AT1G79330

Metacaspase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
29838551 .. 29840317
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79330.1

Sequence Viewer

Length: 1233 bp
ATGGCGAAGAAAGCTGTGTTGATTGGAATCAATTACCCTGGAACCAAGGCGGAGCTACGGGGATGCGTCAACGATGTCCGGAGAGTGCACAAATCTCTCGTGGATCGGTTTGGATTCTCCGAGAGAAACATCACTGAGCTGATTGATACTGACGAGTCTTCCACCAAACCTACAGGGAAGAATATTCGAAGGGCATTGTTGAATCTAGTTGAATCCGCTAAACCGGGTGATGTTCTTGTCGTCCATTACAGTGGACACGGGACGAGGTTGCCGGCGGAGACTGGAGAAGACGATGATACTGGTTATGATGAGTGTATTGTTCCTTGTGATATGAATCTTATCACCGATGATGAGTTTAGAGATCTTGTGGAGAAAGTACCAAAGGAAGCACACATTACAATCATCTCAGACTCTTGTCACAGTGGTGGTCTCATCGATGAAGCTAAAGAGCAGATCGGAGAGAGCACGAAGAAGAAGCCAAAGAAAGAATCTGGAGGCTCTTCAGGACTTGGAATCAAAGGCTTTGTGCGTGAAGCTGTGGAAGAAGCACTGGAATCTAAAGGGATCGCCATTCCTCACCACAAAGATGAGAAAGACGAAAACAAGACTAAAGAGCTTAAACTAGAAGATGGGGCAAAAGTCCATGTCGTGAACAAATCTCTGCCTCTACAAACTCTAATCGATATCCTCAAGCAAAATACAGGTAACAATGATATCGAAGTTGGGAAAATCAGACCAACCCTTTTCAATGTGTTTGGAGAAGATGCATCCCCAAAGGTTAAGAAGTTCATGAAAGTGATTCTAACAAAGCTGCAAGAAGGTAAAACTGAAGGTGGGATATTGGGAATGATTGGGAAACTAGCTCAAGAGTTTCTTAAGCATAAACTAAACGATGACGAAGAGTATGTGAAACCCGCGATGAAGACACATGTTGGGAACAAGCAAGAGGTCTATGCAGGCGCGAGCAATGGTTCTCTTGCGGATAACGGTATTTTGATTAGTGGTTGCCAAACAGATCAAACTTCTGCAGACGCGAGTCCTCAAGGTCATCCTGAAATGGCTTATGGAGCATTCACCAATGCTGTGCAGATCATACTTGAGGAGACAAAGGGTATGATTACATACAAAGAACTTGTTTTGAAGGCAAGGAAGCTTCTTAAGAAACAAGGCTTTTCTCAACGACCAGGACTATATTGCAGTGATAGTTTTGTGAATGCTCCGTTTATTTGTTAA

Protein Analysis

410

Amino Acids

44.85

Weight (kDa)

6.17

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 3 - 400 4.3e-43 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 917, 962, 1034
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 5 cut(s) 50, 216, 275, 915, 980
AclWI GGATC 2 cut(s) 111, 572
AcuI CTGAAG 2 cut(s) 486, 849
AfaI GTAC 1 cut(s) 378
AflII CTTAAG 2 cut(s) 875, 1157
AflIII ACRYGT 1 cut(s) 928
AgsI TTSAA 4 cut(s) 202, 212, 748, 1141
AjnI CCWGG 2 cut(s) 37, 1183
AleI CACNNNNGTG 1 cut(s) 423
AluBI AGCT 9 cut(s) 14, 55, 139, 443, 536, 616, 811, 863, 1153
AluI AGCT 9 cut(s) 14, 55, 139, 443, 536, 616, 811, 863, 1153
Alw21I GWGCWC 2 cut(s) 90, 467
Alw26I GTCTC 3 cut(s) 272, 434, 1097
Alw44I GTGCAC 1 cut(s) 86
AlwI GGATC 2 cut(s) 111, 572
Aor13HI TCCGGA 1 cut(s) 78
ApaLI GTGCAC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 962
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 4 cut(s) 239, 334, 569, 1066
AsuII TTCGAA 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 90
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 3 cut(s) 150, 294, 929
Bbv12I GWGCWC 2 cut(s) 90, 467
BbvI GCAGC 1 cut(s) 798
BccI CCATC 1 cut(s) 623
BciT130I CCWGG 2 cut(s) 39, 1185
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 3 cut(s) 272, 434, 1097
BfaI CTAG 3 cut(s) 206, 623, 860
BfmI CTRYAG 2 cut(s) 171, 1026
BfrI CTTAAG 2 cut(s) 875, 1157
BglII AGATCT 1 cut(s) 361
BisI GCNGC 1 cut(s) 812
BlsI GCNGC 1 cut(s) 813
Bme1390I CCNGG 3 cut(s) 39, 225, 1185
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 3 cut(s) 39, 225, 1185
BmsI GCATC 3 cut(s) 53, 754, 776
BoxI GACNNNNGTC 2 cut(s) 414, 1035
BpiI GAAGAC 3 cut(s) 150, 294, 929
BpmI CTGGAG 2 cut(s) 303, 513
Bpu14I TTCGAA 1 cut(s) 187
BpuEI CTTGAG 4 cut(s) 674, 849, 1026, 1118
BpuMI CCSGG 1 cut(s) 225
Bsa29I ATCGAT 2 cut(s) 435, 681
BsaBI GATNNNNATC 2 cut(s) 26, 333
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 37, 45
BsaWI WCCGGW 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 3 cut(s) 286, 304, 555
Bse3DI GCAATG 1 cut(s) 973
Bse8I GATNNNNATC 2 cut(s) 26, 333
BseAI TCCGGA 1 cut(s) 78
BseBI CCWGG 2 cut(s) 39, 1185
BseCI ATCGAT 2 cut(s) 435, 681
BseDI CCNNGG 2 cut(s) 37, 45
BseGI GGATG 3 cut(s) 68, 767, 1048
BseJI GATNNNNATC 2 cut(s) 26, 333
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 2 cut(s) 126, 420
BseNI ACTGG 3 cut(s) 286, 304, 555
BseRI GAGGAG 1 cut(s) 1115
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 1 cut(s) 798
BsgI GTGCAG 1 cut(s) 1106
Bsh1236I CGCG 3 cut(s) 917, 962, 1034
BshVI ATCGAT 2 cut(s) 435, 681
BsiHKAI GWGCWC 2 cut(s) 90, 467
BsiSI CCGG 3 cut(s) 79, 224, 272
BslFI GGGAC 1 cut(s) 274
BsmAI GTCTC 3 cut(s) 272, 434, 1097
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 2 cut(s) 1070, 1219
Bso31I GGTCTC 1 cut(s) 434
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 90, 467
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 6 cut(s) 103, 361, 453, 564, 1015, 1089
BspACI CCGC 5 cut(s) 50, 216, 275, 915, 980
BspCNI CTCAG 2 cut(s) 127, 419
BspDI ATCGAT 2 cut(s) 435, 681
BspEI TCCGGA 1 cut(s) 78
BspFNI CGCG 3 cut(s) 917, 962, 1034
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 1030
BspPI GGATC 2 cut(s) 111, 572
BspQI GCTCTTC 1 cut(s) 505
BspT104I TTCGAA 1 cut(s) 187
BspTI CTTAAG 2 cut(s) 875, 1157
BspTNI GGTCTC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 973
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 3 cut(s) 286, 304, 555
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 37, 45
BssMI GATC 6 cut(s) 103, 361, 453, 564, 1015, 1089
BssSI CACGAG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 39, 1185
Bst4CI ACNGT 3 cut(s) 251, 422, 989
Bst6I CTCTTC 2 cut(s) 505, 894
BstAFI CTTAAG 2 cut(s) 875, 1157
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 3 cut(s) 273, 958, 964
BstDEI CTNAG 2 cut(s) 135, 406
BstF5I GGATG 3 cut(s) 68, 767, 1048
BstFNI CGCG 3 cut(s) 917, 962, 1034
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 6 cut(s) 106, 364, 456, 567, 1018, 1092
BstMAI GTCTC 3 cut(s) 272, 434, 1097
BstMBI GATC 6 cut(s) 103, 361, 453, 564, 1015, 1089
BstMWI GCNNNNNNNGC 2 cut(s) 11, 1067
BstNI CCWGG 2 cut(s) 39, 1185
BstNSI RCATGY 1 cut(s) 932
BstPAI GACNNNNGTC 2 cut(s) 414, 1035
BstSCI CCNGG 3 cut(s) 37, 223, 1183
BstSFI CTRYAG 2 cut(s) 171, 1026
BstSLI GKGCMC 1 cut(s) 90
BstUI CGCG 3 cut(s) 917, 962, 1034
BstV1I GCAGC 1 cut(s) 798
BstV2I GAAGAC 3 cut(s) 150, 294, 929
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 361
Bsu15I ATCGAT 2 cut(s) 435, 681
BsuTUI ATCGAT 2 cut(s) 435, 681
BtgZI GCGATG 1 cut(s) 932
BtsCI GGATG 3 cut(s) 68, 767, 1048
BtsI GCAGTG 1 cut(s) 1204
BtsIMutI CAGTG 5 cut(s) 132, 256, 427, 548, 1204
Cac8I GCNNGC 3 cut(s) 273, 958, 964
CciI TCATGA 1 cut(s) 789
CfoI GCGC 1 cut(s) 962
Cfr10I RCCGGY 1 cut(s) 271
ClaI ATCGAT 2 cut(s) 435, 681
CseI GACGC 2 cut(s) 55, 1040
Csp6I GTAC 1 cut(s) 377
CviAII CATG 3 cut(s) 644, 790, 929
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 2 cut(s) 135, 406
DpnI GATC 6 cut(s) 105, 363, 455, 566, 1017, 1091
DpnII GATC 6 cut(s) 103, 361, 453, 564, 1015, 1089
Eam1104I CTCTTC 2 cut(s) 505, 894
EarI CTCTTC 2 cut(s) 505, 894
EciI GGCGGA 2 cut(s) 65, 290
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 434
Eco32I GATATC 2 cut(s) 685, 715
Eco57I CTGAAG 2 cut(s) 486, 849
EcoRII CCWGG 2 cut(s) 37, 1183
EcoRV GATATC 2 cut(s) 685, 715
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 769
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 3 cut(s) 647, 793, 932
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 1 cut(s) 274
FatI CATG 3 cut(s) 643, 789, 928
FauI CCCGC 1 cut(s) 922
Fnu4HI GCNGC 1 cut(s) 812
FokI GGATG 3 cut(s) 75, 754, 1035
Fsp4HI GCNGC 1 cut(s) 812
FspBI CTAG 3 cut(s) 206, 623, 860
GlaI GCGC 1 cut(s) 961
GluI GCNGC 1 cut(s) 812
GsuI CTGGAG 2 cut(s) 303, 513
HapII CCGG 3 cut(s) 79, 224, 272
HgaI GACGC 2 cut(s) 55, 1040
HhaI GCGC 1 cut(s) 962
Hin1II CATG 3 cut(s) 647, 793, 932
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 1151
HpaII CCGG 3 cut(s) 79, 224, 272
HphI GGTGA 4 cut(s) 239, 334, 569, 1066
Hpy166II GTNNAC 4 cut(s) 70, 88, 254, 652
Hpy188I TCNGA 4 cut(s) 121, 409, 458, 734
Hpy188III TCNNGA 7 cut(s) 79, 492, 504, 649, 790, 866, 1052
Hpy8I GTNNAC 4 cut(s) 70, 88, 254, 652
HpyAV CCTTC 4 cut(s) 183, 812, 824, 1135
HpyCH4III ACNGT 3 cut(s) 251, 422, 989
HpyCH4V TGCA 7 cut(s) 88, 767, 814, 956, 1028, 1087, 1197
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 1067
HpyF3I CTNAG 2 cut(s) 135, 406
Hsp92II CATG 3 cut(s) 647, 793, 932
HspAI GCGC 1 cut(s) 960
Kpn2I TCCGGA 1 cut(s) 78
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Kzo9I GATC 6 cut(s) 103, 361, 453, 564, 1015, 1089
LguI GCTCTTC 1 cut(s) 505
LmnI GCTCC 3 cut(s) 52, 1067, 1222
Lsp1109I GCAGC 1 cut(s) 798
LweI GCATC 3 cut(s) 53, 754, 776
MaeI CTAG 3 cut(s) 206, 623, 860
MaeIII GTNAC 2 cut(s) 416, 704
MalI GATC 6 cut(s) 105, 363, 455, 566, 1017, 1091
MboI GATC 6 cut(s) 103, 361, 453, 564, 1015, 1089
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 90, 467
MluCI AATT 1 cut(s) 31
MlyI GAGTC 3 cut(s) 164, 404, 1045
MnlI CCTC 8 cut(s) 258, 488, 585, 675, 698, 940, 1050, 1093
Mph1103I ATGCAT 1 cut(s) 769
MroI TCCGGA 1 cut(s) 78
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 5 cut(s) 618, 780, 876, 1158, 1231
MslI CAYNNNNRTG 4 cut(s) 249, 423, 585, 794
MspCI CTTAAG 2 cut(s) 875, 1157
MspI CCGG 3 cut(s) 79, 224, 272
MspR9I CCNGG 3 cut(s) 39, 225, 1185
Mva1269I GAATGC 2 cut(s) 1070, 1219
MvaI CCWGG 2 cut(s) 39, 1185
MvnI CGCG 3 cut(s) 917, 962, 1034
MwoI GCNNNNNNNGC 2 cut(s) 11, 1067
NaeI GCCGGC 1 cut(s) 273
NciI CCSGG 1 cut(s) 225
NdeII GATC 6 cut(s) 103, 361, 453, 564, 1015, 1089
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 647, 793, 932
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 1 cut(s) 769
NspI RCATGY 1 cut(s) 932
NspV TTCGAA 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 423
PagI TCATGA 1 cut(s) 789
PciI ACATGT 1 cut(s) 928
PciSI GCTCTTC 1 cut(s) 505
PctI GAATGC 2 cut(s) 1070, 1219
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 9 cut(s) 27, 114, 202, 212, 334, 488, 513, 554, 799
PkrI GCNGC 1 cut(s) 813
PleI GAGTC 3 cut(s) 163, 404, 1044
PpsI GAGTC 3 cut(s) 163, 404, 1044
PscI ACATGT 1 cut(s) 928
PshAI GACNNNNGTC 2 cut(s) 414, 1035
Psp6I CCWGG 2 cut(s) 37, 1183
PspGI CCWGG 2 cut(s) 37, 1183
PspN4I GGNNCC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 1030
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 4 cut(s) 249, 423, 585, 794
SapI GCTCTTC 1 cut(s) 505
SaqAI TTAA 5 cut(s) 618, 780, 876, 1158, 1231
SatI GCNGC 1 cut(s) 812
Sau3AI GATC 6 cut(s) 103, 361, 453, 564, 1015, 1089
SchI GAGTC 3 cut(s) 164, 404, 1045
ScrFI CCNGG 3 cut(s) 39, 225, 1185
SduI GDGCHC 2 cut(s) 90, 467
SfaNI GCATC 3 cut(s) 53, 754, 776
SfcI CTRYAG 2 cut(s) 171, 1026
SfuI TTCGAA 1 cut(s) 187
SmiMI CAYNNNNRTG 4 cut(s) 249, 423, 585, 794
SmlI CTYRAG 6 cut(s) 689, 864, 875, 1041, 1097, 1157
SmoI CTYRAG 6 cut(s) 689, 864, 875, 1041, 1097, 1157
Sse9I AATT 1 cut(s) 31
SsiI CCGC 5 cut(s) 50, 216, 275, 915, 980
SspI AATATT 1 cut(s) 184
SspMI CTAG 3 cut(s) 206, 623, 860
StyD4I CCNGG 3 cut(s) 37, 223, 1183
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 251, 422, 989
TaqI TCGA 4 cut(s) 187, 435, 681, 717
TasI AATT 1 cut(s) 31
TfiI GAWTC 9 cut(s) 27, 114, 202, 212, 334, 488, 513, 554, 799
Tru1I TTAA 5 cut(s) 618, 780, 876, 1158, 1231
Tru9I TTAA 5 cut(s) 618, 780, 876, 1158, 1231
TscAI CASTG 5 cut(s) 139, 256, 427, 555, 1204
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 811
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 5 cut(s) 347, 453, 778, 806, 935
TspGWI ACGGA 1 cut(s) 1209
TspRI CASTG 5 cut(s) 139, 256, 427, 555, 1204
Vha464I CTTAAG 2 cut(s) 875, 1157
VneI GTGCAC 1 cut(s) 86
XceI RCATGY 1 cut(s) 932
XspI CTAG 3 cut(s) 206, 623, 860
Zsp2I ATGCAT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.