Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Reverse (-)

29877228 .. 29879279

Gene Structure 2052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAGAGTTATGGGTGTGAAGGGTCTTACTCTTTACCACCTAAAGAGCCATCTTCAGAAATTCAGGCTTGGAAAGCAGCCGCACAAGGAGTACGGAGATCACTCCACAAAGGAAGGTTCAAGAGCTTCTGCCATGGATATTCAGCGCAACGTAGCTTCTTCTTCTGGCATGATGAGTCGCAACATGAATGAGATGCAAATGGAAGTGCAGAGAAGGTTGCATGAACAGCTAGAGGTGCAAAGACATCTGCAACTGAGGATTGAAGCACAAGGAAAGTACATGCAATCTATCTTGGAGAGAGCTTGCCAAACCCTAGCCGGTGAGAACATGGCAGCCGCCACCGCAGCAGCCGCCGTCGGAGGAGGATACAAGGGTAATCTGGGAAGTTCGAGTCTTTCAGCAGCGGTGGGCCCACCTCCTCATCCTCTTAGTTTCCCGCCGTTTCAAGACCTAAACATCTATGGAAACACAACCGACCAAGTCCTCGACCATCACAACTTCCATCATCAAAACATAGAGAACCATTTCACGGGTAACAATGCTGCAGACACCAACATTTACTTGGGGAAGAAGCGACCTAATCCTAATTTTGGTAACGATGTAAGGAAAGGACTATTGATGTGGTCTGATCAAGATCACGATCTTTCCGCAAACCAATCGATCGATGATGAGCATAGAATTCAGATACAGATGGCTACACATGTCTCCACGGATTTGGATTCTTTGTCGGAGATCTACGAAAGGAAATCAGGTTTATCAGGTGATGAAGGGAATAATGGTGGGAAATTACTGGAAAGGCCATCGCCTAGGAGATCACCATTGAGTCCTATGATGAACCCTAATGGTGGATTAATACAAGGAAGAAACTCGCCATTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

293

Amino Acids

32.43

Weight (kDa)

7.96

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	65 - 104	2e-21	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	80, 336, 342, 351, 404, 437, 648
AcsI	RAATTY	2 cut(s)	59, 678
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	92, 278
AfiI	CCNNNNNNNGG	3 cut(s)	529, 590, 845
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	3 cut(s)	120, 263, 446
AluBI	AGCT	4 cut(s)	125, 155, 229, 302
AluI	AGCT	4 cut(s)	125, 155, 229, 302
Alw26I	GTCTC	1 cut(s)	709
AoxI	GGCC	2 cut(s)	409, 797
ApaI	GGGCCC	1 cut(s)	413
ApeKI	GCWGC	6 cut(s)	76, 332, 344, 347, 401, 542
ApoI	RAATTY	2 cut(s)	59, 678
AseI	ATTAAT	1 cut(s)	851
Asp700I	GAANNNNTTC	1 cut(s)	524
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	409, 410
AsuHPI	GGTGA	3 cut(s)	332, 773, 807
AvrII	CCTAGG	1 cut(s)	806
BaeGI	GKGCMC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	358, 391
BanII	GRGCYC	1 cut(s)	413
BbvI	GCAGC	6 cut(s)	88, 344, 356, 359, 413, 529
BccI	CCATC	5 cut(s)	57, 498, 510, 685, 808
BceAI	ACGGC	2 cut(s)	338, 424
BcgI	CGANNNNNNTGC	2 cut(s)	639, 673
BciVI	GTATCC	1 cut(s)	359
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	709
BfaI	CTAG	3 cut(s)	230, 314, 807
BfmI	CTRYAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	359
BglII	AGATCT	1 cut(s)	732
BisI	GCNGC	9 cut(s)	77, 80, 333, 336, 345, 348, 351, 402, 543
BlnI	CCTAGG	1 cut(s)	806
BlsI	GCNGC	9 cut(s)	78, 81, 334, 337, 346, 349, 352, 403, 544
BmgT120I	GGNCC	2 cut(s)	409, 410
BmiI	GGNNCC	1 cut(s)	411
BmsI	GCATC	1 cut(s)	183
Bsa29I	ATCGAT	2 cut(s)	659, 663
BsaBI	GATNNNNATC	2 cut(s)	633, 639
BsaJI	CCNNGG	3 cut(s)	132, 708, 806
Bsc4I	CCNNNNNNNGG	3 cut(s)	529, 590, 845
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	795
Bse8I	GATNNNNATC	2 cut(s)	633, 639
BseCI	ATCGAT	2 cut(s)	659, 663
BseDI	CCNNGG	3 cut(s)	132, 708, 806
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	2 cut(s)	633, 639
BseLI	CCNNNNNNNGG	3 cut(s)	529, 590, 845
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	795
BseRI	GAGGAG	2 cut(s)	375, 408
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	6 cut(s)	88, 344, 356, 359, 413, 529
BsgI	GTGCAG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	2 cut(s)	411, 799
BshVI	ATCGAT	2 cut(s)	659, 663
BsiEI	CGRYCG	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	3 cut(s)	529, 590, 845
BsmAI	GTCTC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	411, 799
Bsp120I	GGGCCC	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	7 cut(s)	97, 628, 634, 640, 660, 732, 812
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	7 cut(s)	80, 336, 342, 351, 404, 437, 648
BspANI	GGCC	2 cut(s)	411, 799
BspCNI	CTCAG	1 cut(s)	246
BspDI	ATCGAT	2 cut(s)	659, 663
BspLI	GGNNCC	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	795
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	3 cut(s)	132, 708, 806
BssMI	GATC	7 cut(s)	97, 628, 634, 640, 660, 732, 812
BssT1I	CCWWGG	2 cut(s)	132, 806
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	254, 428
BstDSI	CCRYGG	2 cut(s)	132, 708
BstF5I	GGATG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	7 cut(s)	100, 631, 637, 643, 663, 735, 815
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	7 cut(s)	97, 628, 634, 640, 660, 732, 812
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	6 cut(s)	73, 226, 235, 341, 344, 350
BstNSI	RCATGY	2 cut(s)	283, 704
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	6 cut(s)	88, 344, 356, 359, 413, 529
BstX2I	RGATCY	1 cut(s)	732
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	732
Bsu15I	ATCGAT	2 cut(s)	659, 663
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	411, 799
BsuTUI	ATCGAT	2 cut(s)	659, 663
BtgI	CCRYGG	2 cut(s)	132, 708
BtgZI	GCGATG	1 cut(s)	786
BtsCI	GGATG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	409, 410
ClaI	ATCGAT	2 cut(s)	659, 663
Csp6I	GTAC	2 cut(s)	91, 277
CviAII	CATG	7 cut(s)	133, 169, 184, 221, 280, 328, 701
CviQI	GTAC	2 cut(s)	91, 277
DdeI	CTNAG	2 cut(s)	254, 428
DpnI	GATC	7 cut(s)	99, 630, 636, 642, 662, 734, 814
DpnII	GATC	7 cut(s)	97, 628, 634, 640, 660, 732, 812
Eco130I	CCWWGG	2 cut(s)	132, 806
Eco24I	GRGCYC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	678
EcoT14I	CCWWGG	2 cut(s)	132, 806
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	2 cut(s)	132, 806
FaeI	CATG	7 cut(s)	136, 172, 187, 224, 283, 331, 704
FatI	CATG	7 cut(s)	132, 168, 183, 220, 279, 327, 700
FauI	CCCGC	1 cut(s)	444
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	9 cut(s)	77, 80, 333, 336, 345, 348, 351, 402, 543
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	9 cut(s)	77, 80, 333, 336, 345, 348, 351, 402, 543
FspBI	CTAG	3 cut(s)	230, 314, 807
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	9 cut(s)	77, 80, 333, 336, 345, 348, 351, 402, 543
HaeIII	GGCC	2 cut(s)	411, 799
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	7 cut(s)	136, 172, 187, 224, 283, 331, 704
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	4 cut(s)	175, 391, 719, 823
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	332, 773, 807
Hpy188I	TCNGA	5 cut(s)	57, 359, 628, 684, 730
Hpy188III	TCNNGA	4 cut(s)	120, 446, 632, 638
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	4 cut(s)	13, 107, 207, 761
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	7 cut(s)	196, 208, 220, 238, 250, 283, 545
HpyF10VI	GCNNNNNNNGC	6 cut(s)	73, 226, 235, 341, 344, 350
HpyF3I	CTNAG	2 cut(s)	254, 428
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	7 cut(s)	136, 172, 187, 224, 283, 331, 704
HspAI	GCGC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	7 cut(s)	97, 628, 634, 640, 660, 732, 812
LpnPI	CCDG	7 cut(s)	49, 150, 331, 365, 735, 744, 776
Lsp1109I	GCAGC	6 cut(s)	88, 344, 356, 359, 413, 529
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	3 cut(s)	230, 314, 807
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	533, 593
MalI	GATC	7 cut(s)	99, 630, 636, 642, 662, 734, 814
MboI	GATC	7 cut(s)	97, 628, 634, 640, 660, 732, 812
MboII	GAAGA	5 cut(s)	44, 150, 153, 580, 873
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	4 cut(s)	59, 586, 678, 785
MlyI	GAGTC	3 cut(s)	184, 400, 832
MmeI	TCCRAC	2 cut(s)	337, 708
MnlI	CCTC	8 cut(s)	226, 249, 353, 356, 426, 429, 435, 494
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	1 cut(s)	851
MslI	CAYNNNNRTG	1 cut(s)	877
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	6 cut(s)	73, 226, 235, 341, 344, 350
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	7 cut(s)	97, 628, 634, 640, 660, 732, 812
NlaIII	CATG	7 cut(s)	136, 172, 187, 224, 283, 331, 704
NlaIV	GGNNCC	1 cut(s)	411
NspI	RCATGY	2 cut(s)	283, 704
PciI	ACATGT	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	719
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	9 cut(s)	78, 81, 334, 337, 346, 349, 352, 403, 544
Ple19I	CGATCG	1 cut(s)	663
PleI	GAGTC	3 cut(s)	183, 399, 831
PpsI	GAGTC	3 cut(s)	183, 399, 831
PscI	ACATGT	1 cut(s)	700
PshBI	ATTAAT	1 cut(s)	851
PspN4I	GGNNCC	1 cut(s)	411
PspOMI	GGGCCC	1 cut(s)	409
PspPI	GGNCC	2 cut(s)	409, 410
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	732
PsyI	GACNNNGTC	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	663
RsaI	GTAC	2 cut(s)	92, 278
RsaNI	GTAC	2 cut(s)	91, 277
RseI	CAYNNNNRTG	1 cut(s)	877
SaqAI	TTAA	1 cut(s)	851
SatI	GCNGC	9 cut(s)	77, 80, 333, 336, 345, 348, 351, 402, 543
Sau3AI	GATC	7 cut(s)	97, 628, 634, 640, 660, 732, 812
Sau96I	GGNCC	2 cut(s)	409, 410
SchI	GAGTC	3 cut(s)	184, 400, 832
SduI	GDGCHC	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	877
Sse9I	AATT	4 cut(s)	59, 586, 678, 785
SsiI	CCGC	7 cut(s)	80, 336, 342, 351, 404, 437, 648
SspMI	CTAG	3 cut(s)	230, 314, 807
StyI	CCWWGG	2 cut(s)	132, 806
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	389, 486, 659, 663
TasI	AATT	4 cut(s)	59, 586, 678, 785
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	3 cut(s)	82, 338, 353
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	1 cut(s)	851
Tru9I	TTAA	1 cut(s)	851
TseI	GCWGC	6 cut(s)	76, 332, 344, 347, 401, 542
TspDTI	ATGAA	4 cut(s)	200, 237, 780, 848
TspGWI	ACGGA	2 cut(s)	108, 725
Tth111I	GACNNNGTC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	851
XapI	RAATTY	2 cut(s)	59, 678
XceI	RCATGY	2 cut(s)	283, 704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmaJI	CCTAGG	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	3 cut(s)	230, 314, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.