pycom05g21610

Caspase domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
24196106 .. 24197937
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21610.1

Sequence Viewer

Length: 840 bp
ATGGCGAGGAAGGCGGTGCTGATAGGATGCAACTACCCAGGAACAAAGGCGGAGCTCAAAGGCTGCATAAACGACGTCAAGCGAATGTACAGCTGCCTCGTCGACCGCTACGGCTTCTCCGAGGACGACATCCAAGTCCTGATCGACACCGACGACTCTTACACTCAGCCCACCGGAAAAAACATCCGCCGGGCCATCACCAACCTCATCCGATCCGCCGACTCCGGCGACGTCCTCTTTGTCCACTACAGCGGCCATGGGACCCGCCTTCCCGCCGAGACCGGCGATGATGATGATACGGGATACGATGAGTGCGTCGTCCCCACTGACATGAACCTCATCACTGATGATGACTTCAGGGGGTTTGTAGACCAGCTGCCAGCAGGTTGCAGGCTGACAATTGTATCAGATTCGTGCCACAGCGGTGGGCTCATTGATGAAGCGATAGAACAGATAGGAGAGAGCACCAAGGGGCAAGAGCGCGAGCACAAGTCCGGCTCCGGCAGTGGCAGTTTTGGTGGATTCAAGAACTTTCTCAAGGACAGGGCGGGAGATGCACTGGAGTCTCGTGGGATCCACATGCCATCTGCATTGCGCCGCGGTCGACATAATGAAGAAGAAGAAGAAGAGACGGAAGACAGAGAGATCGAAACTGAAGATGGGGACAGGGTCTATGTCAAAGGCAAGTCTCTACCACTCTCTACTCTCATAGAGATACTCAAGCAGAAAACAGGTAAGGACGACATTGATGTTGGGCAGCTGAGGCCAACACTTTTCGATGTTTTCGGAGAGGATGCCAGCCCTAAGGTGAAGAAGTTCATGAAGGTCGATCATAAATAA

Protein Analysis

280

Amino Acids

30.86

Weight (kDa)

4.86

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 3 - 162 5.8e-31 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AatII GACGTC 2 cut(s) 78, 234
Acc36I ACCTGC 1 cut(s) 374
AccI GTMKAC 3 cut(s) 102, 369, 604
AccII CGCG 2 cut(s) 483, 600
AclWI GGATC 3 cut(s) 207, 568, 581
AcoI YGGCCR 1 cut(s) 253
AcuI CTGAAG 2 cut(s) 340, 675
AcyI GRCGYC 2 cut(s) 75, 231
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 526
AjnI CCWGG 1 cut(s) 37
AleI CACNNNNGTG 1 cut(s) 423
AluBI AGCT 4 cut(s) 55, 93, 376, 760
AluI AGCT 4 cut(s) 55, 93, 376, 760
Alw21I GWGCWC 3 cut(s) 57, 467, 489
Alw26I GTCTC 4 cut(s) 272, 570, 623, 693
AlwI GGATC 3 cut(s) 207, 568, 581
AoxI GGCC 3 cut(s) 192, 253, 764
ApeKI GCWGC 4 cut(s) 63, 93, 376, 757
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
Asp700I GAANNNNTTC 1 cut(s) 815
AspLEI GCGC 2 cut(s) 483, 597
AspS9I GGNCC 2 cut(s) 192, 261
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 190, 820
AvaII GGWCC 1 cut(s) 261
AxyI CCTNAGG 1 cut(s) 804
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BamHI GGATCC 1 cut(s) 573
BanII GRGCYC 2 cut(s) 57, 432
BauI CACGAG 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 3 cut(s) 57, 467, 489
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 4 cut(s) 50, 80, 363, 769
BccI CCATC 3 cut(s) 203, 592, 653
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 296
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 4 cut(s) 272, 570, 623, 693
BfmI CTRYAG 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 374
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 6 cut(s) 64, 94, 253, 377, 598, 758
BlsI GCNGC 6 cut(s) 65, 95, 254, 378, 599, 759
Bme1390I CCNGG 2 cut(s) 39, 191
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 192, 261
BmiI GGNNCC 4 cut(s) 262, 263, 499, 575
BmrFI CCNGG 2 cut(s) 39, 191
BmsI GCATC 3 cut(s) 17, 544, 784
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 761
BpuEI CTTGAG 2 cut(s) 521, 704
BpuMI CCSGG 1 cut(s) 191
BsaHI GRCGYC 2 cut(s) 75, 231
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 5 cut(s) 37, 120, 256, 468, 598
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 564
Bse21I CCTNAGG 1 cut(s) 804
Bse3DI GCAATG 1 cut(s) 590
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 5 cut(s) 37, 120, 256, 468, 598
BseGI GGATG 5 cut(s) 32, 129, 183, 207, 799
BseMI GCAATG 1 cut(s) 590
BseMII CTCAG 2 cut(s) 179, 752
BseNI ACTGG 1 cut(s) 564
BseXI GCAGC 4 cut(s) 50, 80, 363, 769
Bsh1236I CGCG 2 cut(s) 483, 600
Bsh1285I CGRYCG 2 cut(s) 106, 604
BshFI GGCC 3 cut(s) 194, 255, 766
BsiEI CGRYCG 2 cut(s) 106, 604
BsiHKAI GWGCWC 3 cut(s) 57, 467, 489
BsiSI CCGG 6 cut(s) 174, 190, 225, 282, 495, 501
BslFI GGGAC 3 cut(s) 274, 305, 677
BsmAI GTCTC 4 cut(s) 272, 570, 623, 693
BsmBI CGTCTC 1 cut(s) 623
BsmFI GGGAC 3 cut(s) 274, 305, 677
BsnI GGCC 3 cut(s) 194, 255, 766
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 4 cut(s) 57, 432, 467, 489
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 5 cut(s) 141, 212, 573, 645, 829
Bsp19I CCATGG 1 cut(s) 256
BspANI GGCC 3 cut(s) 194, 255, 766
BspCNI CTCAG 2 cut(s) 178, 753
BspFNI CGCG 2 cut(s) 483, 600
BspHI TCATGA 1 cut(s) 819
BspLI GGNNCC 4 cut(s) 262, 263, 499, 575
BspMI ACCTGC 1 cut(s) 374
BspPI GGATC 3 cut(s) 207, 568, 581
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 590
BsrFI RCCGGY 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 1 cut(s) 564
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 5 cut(s) 37, 120, 256, 468, 598
BssMI GATC 5 cut(s) 141, 212, 573, 645, 829
BssNI GRCGYC 2 cut(s) 75, 231
BssSI CACGAG 1 cut(s) 567
BssT1I CCWWGG 2 cut(s) 256, 468
Bst2BI CACGAG 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 621
BstACI GRCGYC 2 cut(s) 75, 231
BstAUI TGTACA 1 cut(s) 87
BstC8I GCNNGC 4 cut(s) 381, 392, 485, 799
BstDEI CTNAG 3 cut(s) 165, 761, 804
BstDSI CCRYGG 2 cut(s) 256, 598
BstF5I GGATG 5 cut(s) 32, 129, 183, 207, 799
BstFNI CGCG 2 cut(s) 483, 600
BstHHI GCGC 2 cut(s) 483, 597
BstKTI GATC 5 cut(s) 144, 215, 576, 648, 832
BstMAI GTCTC 4 cut(s) 272, 570, 623, 693
BstMBI GATC 5 cut(s) 141, 212, 573, 645, 829
BstMCI CGRYCG 2 cut(s) 106, 604
BstMWI GCNNNNNNNGC 3 cut(s) 11, 554, 763
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 2 cut(s) 37, 189
BstSFI CTRYAG 1 cut(s) 247
BstUI CGCG 2 cut(s) 483, 600
BstV1I GCAGC 4 cut(s) 50, 80, 363, 769
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 1 cut(s) 573
BstXI CCANNNNNNTGG 1 cut(s) 425
BstYI RGATCY 1 cut(s) 573
Bsu36I CCTNAGG 1 cut(s) 804
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 3 cut(s) 194, 255, 766
BtgI CCRYGG 2 cut(s) 256, 598
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 5 cut(s) 32, 129, 183, 207, 799
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 4 cut(s) 324, 342, 511, 557
BveI ACCTGC 1 cut(s) 374
Cac8I GCNNGC 4 cut(s) 381, 392, 485, 799
CciI TCATGA 1 cut(s) 819
CfoI GCGC 2 cut(s) 483, 597
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 192, 261
Cfr42I CCGCGG 1 cut(s) 601
CseI GACGC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 88
CviAII CATG 4 cut(s) 257, 331, 580, 820
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 3 cut(s) 165, 761, 804
DpnI GATC 5 cut(s) 143, 214, 575, 647, 831
DpnII GATC 5 cut(s) 141, 212, 573, 645, 829
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
EciI GGCGGA 3 cut(s) 65, 176, 205
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 256, 468
Eco24I GRGCYC 2 cut(s) 57, 432
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 340, 675
Eco81I CCTNAGG 1 cut(s) 804
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 256, 468
EcoT38I GRGCYC 2 cut(s) 57, 432
ErhI CCWWGG 2 cut(s) 256, 468
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 4 cut(s) 260, 334, 583, 823
FaiI YATR 9 cut(s) 68, 258, 332, 581, 609, 675, 710, 821, 834
FaqI GGGAC 3 cut(s) 274, 305, 677
FatI CATG 4 cut(s) 256, 330, 579, 819
FauI CCCGC 3 cut(s) 272, 280, 541
FblI GTMKAC 3 cut(s) 102, 369, 604
Fnu4HI GCNGC 6 cut(s) 64, 94, 253, 377, 598, 758
FokI GGATG 5 cut(s) 39, 116, 170, 194, 806
FriOI GRGCYC 2 cut(s) 57, 432
Fsp4HI GCNGC 6 cut(s) 64, 94, 253, 377, 598, 758
GlaI GCGC 2 cut(s) 482, 596
GluI GCNGC 6 cut(s) 64, 94, 253, 377, 598, 758
GsuI CTGGAG 1 cut(s) 581
HaeIII GGCC 3 cut(s) 194, 255, 766
HapII CCGG 6 cut(s) 174, 190, 225, 282, 495, 501
HgaI GACGC 1 cut(s) 304
HhaI GCGC 2 cut(s) 483, 597
Hin1I GRCGYC 2 cut(s) 75, 231
Hin1II CATG 4 cut(s) 260, 334, 583, 823
Hin6I GCGC 2 cut(s) 481, 595
HinP1I GCGC 2 cut(s) 481, 595
HincII GTYRAC 2 cut(s) 103, 605
HindII GTYRAC 2 cut(s) 103, 605
HinfI GANTC 5 cut(s) 155, 221, 410, 522, 563
HpaII CCGG 6 cut(s) 174, 190, 225, 282, 495, 501
HphI GGTGA 2 cut(s) 190, 820
Hpy166II GTNNAC 4 cut(s) 103, 244, 370, 605
Hpy188I TCNGA 4 cut(s) 121, 212, 409, 788
Hpy188III TCNNGA 3 cut(s) 139, 526, 820
Hpy8I GTNNAC 4 cut(s) 103, 244, 370, 605
Hpy99I CGWCG 5 cut(s) 77, 104, 155, 233, 320
HpyAV CCTTC 3 cut(s) 4, 278, 817
HpyCH4IV ACGT 2 cut(s) 75, 231
HpyCH4V TGCA 5 cut(s) 30, 66, 390, 557, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 554, 763
HpyF3I CTNAG 3 cut(s) 165, 761, 804
HpySE526I ACGT 2 cut(s) 75, 231
Hsp92I GRCGYC 2 cut(s) 75, 231
Hsp92II CATG 4 cut(s) 260, 334, 583, 823
HspAI GCGC 2 cut(s) 481, 595
KflI GGGWCCC 1 cut(s) 261
KspI CCGCGG 1 cut(s) 601
Kzo9I GATC 5 cut(s) 141, 212, 573, 645, 829
LmnI GCTCC 2 cut(s) 52, 503
Lsp1109I GCAGC 4 cut(s) 50, 80, 363, 769
LweI GCATC 3 cut(s) 17, 544, 784
MaeII ACGT 2 cut(s) 75, 231
MalI GATC 5 cut(s) 143, 214, 575, 647, 831
MboI GATC 5 cut(s) 141, 212, 573, 645, 829
MboII GAAGA 8 cut(s) 626, 629, 632, 635, 638, 647, 668, 823
MfeI CAATTG 1 cut(s) 399
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 4 cut(s) 57, 432, 467, 489
MluCI AATT 1 cut(s) 399
MlyI GAGTC 3 cut(s) 149, 215, 572
MnlI CCTC 7 cut(s) 107, 115, 215, 245, 347, 756, 784
MroXI GAANNNNTTC 1 cut(s) 815
MslI CAYNNNNRTG 2 cut(s) 329, 423
MspA1I CMGCKG 6 cut(s) 93, 252, 376, 423, 600, 760
MspI CCGG 6 cut(s) 174, 190, 225, 282, 495, 501
MspR9I CCNGG 2 cut(s) 39, 191
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 2 cut(s) 483, 600
MwoI GCNNNNNNNGC 3 cut(s) 11, 554, 763
NciI CCSGG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 256
NdeII GATC 5 cut(s) 141, 212, 573, 645, 829
NlaIII CATG 4 cut(s) 260, 334, 583, 823
NlaIV GGNNCC 4 cut(s) 262, 263, 499, 575
NmeAIII GCCGAG 1 cut(s) 301
NspI RCATGY 1 cut(s) 583
OliI CACNNNNGTG 1 cut(s) 423
PagI TCATGA 1 cut(s) 819
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 150, 312
PdmI GAANNNNTTC 1 cut(s) 815
PfeI GAWTC 2 cut(s) 410, 522
PflFI GACNNNGTC 1 cut(s) 668
PkrI GCNGC 6 cut(s) 65, 95, 254, 378, 599, 759
PleI GAGTC 3 cut(s) 149, 215, 571
PpsI GAGTC 3 cut(s) 149, 215, 571
PpuMI RGGWCCY 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 4 cut(s) 262, 263, 499, 575
PspPI GGNCC 2 cut(s) 192, 261
PspPPI RGGWCCY 1 cut(s) 261
PsuI RGATCY 1 cut(s) 573
PsyI GACNNNGTC 1 cut(s) 668
PvuII CAGCTG 3 cut(s) 93, 376, 760
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 2 cut(s) 329, 423
SacI GAGCTC 1 cut(s) 57
SacII CCGCGG 1 cut(s) 601
SalI GTCGAC 2 cut(s) 101, 603
SatI GCNGC 6 cut(s) 64, 94, 253, 377, 598, 758
Sau3AI GATC 5 cut(s) 141, 212, 573, 645, 829
Sau96I GGNCC 2 cut(s) 192, 261
SchI GAGTC 3 cut(s) 149, 215, 572
ScrFI CCNGG 2 cut(s) 39, 191
SduI GDGCHC 4 cut(s) 57, 432, 467, 489
SfaNI GCATC 3 cut(s) 17, 544, 784
SfcI CTRYAG 1 cut(s) 247
Sfr303I CCGCGG 1 cut(s) 601
SgrBI CCGCGG 1 cut(s) 601
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 329, 423
SmlI CTYRAG 2 cut(s) 536, 719
SmoI CTYRAG 2 cut(s) 536, 719
Sse9I AATT 1 cut(s) 399
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 37, 189
StyI CCWWGG 2 cut(s) 256, 468
TaiI ACGT 2 cut(s) 78, 234
TaqI TCGA 6 cut(s) 102, 144, 604, 648, 777, 828
TasI AATT 1 cut(s) 399
TatI WGTACW 1 cut(s) 87
TauI GCSGC 2 cut(s) 255, 600
TfiI GAWTC 2 cut(s) 410, 522
TscAI CASTG 4 cut(s) 331, 349, 511, 564
TseI GCWGC 4 cut(s) 63, 93, 376, 757
TspDTI ATGAA 5 cut(s) 347, 453, 627, 808, 836
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 4 cut(s) 331, 349, 511, 564
Tth111I GACNNNGTC 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 261
XceI RCATGY 1 cut(s) 583
XmiI GTMKAC 3 cut(s) 102, 369, 604
XmnI GAANNNNTTC 1 cut(s) 815
ZraI GACGTC 2 cut(s) 76, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.