AT1G79340

Metacaspase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
29842587 .. 29844638
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79340.1

Sequence Viewer

Length: 1257 bp
ATGACGAAAAAGGCGGTGCTTATTGGGATCAATTACCCAGGAACCAAGGCGGAGTTACGGGGATGCGTCAACGATGTTCGTCGTATGTACAAATGTCTCGTTGAACGGTACGGCTTCTCCGAGGAGAACATCACCGTTCTCATCGACACCGATGAATCCTCTACTCAGCCTACTGGCAAGAACATCCGCCGCGCGCTTGCTGATCTCGTCGAATCTGCCGATTCCGGCGACGTTCTTGTCGTTCATTACAGTGGACACGGTACGAGGTTGCCGGCTGAGACTGGTGAAGACGATGACACTGGTTTCGACGAGTGTATTGTTCCTTGCGACATGAATCTGATTACTGATGATGATTTTAGAGATCTTGTGGACAAGGTTCCTCCAGGTTGCAGAATGACAATCATTTCAGACTCTTGTCACAGTGGTGGCCTAATCGACGAAGCCAAGGAGCAGATTGGAGAGAGCACTAAGAAAGAAGCCGAGGACGAAGATGAATCTGAAGAATCTTCTTCAAGATTCGGGTTTAGGAAGTTCTTGCGCAGCAAAGTGGAAGGCGCCATCGAGTCTCGAGGGTTTCACATTGGAGGGAACAAGAAGGATGAAGATGAGGCGGAAGAAATCGAGACTAAGGAGATTGAGCTTGAAGACGGAGAAACGATCCATGCCAAAGACAAATCTCTTCCTCTGCAGACCTTGATTGATATTCTCAAGCAGCAAACAGGGAATGATAATATCGAAGTTGGGAAAATCAGGCCAAGCCTTTTTGATGCGTTTGGTGATGATTCGAGCCCGAAAGTGAAGAAGTTTATGAAAGTGATCTTAGGTAAGCTTCAGGCTGGAAATGGAGAAGAAGGTGGATTAATGGGAATGCTTGGCAAATTGGCTTCAGGGTTTCTTGAGGGTAAACTAAACGATGAAGACTATGTGAAACCCGCTATGCAGACACACGTTGGGAGTAAAGAAGAGGTTTATGCTGGTGGATCAAGAGGTTCGGTTCCGCTTCCAGACAGCGGGATACTGATCAGCGGTTGCCAAACCGATCAGACCTCTGCTGATGCGACTCCAGCGGGGAAACCAACTGAGGCTTATGGAGCGATGAGCAATTCGATACAGACGATATTGGAGGAGACAGACGGTGAGATATCAAACAGAGAAATGGTTACAAGGGCTAGGAAGGCATTGAAGAAGCAAGGGTTTACTCAGCAGCCAGGTTTGTATTGCCATGATGGTTATGCCAACGCTCCTTTCATCTGTTGA

Protein Analysis

418

Amino Acids

45.48

Weight (kDa)

4.7

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 3 - 408 1.3e-45 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 554
AccII CGCG 2 cut(s) 192, 194
AclWI GGATC 3 cut(s) 35, 652, 988
AcuI CTGAAG 3 cut(s) 519, 815, 870
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 3 cut(s) 89, 110, 262
AfiI CCNNNNNNNGG 1 cut(s) 1010
AflIII ACRYGT 1 cut(s) 946
AgsI TTSAA 4 cut(s) 104, 513, 644, 1183
AjnI CCWGG 3 cut(s) 37, 382, 1207
AjuI GAANNNNNNNTTGG 1 cut(s) 1229
AleI CACNNNNGTG 1 cut(s) 423
AluBI AGCT 2 cut(s) 640, 829
AluI AGCT 2 cut(s) 640, 829
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 5 cut(s) 101, 272, 570, 617, 1121
AlwI GGATC 3 cut(s) 35, 652, 988
Ama87I CYCGRG 1 cut(s) 567
AoxI GGCC 2 cut(s) 427, 752
ApeKI GCWGC 3 cut(s) 540, 712, 1204
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AseI ATTAAT 1 cut(s) 860
AspLEI GCGC 4 cut(s) 194, 196, 540, 557
AsuHPI GGTGA 4 cut(s) 124, 296, 788, 1148
AvaI CYCGRG 1 cut(s) 567
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 1 cut(s) 791
BbsI GAAGAC 3 cut(s) 294, 651, 924
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 552, 724, 1216
BccI CCATC 2 cut(s) 566, 1220
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 3 cut(s) 39, 384, 1209
BciVI GTATCC 1 cut(s) 1008
BclI TGATCA 1 cut(s) 1020
BcoDI GTCTC 5 cut(s) 101, 272, 570, 617, 1121
BfaI CTAG 1 cut(s) 1170
BfmI CTRYAG 1 cut(s) 686
BfoI RGCGCY 1 cut(s) 558
BfuI GTATCC 1 cut(s) 1008
BglII AGATCT 1 cut(s) 361
BisI GCNGC 4 cut(s) 190, 541, 713, 1205
BlsI GCNGC 4 cut(s) 191, 542, 714, 1206
Bme1390I CCNGG 3 cut(s) 39, 384, 1209
BmeT110I CYCGRG 1 cut(s) 567
BmiI GGNNCC 4 cut(s) 43, 378, 556, 996
BmrFI CCNGG 3 cut(s) 39, 384, 1209
BmsI GCATC 3 cut(s) 53, 757, 1045
BoxI GACNNNNGTC 1 cut(s) 414
BpiI GAAGAC 3 cut(s) 294, 651, 924
BpmI CTGGAG 2 cut(s) 366, 1047
BpuEI CTTGAG 2 cut(s) 692, 917
BsaBI GATNNNNATC 1 cut(s) 1019
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 5 cut(s) 37, 45, 120, 444, 480
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 1010
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 3 cut(s) 178, 286, 304
Bse8I GATNNNNATC 1 cut(s) 1019
BseBI CCWGG 3 cut(s) 39, 384, 1209
BseDI CCNNGG 5 cut(s) 37, 45, 120, 444, 480
BseGI GGATG 3 cut(s) 68, 183, 604
BseJI GATNNNNATC 1 cut(s) 1019
BseLI CCNNNNNNNGG 1 cut(s) 1010
BseMII CTCAG 4 cut(s) 179, 267, 1071, 1214
BseNI ACTGG 3 cut(s) 178, 286, 304
BsePI GCGCGC 1 cut(s) 192
BseRI GAGGAG 2 cut(s) 137, 1139
BseXI GCAGC 3 cut(s) 552, 724, 1216
Bsh1236I CGCG 2 cut(s) 192, 194
BshFI GGCC 2 cut(s) 429, 754
BshNI GGYRCC 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 2 cut(s) 225, 272
BslI CCNNNNNNNGG 1 cut(s) 1010
BsmAI GTCTC 5 cut(s) 101, 272, 570, 617, 1121
BsmI GAATGC 1 cut(s) 873
BsnI GGCC 2 cut(s) 429, 754
BsoBI CYCGRG 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 467, 791
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 8 cut(s) 27, 202, 361, 657, 816, 980, 1020, 1039
BspANI GGCC 2 cut(s) 429, 754
BspCNI CTCAG 4 cut(s) 178, 268, 1072, 1213
BspFNI CGCG 2 cut(s) 192, 194
BspLI GGNNCC 4 cut(s) 43, 378, 556, 996
BspMAI CTGCAG 1 cut(s) 690
BspPI GGATC 3 cut(s) 35, 652, 988
BspT107I GGYRCC 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 3 cut(s) 178, 286, 304
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 5 cut(s) 37, 45, 120, 444, 480
BssHII GCGCGC 1 cut(s) 192
BssMI GATC 8 cut(s) 27, 202, 361, 657, 816, 980, 1020, 1039
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 2 cut(s) 45, 444
Bst2UI CCWGG 3 cut(s) 39, 384, 1209
Bst4CI ACNGT 6 cut(s) 108, 136, 251, 260, 422, 1136
Bst6I CTCTTC 2 cut(s) 684, 957
BstACI GRCGYC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 194, 198, 273
BstDEI CTNAG 7 cut(s) 165, 276, 468, 627, 820, 1080, 1200
BstF5I GGATG 3 cut(s) 68, 183, 604
BstFNI CGCG 2 cut(s) 192, 194
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 4 cut(s) 194, 196, 540, 557
BstKTI GATC 8 cut(s) 30, 205, 364, 660, 819, 983, 1023, 1042
BstMAI GTCTC 5 cut(s) 101, 272, 570, 617, 1121
BstMBI GATC 8 cut(s) 27, 202, 361, 657, 816, 980, 1020, 1039
BstMWI GCNNNNNNNGC 3 cut(s) 1064, 1091, 1175
BstNI CCWGG 3 cut(s) 39, 384, 1209
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 3 cut(s) 37, 382, 1207
BstSFI CTRYAG 1 cut(s) 686
BstUI CGCG 2 cut(s) 192, 194
BstV1I GCAGC 3 cut(s) 552, 724, 1216
BstV2I GAAGAC 3 cut(s) 294, 651, 924
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuI GTATCC 1 cut(s) 1008
BsuRI GGCC 2 cut(s) 429, 754
BtgZI GCGATG 1 cut(s) 1109
BtsCI GGATG 3 cut(s) 68, 183, 604
BtsIMutI CAGTG 3 cut(s) 256, 297, 427
Cac8I GCNNGC 3 cut(s) 194, 198, 273
CfoI GCGC 4 cut(s) 194, 196, 540, 557
Cfr10I RCCGGY 1 cut(s) 271
CseI GACGC 1 cut(s) 55
Csp6I GTAC 3 cut(s) 88, 109, 261
CviAII CATG 3 cut(s) 331, 662, 1223
CviQI GTAC 3 cut(s) 88, 109, 261
DdeI CTNAG 7 cut(s) 165, 276, 468, 627, 820, 1080, 1200
DinI GGCGCC 1 cut(s) 556
DpnI GATC 8 cut(s) 29, 204, 363, 659, 818, 982, 1022, 1041
DpnII GATC 8 cut(s) 27, 202, 361, 657, 816, 980, 1020, 1039
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 2 cut(s) 684, 957
EarI CTCTTC 2 cut(s) 684, 957
EciI GGCGGA 3 cut(s) 65, 176, 626
Eco130I CCWWGG 2 cut(s) 45, 444
Eco24I GRGCYC 1 cut(s) 791
Eco32I GATATC 1 cut(s) 1143
Eco57I CTGAAG 3 cut(s) 519, 815, 870
Eco88I CYCGRG 1 cut(s) 567
EcoRII CCWGG 3 cut(s) 37, 382, 1207
EcoRV GATATC 1 cut(s) 1143
EcoT14I CCWWGG 2 cut(s) 45, 444
EcoT38I GRGCYC 1 cut(s) 791
EgeI GGCGCC 1 cut(s) 556
EheI GGCGCC 1 cut(s) 556
ErhI CCWWGG 2 cut(s) 45, 444
FaeI CATG 3 cut(s) 334, 665, 1226
FatI CATG 3 cut(s) 330, 661, 1222
FauI CCCGC 3 cut(s) 940, 1004, 1060
FbaI TGATCA 1 cut(s) 1020
Fnu4HI GCNGC 4 cut(s) 190, 541, 713, 1205
FokI GGATG 3 cut(s) 75, 170, 611
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 4 cut(s) 190, 541, 713, 1205
FspBI CTAG 1 cut(s) 1170
FspI TGCGCA 1 cut(s) 539
GlaI GCGC 4 cut(s) 193, 195, 539, 556
GluI GCNGC 4 cut(s) 190, 541, 713, 1205
GsuI CTGGAG 2 cut(s) 366, 1047
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 2 cut(s) 429, 754
HapII CCGG 2 cut(s) 225, 272
HgaI GACGC 1 cut(s) 55
HhaI GCGC 4 cut(s) 194, 196, 540, 557
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 3 cut(s) 334, 665, 1226
Hin6I GCGC 4 cut(s) 192, 194, 538, 555
HinP1I GCGC 4 cut(s) 192, 194, 538, 555
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 827
HpaII CCGG 2 cut(s) 225, 272
HphI GGTGA 4 cut(s) 124, 296, 788, 1148
Hpy166II GTNNAC 5 cut(s) 70, 254, 370, 905, 1197
Hpy188I TCNGA 5 cut(s) 121, 339, 409, 499, 1044
Hpy188III TCNNGA 6 cut(s) 513, 567, 622, 896, 984, 1004
Hpy8I GTNNAC 5 cut(s) 70, 254, 370, 905, 1197
Hpy99I CGWCG 5 cut(s) 84, 212, 233, 311, 440
HpyAV CCTTC 4 cut(s) 545, 589, 845, 1168
HpyCH4III ACNGT 6 cut(s) 108, 136, 251, 260, 422, 1136
HpyCH4IV ACGT 2 cut(s) 231, 948
HpyCH4V TGCA 3 cut(s) 390, 688, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 1064, 1091, 1175
HpyF3I CTNAG 7 cut(s) 165, 276, 468, 627, 820, 1080, 1200
HpySE526I ACGT 2 cut(s) 231, 948
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 3 cut(s) 334, 665, 1226
HspAI GCGC 4 cut(s) 192, 194, 538, 555
KasI GGCGCC 1 cut(s) 554
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 1020
Kzo9I GATC 8 cut(s) 27, 202, 361, 657, 816, 980, 1020, 1039
LmnI GCTCC 3 cut(s) 448, 1091, 1246
Lsp1109I GCAGC 3 cut(s) 552, 724, 1216
LweI GCATC 3 cut(s) 53, 757, 1045
MaeI CTAG 1 cut(s) 1170
MaeII ACGT 2 cut(s) 231, 948
MaeIII GTNAC 3 cut(s) 54, 416, 1159
MalI GATC 8 cut(s) 29, 204, 363, 659, 818, 982, 1022, 1041
MboI GATC 8 cut(s) 27, 202, 361, 657, 816, 980, 1020, 1039
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 467, 791
MluCI AATT 3 cut(s) 31, 878, 1102
Mly113I GGCGCC 1 cut(s) 555
MlyI GAGTC 3 cut(s) 404, 572, 1054
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 1 cut(s) 860
MslI CAYNNNNRTG 2 cut(s) 249, 423
MspA1I CMGCKG 3 cut(s) 1011, 1026, 1067
MspI CCGG 2 cut(s) 225, 272
MspR9I CCNGG 3 cut(s) 39, 384, 1209
Mva1269I GAATGC 1 cut(s) 873
MvaI CCWGG 3 cut(s) 39, 384, 1209
MvnI CGCG 2 cut(s) 192, 194
MwoI GCNNNNNNNGC 3 cut(s) 1064, 1091, 1175
NaeI GCCGGC 1 cut(s) 273
NarI GGCGCC 1 cut(s) 555
NdeII GATC 8 cut(s) 27, 202, 361, 657, 816, 980, 1020, 1039
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 334, 665, 1226
NlaIV GGNNCC 4 cut(s) 43, 378, 556, 996
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 416
NsbI TGCGCA 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 423
PaeR7I CTCGAG 1 cut(s) 567
PauI GCGCGC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 4 cut(s) 117, 216, 237, 1112
PctI GAATGC 1 cut(s) 873
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 8 cut(s) 155, 212, 221, 334, 494, 503, 516, 782
PkrI GCNGC 4 cut(s) 191, 542, 714, 1206
PleI GAGTC 3 cut(s) 404, 571, 1054
PluTI GGCGCC 1 cut(s) 558
PpsI GAGTC 3 cut(s) 404, 571, 1054
PshAI GACNNNNGTC 1 cut(s) 414
PshBI ATTAAT 1 cut(s) 860
Psp6I CCWGG 3 cut(s) 37, 382, 1207
PspGI CCWGG 3 cut(s) 37, 382, 1207
PspN4I GGNNCC 4 cut(s) 43, 378, 556, 996
PstI CTGCAG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 361
PteI GCGCGC 1 cut(s) 192
RsaI GTAC 3 cut(s) 89, 110, 262
RsaNI GTAC 3 cut(s) 88, 109, 261
RseI CAYNNNNRTG 2 cut(s) 249, 423
SaqAI TTAA 1 cut(s) 860
SatI GCNGC 4 cut(s) 190, 541, 713, 1205
Sau3AI GATC 8 cut(s) 27, 202, 361, 657, 816, 980, 1020, 1039
SchI GAGTC 3 cut(s) 404, 572, 1054
ScrFI CCNGG 3 cut(s) 39, 384, 1209
SduI GDGCHC 2 cut(s) 467, 791
SfaNI GCATC 3 cut(s) 53, 757, 1045
SfcI CTRYAG 1 cut(s) 686
SfoI GGCGCC 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 567
SlaI CTCGAG 1 cut(s) 567
SmiMI CAYNNNNRTG 2 cut(s) 249, 423
SmlI CTYRAG 3 cut(s) 567, 707, 896
SmoI CTYRAG 3 cut(s) 567, 707, 896
Sse9I AATT 3 cut(s) 31, 878, 1102
SspDI GGCGCC 1 cut(s) 554
SspMI CTAG 1 cut(s) 1170
StyD4I CCNGG 3 cut(s) 37, 382, 1207
StyI CCWWGG 2 cut(s) 45, 444
TaaI ACNGT 6 cut(s) 108, 136, 251, 260, 422, 1136
TaiI ACGT 2 cut(s) 234, 951
TasI AATT 3 cut(s) 31, 878, 1102
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 8 cut(s) 155, 212, 221, 334, 494, 503, 516, 782
Tru1I TTAA 1 cut(s) 860
Tru9I TTAA 1 cut(s) 860
TscAI CASTG 3 cut(s) 256, 304, 427
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 3 cut(s) 540, 712, 1204
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 8 cut(s) 168, 233, 347, 507, 615, 824, 930, 1237
TspGWI ACGGA 1 cut(s) 663
TspRI CASTG 3 cut(s) 256, 304, 427
VspI ATTAAT 1 cut(s) 860
XhoI CTCGAG 1 cut(s) 567
XspI CTAG 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.