Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Reverse (-)

17451657 .. 17454290

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG166300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCAGCATCTTCACTTGATCTCCAAAGAAATAGTGCATCTTCATCTGGGATAATAGGCCGCAGTATGAACGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAATTGGAGGTCCAAAAACATCTTCAGTTGAGAATCGAAGCTCAAGGAAAGTACATGCAAAGCATACTAGAGAAAGCCTGCCAAACCCTTGCTGGTGAAAACAACATGGCAGCTGCAGCTGGAAGCTACAAGGGTAATATTGGAAATAACCAAGGTGTTAATCATGCTGACATGGGAAACCTAAAGGATTTCAATTCTCCTCTCAACTTTCAATCATTTCAAGACCTGAACATATATGGATCTGGCGATCACCTTGATCAACTTCAACAGAACAGCTTGGACAGGCCACCTCTTGATCATCACAGTTTTATGCCAAACAATGATAACATTAATTGCATGGGATCAAAGAAGAGGCCAAGTCCGTATAACAGTGGTAACAGTAGTGGCAAGAGCCCGTTGATTTGGTCTGATGATTTAAGACTTCAAGACTTGGGAACTGCCGCATCATGTCTTGGACCTCAGGATGATCATCAGATTCAGATTGCACCACCATCCATTGAAAGAGGCACCGATCAGATCGAGTCGATTTCAGATATTTATGAATCGAAGCCGATGATTCAAGGGGACGAGAAGAAGTTTGAAGCGGGAAATAAGCTCGAGAGGCCTTCACCACGAAGAGCACCAATGGGATCAGAAAGGATGAACCCCATGATCAACGCTGGTGTGAGACAAGGAAGAAATTCGCCATTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

267

Amino Acids

29.45

Weight (kDa)

5.98

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	26 - 65	4e-22	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	3 cut(s)	61, 549, 692
AclWI	GGATC	3 cut(s)	355, 457, 745
AcsI	RAATTY	1 cut(s)	787
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	8 cut(s)	301, 320, 329, 374, 533, 608, 668, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	6 cut(s)	149, 221, 227, 234, 384, 703
AluI	AGCT	6 cut(s)	149, 221, 227, 234, 384, 703
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	1 cut(s)	769
AlwI	GGATC	3 cut(s)	355, 457, 745
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	4 cut(s)	58, 392, 461, 710
ApeKI	GCWGC	4 cut(s)	5, 218, 221, 224
ApoI	RAATTY	1 cut(s)	787
AseI	ATTAAT	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	787
AspS9I	GGNCC	2 cut(s)	118, 563
AsuHPI	GGTGA	3 cut(s)	215, 350, 708
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	2 cut(s)	118, 563
AxyI	CCTNAGG	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	4 cut(s)	17, 208, 230, 236
BccI	CCATC	1 cut(s)	607
BclI	TGATCA	4 cut(s)	364, 403, 574, 759
BcoDI	GTCTC	1 cut(s)	769
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	6 cut(s)	6, 61, 219, 222, 225, 549
BlsI	GCNGC	6 cut(s)	7, 62, 220, 223, 226, 550
Bme18I	GGWCC	2 cut(s)	118, 563
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	118, 563
BmiI	GGNNCC	1 cut(s)	616
BmsI	GCATC	4 cut(s)	17, 47, 66, 560
BpiI	GAAGAC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse21I	CCTNAGG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	3 cut(s)	577, 599, 753
BseJI	GATNNNNATC	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	581
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	17, 208, 230, 236
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	4 cut(s)	60, 394, 463, 712
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	730
BsiHKCI	CYCGRG	1 cut(s)	704
BslFI	GGGAC	1 cut(s)	686
BsmAI	GTCTC	1 cut(s)	769
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	4 cut(s)	60, 394, 463, 712
BsoBI	CYCGRG	1 cut(s)	704
Bsp1286I	GDGCHC	2 cut(s)	503, 730
BspACI	CCGC	3 cut(s)	61, 549, 692
BspANI	GGCC	4 cut(s)	60, 394, 463, 712
BspCNI	CTCAG	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	616
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	3 cut(s)	355, 457, 745
BspQI	GCTCTTC	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	413, 479, 488
Bst6I	CTCTTC	2 cut(s)	452, 718
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	567
BstF5I	GGATG	3 cut(s)	577, 599, 753
BstMAI	GTCTC	1 cut(s)	769
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 709
BstNSI	RCATGY	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	17, 208, 230, 236
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	567
BsuRI	GGCC	4 cut(s)	60, 394, 463, 712
BtsCI	GGATG	3 cut(s)	577, 599, 753
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	118, 563
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	8 cut(s)	104, 163, 214, 272, 280, 445, 555, 757
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	452, 718
EarI	CTCTTC	2 cut(s)	452, 718
Eco130I	CCWWGG	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	503
Eco47I	GGWCC	2 cut(s)	118, 563
Eco57I	CTGAAG	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	704
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	8 cut(s)	107, 166, 217, 275, 283, 448, 558, 760
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	8 cut(s)	103, 162, 213, 271, 279, 444, 554, 756
FauI	CCCGC	1 cut(s)	685
FbaI	TGATCA	4 cut(s)	364, 403, 574, 759
Fnu4HI	GCNGC	6 cut(s)	6, 61, 219, 222, 225, 549
FokI	GGATG	3 cut(s)	584, 586, 760
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	6 cut(s)	6, 61, 219, 222, 225, 549
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	6 cut(s)	6, 61, 219, 222, 225, 549
HaeIII	GGCC	4 cut(s)	60, 394, 463, 712
Hin1II	CATG	8 cut(s)	107, 166, 217, 275, 283, 448, 558, 760
HinfI	GANTC	5 cut(s)	141, 583, 629, 650, 664
HphI	GGTGA	3 cut(s)	215, 350, 708
Hpy188I	TCNGA	6 cut(s)	517, 582, 588, 624, 640, 742
Hpy188III	TCNNGA	5 cut(s)	329, 401, 533, 569, 706
HpyAV	CCTTC	1 cut(s)	723
HpyCH4III	ACNGT	3 cut(s)	413, 479, 488
HpyCH4V	TGCA	8 cut(s)	38, 79, 91, 103, 166, 224, 444, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 709
HpyF3I	CTNAG	1 cut(s)	567
Hsp92II	CATG	8 cut(s)	107, 166, 217, 275, 283, 448, 558, 760
Ksp22I	TGATCA	4 cut(s)	364, 403, 574, 759
LguI	GCTCTTC	1 cut(s)	718
LpnPI	CCDG	9 cut(s)	33, 186, 199, 213, 336, 347, 376, 554, 753
Lsp1109I	GCAGC	4 cut(s)	17, 208, 230, 236
LweI	GCATC	4 cut(s)	17, 47, 66, 560
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	482
MboII	GAAGA	8 cut(s)	3, 33, 108, 122, 469, 691, 735, 795
MfeI	CAATTG	1 cut(s)	110
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	503, 730
MluCI	AATT	4 cut(s)	110, 301, 439, 787
MlyI	GAGTC	1 cut(s)	638
MnlI	CCTC	8 cut(s)	79, 109, 318, 408, 453, 576, 605, 702
MroXI	GAANNNNTTC	1 cut(s)	787
MseI	TTAA	3 cut(s)	267, 438, 524
MslI	CAYNNNNRTG	1 cut(s)	799
MspA1I	CMGCKG	2 cut(s)	221, 227
MunI	CAATTG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	224, 709
NlaIII	CATG	8 cut(s)	107, 166, 217, 275, 283, 448, 558, 760
NlaIV	GGNNCC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	704
PceI	AGGCCT	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	787
PfeI	GAWTC	4 cut(s)	141, 583, 650, 664
PkrI	GCNGC	6 cut(s)	7, 62, 220, 223, 226, 550
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PshBI	ATTAAT	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	2 cut(s)	118, 563
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	221, 227
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	799
SapI	GCTCTTC	1 cut(s)	718
SaqAI	TTAA	3 cut(s)	267, 438, 524
SatI	GCNGC	6 cut(s)	6, 61, 219, 222, 225, 549
Sau96I	GGNCC	2 cut(s)	118, 563
SchI	GAGTC	1 cut(s)	638
SduI	GDGCHC	2 cut(s)	503, 730
SfaNI	GCATC	4 cut(s)	17, 47, 66, 560
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	704
SinI	GGWCC	2 cut(s)	118, 563
SlaI	CTCGAG	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	799
SmlI	CTYRAG	2 cut(s)	150, 704
SmoI	CTYRAG	2 cut(s)	150, 704
Sse9I	AATT	4 cut(s)	110, 301, 439, 787
SseBI	AGGCCT	1 cut(s)	712
SsiI	CCGC	3 cut(s)	61, 549, 692
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	712
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	413, 479, 488
TaqI	TCGA	5 cut(s)	144, 627, 632, 653, 705
TasI	AATT	4 cut(s)	110, 301, 439, 787
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	2 cut(s)	63, 551
TfiI	GAWTC	4 cut(s)	141, 583, 650, 664
Tru1I	TTAA	3 cut(s)	267, 438, 524
Tru9I	TTAA	3 cut(s)	267, 438, 524
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	4 cut(s)	5, 218, 221, 224
TspDTI	ATGAA	5 cut(s)	33, 83, 120, 663, 764
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	2 cut(s)	118, 563
VspI	ATTAAT	1 cut(s)	438
XapI	RAATTY	1 cut(s)	787
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	787
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.