Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007223.1

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Forward (+)

32621 .. 34435

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007223.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgaattctcatgagagccacagacccatgtgcgtccaaggcgactctggccttgtcctcaccactgaccctaagcctcgtctccggtggactgtcgagcttcatgaacgattcgtggatgctgtgactcaactcggaggaccagacaaggctacacctaagactatcatgagggttatgggtgtgaagggtctcacactttaccacctcaagagccacctccagaaatttaggctaggaaagcaacctcacaaggaattcaatgatcactcgattaaagatcatgcatcttcacttgatctccaaagaaatagtgcatcttcatctgggataataggccgcagtatgaacgagatgcaaatggaggtgcagagaagactgcatgaacaattggaggtccaaaaacatcttcagttgagaatcgaagctcaaggaaagtacatgcaaagcatactagagaaagcctgccaaacccttgctggtgaaaacaacatggcagctgcagctggaagctacaagggtaatattggaaataaccaaggtgttaatcatgctgacatgggaaacctaaaggatttcaattctcctctcaactttccatcatttcaagacctgaacatatatggatctggcgatcaccttgatcaacttcaacagaacagcttggacaggccacctcttgatcatcacagttttatgccaaacaatgataacattaattgcatgggatcaaagaagaggccaagtccgtataacagtggtaacagtagtggcaagagcccgttgatttggtctgatgatttaagacttcaagacttgggaactgccgcatcatgtcttggacctcaggatgatcatcagattcagattgcaccaccatccattgaaagaggcactgatcagatcgagtcgatttcagatatttatgaatcgaagccgatgattcaaggggacgagaagaagtttgaagcgggaaataagctcgagaggccttcaccacgtagagcaccaatgggatcagaaaggatgaaccccatgatcaacgctggtgtgagacaaggaagaaattcgccatttgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

360

Amino Acids

40.09

Weight (kDa)

7.78

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	340, 828, 971
AclWI	GGATC	3 cut(s)	634, 736, 1024
AcsI	RAATTY	4 cut(s)	4, 227, 257, 1066
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	440
AgsI	TTSAA	8 cut(s)	262, 580, 608, 653, 812, 887, 947, 968
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AluBI	AGCT	7 cut(s)	100, 428, 500, 506, 513, 663, 982
AluI	AGCT	7 cut(s)	100, 428, 500, 506, 513, 663, 982
Alw21I	GWGCWC	1 cut(s)	1009
Alw26I	GTCTC	3 cut(s)	86, 197, 1048
AlwI	GGATC	3 cut(s)	634, 736, 1024
Ama87I	CYCGRG	1 cut(s)	983
AoxI	GGCC	5 cut(s)	49, 337, 671, 740, 989
ApeKI	GCWGC	3 cut(s)	497, 500, 503
ApoI	RAATTY	4 cut(s)	4, 227, 257, 1066
AseI	ATTAAT	1 cut(s)	717
Asp700I	GAANNNNTTC	1 cut(s)	1066
AspS9I	GGNCC	3 cut(s)	140, 397, 842
AsuHPI	GGTGA	4 cut(s)	52, 494, 629, 987
AvaI	CYCGRG	1 cut(s)	983
AvaII	GGWCC	3 cut(s)	140, 397, 842
AxyI	CCTNAGG	1 cut(s)	846
BanII	GRGCYC	1 cut(s)	782
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	1009
BbvI	GCAGC	3 cut(s)	487, 509, 515
BccI	CCATC	2 cut(s)	607, 886
BclI	TGATCA	6 cut(s)	265, 643, 682, 853, 898, 1038
BcoDI	GTCTC	3 cut(s)	86, 197, 1048
BfaI	CTAG	2 cut(s)	236, 455
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	5 cut(s)	340, 498, 501, 504, 828
BlsI	GCNGC	5 cut(s)	341, 499, 502, 505, 829
Bme18I	GGWCC	3 cut(s)	140, 397, 842
BmeT110I	CYCGRG	1 cut(s)	983
BmgT120I	GGNCC	3 cut(s)	140, 397, 842
BmsI	GCATC	5 cut(s)	109, 296, 326, 345, 839
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	194, 414
BsaAI	YACGTR	1 cut(s)	1001
BsaBI	GATNNNNATC	1 cut(s)	855
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	37, 538
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bse21I	CCTNAGG	1 cut(s)	846
Bse8I	GATNNNNATC	1 cut(s)	855
BseDI	CCNNGG	2 cut(s)	37, 538
BseGI	GGATG	4 cut(s)	124, 856, 878, 1032
BseJI	GATNNNNATC	1 cut(s)	855
BseMII	CTCAG	1 cut(s)	860
BseRI	GAGGAG	1 cut(s)	576
BseXI	GCAGC	3 cut(s)	487, 509, 515
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	5 cut(s)	51, 339, 673, 742, 991
BsiHKAI	GWGCWC	1 cut(s)	1009
BsiHKCI	CYCGRG	1 cut(s)	983
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	965
BsmAI	GTCTC	3 cut(s)	86, 197, 1048
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	965
BsnI	GGCC	5 cut(s)	51, 339, 673, 742, 991
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	983
Bsp1286I	GDGCHC	2 cut(s)	782, 1009
BspACI	CCGC	3 cut(s)	340, 828, 971
BspANI	GGCC	5 cut(s)	51, 339, 673, 742, 991
BspCNI	CTCAG	1 cut(s)	859
BspHI	TCATGA	3 cut(s)	10, 103, 168
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	3 cut(s)	634, 736, 1024
BspTNI	GGTCTC	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	37, 538
BssT1I	CCWWGG	2 cut(s)	37, 538
Bst4CI	ACNGT	4 cut(s)	94, 692, 758, 767
Bst6I	CTCTTC	1 cut(s)	731
BstBAI	YACGTR	1 cut(s)	1001
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	72, 159, 846
BstF5I	GGATG	4 cut(s)	124, 856, 878, 1032
BstMAI	GTCTC	3 cut(s)	86, 197, 1048
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 48, 241, 503, 988
BstNSI	RCATGY	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	487, 509, 515
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	626
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	5 cut(s)	51, 339, 673, 742, 991
BtsCI	GGATG	4 cut(s)	124, 856, 878, 1032
BtsIMutI	CAGTG	3 cut(s)	63, 763, 894
Cac8I	GCNNGC	1 cut(s)	466
CciI	TCATGA	3 cut(s)	10, 103, 168
Cfr13I	GGNCC	3 cut(s)	140, 397, 842
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	439
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	72, 159, 846
Eam1104I	CTCTTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	731
Eco130I	CCWWGG	2 cut(s)	37, 538
Eco147I	AGGCCT	1 cut(s)	991
Eco24I	GRGCYC	1 cut(s)	782
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	3 cut(s)	140, 397, 842
Eco57I	CTGAAG	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	846
Eco88I	CYCGRG	1 cut(s)	983
EcoRI	GAATTC	2 cut(s)	4, 257
EcoT14I	CCWWGG	2 cut(s)	37, 538
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	2 cut(s)	37, 538
Esp3I	CGTCTC	1 cut(s)	86
FaqI	GGGAC	1 cut(s)	965
FauI	CCCGC	1 cut(s)	964
FbaI	TGATCA	6 cut(s)	265, 643, 682, 853, 898, 1038
Fnu4HI	GCNGC	5 cut(s)	340, 498, 501, 504, 828
FokI	GGATG	4 cut(s)	131, 863, 865, 1039
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	5 cut(s)	340, 498, 501, 504, 828
FspBI	CTAG	2 cut(s)	236, 455
GluI	GCNGC	5 cut(s)	340, 498, 501, 504, 828
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	5 cut(s)	51, 339, 673, 742, 991
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	22
HinfI	GANTC	8 cut(s)	44, 111, 127, 420, 862, 908, 929, 943
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	4 cut(s)	52, 494, 629, 987
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	7 cut(s)	137, 796, 861, 867, 903, 919, 1021
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	181, 1002
HpyCH4III	ACNGT	4 cut(s)	94, 692, 758, 767
HpyCH4IV	ACGT	1 cut(s)	1000
HpyCH4V	TGCA	9 cut(s)	287, 317, 358, 370, 382, 445, 503, 723, 872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 48, 241, 503, 988
HpyF3I	CTNAG	3 cut(s)	72, 159, 846
HpySE526I	ACGT	1 cut(s)	1000
Ksp22I	TGATCA	6 cut(s)	265, 643, 682, 853, 898, 1038
Lsp1109I	GCAGC	3 cut(s)	487, 509, 515
LweI	GCATC	5 cut(s)	109, 296, 326, 345, 839
MaeI	CTAG	2 cut(s)	236, 455
MaeII	ACGT	1 cut(s)	1000
MaeIII	GTNAC	2 cut(s)	124, 761
MboII	GAAGA	7 cut(s)	282, 312, 387, 401, 748, 970, 1074
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	1 cut(s)	626
MhlI	GDGCHC	2 cut(s)	782, 1009
MluCI	AATT	7 cut(s)	4, 227, 257, 389, 580, 718, 1066
MlyI	GAGTC	3 cut(s)	38, 121, 917
Mph1103I	ATGCAT	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	1066
MseI	TTAA	4 cut(s)	276, 546, 717, 803
MslI	CAYNNNNRTG	1 cut(s)	1078
MspA1I	CMGCKG	2 cut(s)	500, 506
MspI	CCGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	389
MwoI	GCNNNNNNNGC	5 cut(s)	39, 48, 241, 503, 988
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	445
PaeR7I	CTCGAG	1 cut(s)	983
PagI	TCATGA	3 cut(s)	10, 103, 168
PceI	AGGCCT	1 cut(s)	991
PdmI	GAANNNNTTC	1 cut(s)	1066
PfeI	GAWTC	5 cut(s)	111, 420, 862, 929, 943
PkrI	GCNGC	5 cut(s)	341, 499, 502, 505, 829
PleI	GAGTC	3 cut(s)	38, 121, 916
PpsI	GAGTC	3 cut(s)	38, 121, 916
Ppu21I	YACGTR	1 cut(s)	1001
PshBI	ATTAAT	1 cut(s)	717
PspPI	GGNCC	3 cut(s)	140, 397, 842
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	626
PvuII	CAGCTG	2 cut(s)	500, 506
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	1078
SaqAI	TTAA	4 cut(s)	276, 546, 717, 803
SatI	GCNGC	5 cut(s)	340, 498, 501, 504, 828
Sau96I	GGNCC	3 cut(s)	140, 397, 842
SchI	GAGTC	3 cut(s)	38, 121, 917
SduI	GDGCHC	2 cut(s)	782, 1009
SfaNI	GCATC	5 cut(s)	109, 296, 326, 345, 839
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	983
SinI	GGWCC	3 cut(s)	140, 397, 842
SlaI	CTCGAG	1 cut(s)	983
SmiMI	CAYNNNNRTG	1 cut(s)	1078
SmlI	CTYRAG	3 cut(s)	209, 429, 983
SmoI	CTYRAG	3 cut(s)	209, 429, 983
Sse9I	AATT	7 cut(s)	4, 227, 257, 389, 580, 718, 1066
SseBI	AGGCCT	1 cut(s)	991
SsiI	CCGC	3 cut(s)	340, 828, 971
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	236, 455
StuI	AGGCCT	1 cut(s)	991
StyI	CCWWGG	2 cut(s)	37, 538
TaaI	ACNGT	4 cut(s)	94, 692, 758, 767
TaiI	ACGT	1 cut(s)	1003
TaqI	TCGA	7 cut(s)	96, 272, 423, 906, 911, 932, 984
TasI	AATT	7 cut(s)	4, 227, 257, 389, 580, 718, 1066
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	2 cut(s)	342, 830
TfiI	GAWTC	5 cut(s)	111, 420, 862, 929, 943
Tru1I	TTAA	4 cut(s)	276, 546, 717, 803
Tru9I	TTAA	4 cut(s)	276, 546, 717, 803
TscAI	CASTG	3 cut(s)	70, 763, 901
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	497, 500, 503
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	8 cut(s)	17, 92, 120, 312, 362, 399, 942, 1043
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	3 cut(s)	70, 763, 901
VpaK11BI	GGWCC	3 cut(s)	140, 397, 842
VspI	ATTAAT	1 cut(s)	717
XapI	RAATTY	4 cut(s)	4, 227, 257, 1066
XceI	RCATGY	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	2 cut(s)	44, 476
XhoI	CTCGAG	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	1066
XspI	CTAG	2 cut(s)	236, 455
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.