, 489, 539, 923, 1076, 1203
BstNI CCWGG 2 cut(s) 38, 1194
BstSCI CCNGG 4 cut(s) 36, 173, 189, 1192
BstSFI CTRYAG 2 cut(s) 247, 1035
BstSLI GKGCMC 1 cut(s) 642
BstUI CGCG 1 cut(s) 981
BstV1I GCAGC 5 cut(s) 50, 80, 363, 846, 849
Bsu36I CCTNAGG 1 cut(s) 780
BsuRI GGCC 5 cut(s) 194, 255, 429, 742, 1197
BtgI CCRYGG 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 7 cut(s) 32, 90, 129, 183, 207, 564, 721
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 5 cut(s) 21, 297, 324, 342, 1015
BveI ACCTGC 2 cut(s) 374, 651
Cac8I GCNNGC 4 cut(s) 381, 392, 924, 950
CciI TCATGA 2 cut(s) 795, 807
CfoI GCGC 3 cut(s) 483, 582, 983
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 192, 1024
CviAII CATG 7 cut(s) 257, 331, 596, 796, 808, 1208, 1217
DdeI CTNAG 7 cut(s) 148, 165, 276, 737, 780, 1082, 1185
DpnI GATC 4 cut(s) 143, 214, 588, 1100
DpnII GATC 4 cut(s) 141, 212, 586, 1098
DrdI GACNNNNNNGTC 1 cut(s) 1217
DseDI GACNNNNNNGTC 1 cut(s) 1217
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 5 cut(s) 74, 471, 594, 755, 1163
EarI CTCTTC 5 cut(s) 74, 471, 594, 755, 1163
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 45, 256
Eco24I GRGCYC 1 cut(s) 1081
Eco31I GGTCTC 1 cut(s) 669
Eco47I GGWCC 1 cut(s) 1024
Eco57I CTGAAG 3 cut(s) 77, 340, 1187
Eco81I CCTNAGG 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 36, 1192
EcoT14I CCWWGG 2 cut(s) 45, 256
EcoT38I GRGCYC 1 cut(s) 1081
ErhI CCWWGG 2 cut(s) 45, 256
FaeI CATG 7 cut(s) 260, 334, 599, 799, 811, 1211, 1220
FalI AAGNNNNNCTT 4 cut(s) 528, 560, 867, 899
FaqI GGGAC 1 cut(s) 305
FatI CATG 7 cut(s) 256, 330, 595, 795, 807, 1207, 1216
FauI CCCGC 2 cut(s) 272, 989
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 8 cut(s) 64, 94, 253, 377, 424, 427, 835, 838
FokI GGATG 7 cut(s) 39, 97, 116, 170, 194, 551, 728
FriOI GRGCYC 1 cut(s) 1081
Fsp4HI GCNGC 8 cut(s) 64, 94, 253, 377, 424, 427, 835, 838
FspBI CTAG 1 cut(s) 489
GlaI GCGC 3 cut(s) 482, 581, 982
GluI GCNGC 8 cut(s) 64, 94, 253, 377, 424, 427, 835, 838
HaeIII GGCC 5 cut(s) 194, 255, 429, 742, 1197
HapII CCGG 6 cut(s) 174, 190, 225, 391, 966, 1053
HhaI GCGC 3 cut(s) 483, 582, 983
Hin1II CATG 7 cut(s) 260, 334, 599, 799, 811, 1211, 1220
Hin6I GCGC 3 cut(s) 481, 580, 981
HinP1I GCGC 3 cut(s) 481, 580, 981
HindIII AAGCTT 3 cut(s) 865, 893, 1068
HpaII CCGG 6 cut(s) 174, 190, 225, 391, 966, 1053
HphI GGTGA 3 cut(s) 190, 796, 1133
Hpy166II GTNNAC 4 cut(s) 103, 244, 370, 961
Hpy188I TCNGA 9 cut(s) 151, 212, 409, 610, 764, 1062, 1098, 1111, 1167
Hpy188III TCNNGA 8 cut(s) 225, 511, 796, 808, 884, 899, 989, 1053
Hpy8I GTNNAC 4 cut(s) 103, 244, 370, 961
Hpy99I CGWCG 2 cut(s) 77, 1066
HpyAV CCTTC 6 cut(s) 4, 52, 278, 706, 793, 1059
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 8 cut(s) 30, 66, 88, 315, 542, 575, 917, 1037
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 258, 423, 489, 539, 923, 1076, 1203
HpyF3I CTNAG 7 cut(s) 148, 165, 276, 737, 780, 1082, 1185
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 7 cut(s) 260, 334, 599, 799, 811, 1211, 1220
HspAI GCGC 3 cut(s) 481, 580, 981
Kpn2I TCCGGA 2 cut(s) 224, 1052
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
Kzo9I GATC 4 cut(s) 141, 212, 586, 1098
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 2 cut(s) 968, 1231
Lsp1109I GCAGC 5 cut(s) 50, 80, 363, 846, 849
LweI GCATC 7 cut(s) 17, 75, 324, 529, 760, 1030, 1213
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 1126, 1178
MalI GATC 4 cut(s) 143, 214, 588, 1100
MboI GATC 4 cut(s) 141, 212, 586, 1098
MhlI GDGCHC 3 cut(s) 467, 642, 1081
MluCI AATT 1 cut(s) 621
MlyI GAGTC 4 cut(s) 140, 557, 614, 1156
MmeI TCCRAC 1 cut(s) 1085
MroI TCCGGA 2 cut(s) 224, 1052
MroNI GCCGGC 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 791
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 2 cut(s) 329, 1221
MspA1I CMGCKG 5 cut(s) 93, 252, 376, 423, 840
MspI CCGG 6 cut(s) 174, 190, 225, 391, 966, 1053
MspR9I CCNGG 4 cut(s) 38, 175, 191, 1194
MvaI CCWGG 2 cut(s) 38, 1194
MvnI CGCG 1 cut(s) 981
MwoI GCNNNNNNNGC 8 cut(s) 11, 258, 423, 489, 539, 923, 1076, 1203
NaeI GCCGGC 1 cut(s) 392
NciI CCSGG 2 cut(s) 175, 191
NcoI CCATGG 1 cut(s) 256
NdeII GATC 4 cut(s) 141, 212, 586, 1098
NgoMIV GCCGGC 1 cut(s) 390
NlaIII CATG 7 cut(s) 260, 334, 599, 799, 811, 1211, 1220
NlaIV GGNNCC 3 cut(s) 43, 262, 593
PagI TCATGA 2 cut(s) 795, 807
PciSI GCTCTTC 1 cut(s) 471
PdiI GCCGGC 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 791
PfeI GAWTC 6 cut(s) 152, 221, 410, 507, 558, 1000
PkrI GCNGC 8 cut(s) 65, 95, 254, 378, 425, 428, 836, 839
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 4 cut(s) 140, 556, 613, 1156
PpsI GAGTC 4 cut(s) 140, 556, 613, 1156
Psp6I CCWGG 2 cut(s) 36, 1192
PspGI CCWGG 2 cut(s) 36, 1192
PspN4I GGNNCC 3 cut(s) 43, 262, 593
PspPI GGNCC 2 cut(s) 192, 1024
PstI CTGCAG 1 cut(s) 1039
PvuI CGATCG 1 cut(s) 589
PvuII CAGCTG 2 cut(s) 93, 376
RseI CAYNNNNRTG 2 cut(s) 329, 1221
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 8 cut(s) 64, 94, 253, 377, 424, 427, 835, 838
Sau3AI GATC 4 cut(s) 141, 212, 586, 1098
Sau96I GGNCC 2 cut(s) 192, 1024
SchI GAGTC 4 cut(s) 140, 557, 614, 1156
ScrFI CCNGG 4 cut(s) 38, 175, 191, 1194
SduI GDGCHC 3 cut(s) 467, 642, 1081
SfaNI GCATC 7 cut(s) 17, 75, 324, 529, 760, 1030, 1213
SfcI CTRYAG 2 cut(s) 247, 1035
SinI GGWCC 1 cut(s) 1024
SmiMI CAYNNNNRTG 2 cut(s) 329, 1221
SmlI CTYRAG 5 cut(s) 521, 545, 695, 873, 1148
SmoI CTYRAG 5 cut(s) 521, 545, 695, 873, 1148
Sse9I AATT 1 cut(s) 621
SsiI CCGC 8 cut(s) 187, 252, 265, 423, 426, 840, 979, 996
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 4 cut(s) 36, 173, 189, 1192
StyI CCWWGG 2 cut(s) 45, 256
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 144, 753, 1221
TasI AATT 1 cut(s) 621
TauI GCSGC 3 cut(s) 255, 426, 429
TfiI GAWTC 6 cut(s) 152, 221, 410, 507, 558, 1000
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 5 cut(s) 21, 304, 331, 349, 1015
TseI GCWGC 5 cut(s) 63, 93, 376, 834, 837
TspDTI ATGAA 6 cut(s) 347, 453, 612, 784, 812, 824
TspGWI ACGGA 3 cut(s) 107, 1037, 1079
TspRI CASTG 5 cut(s) 21, 304, 331, 349, 1015
VpaK11BI GGWCC 1 cut(s) 1024
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 791
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.