Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Forward (+)

24081509 .. 24083269

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTCCAACACCATCACCAACACCACAAGAAGCCATCAACTATGAATTCCCATGACAGACCCATGTGTGTCCAAGGGGACTCTGGCCTTGTTCTCACCACCGACCCTAAGCCTCGTCTGCGATGGACCGTCGAGCTTCATGAACGCTTTGTCGATGCTGTCACTCAGCTTGGAGGACCAGACAAGGCTACACCTAAAACTATCATGAGGGTTATGGGTGTGAAGGGTCTTACACTTTACCACCTCAAGAGCCACCTCCAGAAATTTAGGCTTGGAAAGCAACCTCACAAGGAATTCAATGACCATTCAATTAAGGATCATGCATCTCCACTGGATCTCCAACGAAATAGTGCATCTTCTCCTGCCATAATAAACCGCAGTATGAATGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAATTGGAGGTCCAAAAACACCTTCAATTGAGAATTGAGGCTCAGGGAAAGTACATGCAAAGCATATTAGAGAAGGCCTGCCAAACCCTTGCTGGTGAGAACAATATGGCAGCTGCAGCAGGAAGTTACAAGGGTAATATTGGAAACCAAAGTGTTAACCCTACTGACATGGGATCTTTGAAAGATTTCAATTCTCCTCTCAACTTTCCATCTTTTCAAGACCTTAACATCTATGGAGGAGATCACCTTGATCTTCAGCAAAACTTGGACAGGCCACCTCTTGATCATTGTTTCATGCCGAATAACGATAACAACATTTGCTTGGGACCAAAGAAAAGGCCTAGCCCTTATAGTGGTAGCGGCAAGAGCCCCTTGATTTGGTCTGATGATCGATCCGGCTTCAAGACTTGGGAACAGCCGCATCATGTCTTGGACCTCAGGATGATCCTTTCAAATCATCAGATTCAATTCAAATTGCTCCGCCATCTATCGAGAGAGGCTCAGAGATCGATTCTATTTCAGACATTTACGAATCCAAGCCAATGCTCCAAGGGGATGACAAGAAGTTTGATTCAGCAAATAAACTTGAAAGGCCTTCGCCACGGAGAGCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

347

Amino Acids

39.5

Weight (kDa)

9.46

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	39 - 89	8.9e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	131 - 170	5.3e-22	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	376, 783, 842, 904
AclWI	GGATC	5 cut(s)	324, 342, 604, 810, 862
AcsI	RAATTY	3 cut(s)	46, 263, 293
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	776, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	3 cut(s)	136, 169, 536
AluI	AGCT	3 cut(s)	136, 169, 536
Alw21I	GWGCWC	1 cut(s)	1035
AlwI	GGATC	5 cut(s)	324, 342, 604, 810, 862
AoxI	GGCC	5 cut(s)	85, 498, 695, 761, 1015
ApeKI	GCWGC	3 cut(s)	533, 536, 539
ApoI	RAATTY	3 cut(s)	46, 263, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	973, 1005
Asp700I	GAANNNNTTC	1 cut(s)	608
AspS9I	GGNCC	5 cut(s)	126, 176, 433, 749, 856
AsuHPI	GGTGA	4 cut(s)	8, 88, 530, 659
AvaII	GGWCC	5 cut(s)	126, 176, 433, 749, 856
AxyI	CCTNAGG	1 cut(s)	860
BanII	GRGCYC	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	1035
BbvI	GCAGC	3 cut(s)	523, 545, 551
BccI	CCATC	5 cut(s)	21, 43, 117, 640, 915
BclI	TGATCA	1 cut(s)	706
BfaI	CTAG	2 cut(s)	765, 1039
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	5 cut(s)	534, 537, 540, 784, 842
BlsI	GCNGC	5 cut(s)	535, 538, 541, 785, 843
Bme18I	GGWCC	5 cut(s)	126, 176, 433, 749, 856
BmgT120I	GGNCC	5 cut(s)	126, 176, 433, 749, 856
BmiI	GGNNCC	1 cut(s)	750
BmsI	GCATC	5 cut(s)	145, 332, 362, 381, 853
BpiI	GAAGAC	1 cut(s)	418
BplI	GAGNNNNNCTC	2 cut(s)	907, 939
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	108, 465
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	2 cut(s)	814, 932
BsaJI	CCNNGG	3 cut(s)	73, 972, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	776, 801
Bse1I	ACTGG	1 cut(s)	336
Bse21I	CCTNAGG	1 cut(s)	860
BseCI	ATCGAT	2 cut(s)	814, 932
BseDI	CCNNGG	3 cut(s)	73, 972, 1024
BseGI	GGATG	2 cut(s)	870, 984
BseLI	CCNNNNNNNGG	2 cut(s)	776, 801
BseMII	CTCAG	4 cut(s)	179, 479, 874, 938
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	609, 675
BseXI	GCAGC	3 cut(s)	523, 545, 551
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	5 cut(s)	87, 500, 697, 763, 1017
BshVI	ATCGAT	2 cut(s)	814, 932
BsiHKAI	GWGCWC	1 cut(s)	1035
BsiSI	CCGG	1 cut(s)	819
BslFI	GGGAC	2 cut(s)	92, 762
BslI	CCNNNNNNNGG	2 cut(s)	776, 801
BsmFI	GGGAC	2 cut(s)	92, 762
BsnI	GGCC	5 cut(s)	87, 500, 697, 763, 1017
Bsp1286I	GDGCHC	2 cut(s)	794, 1035
BspACI	CCGC	4 cut(s)	376, 783, 842, 904
BspANI	GGCC	5 cut(s)	87, 500, 697, 763, 1017
BspCNI	CTCAG	4 cut(s)	178, 478, 873, 937
BspDI	ATCGAT	2 cut(s)	814, 932
BspHI	TCATGA	2 cut(s)	139, 204
BspLI	GGNNCC	1 cut(s)	750
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	5 cut(s)	324, 342, 604, 810, 862
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	73, 972, 1024
BssT1I	CCWWGG	2 cut(s)	73, 972
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	5 cut(s)	108, 165, 465, 860, 924
BstDSI	CCRYGG	1 cut(s)	1024
BstF5I	GGATG	2 cut(s)	870, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 277, 539, 789
BstNSI	RCATGY	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	523, 545, 551
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	2 cut(s)	334, 596
BstYI	RGATCY	2 cut(s)	334, 596
Bsu15I	ATCGAT	2 cut(s)	814, 932
Bsu36I	CCTNAGG	1 cut(s)	860
BsuRI	GGCC	5 cut(s)	87, 500, 697, 763, 1017
BsuTUI	ATCGAT	2 cut(s)	814, 932
BtgI	CCRYGG	1 cut(s)	1024
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	870, 984
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	502
CciI	TCATGA	2 cut(s)	139, 204
Cfr13I	GGNCC	5 cut(s)	126, 176, 433, 749, 856
ClaI	ATCGAT	2 cut(s)	814, 932
Csp6I	GTAC	1 cut(s)	475
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	5 cut(s)	108, 165, 465, 860, 924
EciI	GGCGGA	1 cut(s)	893
Eco130I	CCWWGG	2 cut(s)	73, 972
Eco147I	AGGCCT	3 cut(s)	500, 763, 1017
Eco24I	GRGCYC	1 cut(s)	794
Eco47I	GGWCC	5 cut(s)	126, 176, 433, 749, 856
Eco57I	CTGAAG	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	860
EcoRI	GAATTC	2 cut(s)	46, 293
EcoT14I	CCWWGG	2 cut(s)	73, 972
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	794
ErhI	CCWWGG	2 cut(s)	73, 972
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	2 cut(s)	92, 762
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	5 cut(s)	534, 537, 540, 784, 842
FokI	GGATG	2 cut(s)	877, 991
FriOI	GRGCYC	1 cut(s)	794
Fsp4HI	GCNGC	5 cut(s)	534, 537, 540, 784, 842
FspBI	CTAG	2 cut(s)	765, 1039
GluI	GCNGC	5 cut(s)	534, 537, 540, 784, 842
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	5 cut(s)	87, 500, 697, 763, 1017
HapII	CCGG	1 cut(s)	819
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	5 cut(s)	80, 886, 934, 955, 994
HpaI	GTTAAC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	819
HphI	GGTGA	4 cut(s)	8, 88, 530, 659
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	4 cut(s)	808, 885, 927, 945
Hpy188III	TCNNGA	9 cut(s)	140, 205, 247, 259, 641, 704, 826, 862, 915
Hpy8I	GTNNAC	1 cut(s)	580
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	217, 455, 490, 1028
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	7 cut(s)	323, 353, 394, 406, 418, 481, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 277, 539, 789
HpyF3I	CTNAG	5 cut(s)	108, 165, 465, 860, 924
Ksp22I	TGATCA	1 cut(s)	706
KspAI	GTTAAC	1 cut(s)	580
LmnI	GCTCC	2 cut(s)	906, 974
Lsp1109I	GCAGC	3 cut(s)	523, 545, 551
LweI	GCATC	5 cut(s)	145, 332, 362, 381, 853
MaeI	CTAG	2 cut(s)	765, 1039
MaeIII	GTNAC	2 cut(s)	160, 548
MboII	GAAGA	3 cut(s)	348, 423, 668
MfeI	CAATTG	2 cut(s)	425, 449
MflI	RGATCY	2 cut(s)	334, 596
MhlI	GDGCHC	2 cut(s)	794, 1035
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	31, 364
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	3 cut(s)	312, 579, 648
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	819
MunI	CAATTG	2 cut(s)	425, 449
MwoI	GCNNNNNNNGC	4 cut(s)	118, 277, 539, 789
NlaIV	GGNNCC	1 cut(s)	750
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	481
PagI	TCATGA	2 cut(s)	139, 204
PceI	AGGCCT	3 cut(s)	500, 763, 1017
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	4 cut(s)	886, 934, 955, 994
PkrI	GCNGC	5 cut(s)	535, 538, 541, 785, 843
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	5 cut(s)	126, 176, 433, 749, 856
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	2 cut(s)	334, 596
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SaqAI	TTAA	3 cut(s)	312, 579, 648
SatI	GCNGC	5 cut(s)	534, 537, 540, 784, 842
Sau96I	GGNCC	5 cut(s)	126, 176, 433, 749, 856
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	794, 1035
SfaNI	GCATC	5 cut(s)	145, 332, 362, 381, 853
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	5 cut(s)	126, 176, 433, 749, 856
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SseBI	AGGCCT	3 cut(s)	500, 763, 1017
SsiI	CCGC	4 cut(s)	376, 783, 842, 904
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	2 cut(s)	765, 1039
StuI	AGGCCT	3 cut(s)	500, 763, 1017
StyI	CCWWGG	2 cut(s)	73, 972
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	5 cut(s)	132, 153, 814, 914, 932
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	2 cut(s)	786, 844
TfiI	GAWTC	4 cut(s)	886, 934, 955, 994
Tru1I	TTAA	3 cut(s)	312, 579, 648
Tru9I	TTAA	3 cut(s)	312, 579, 648
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	533, 536, 539
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	6 cut(s)	59, 128, 156, 398, 435, 706
TspGWI	ACGGA	1 cut(s)	1041
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	5 cut(s)	126, 176, 433, 749, 856
XapI	RAATTY	3 cut(s)	46, 263, 293
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	2 cut(s)	80, 512
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	765, 1039
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.