Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Reverse (-)

8443367 .. 8445778

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTTCCAACAGCACAAGAAGCCATCAAGTATGAATTCCCATGAGAGCCACAGACCTATGTGCGTCCAAGGGGACTCTGGCCTTGTTCTCACCACTGACCCTAAGCCTCGTCTCCGGTGGACTGTCGAGCTTCATGAACGATTCGTCGATGCTGTGACTCAACTCGGAGGACCAGACAAGGCTACACCAAAGACTATCATGAGGGTCATGGGTGTGAAGGGTCTCACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGGCTCGGAAAGCAACCTCACAAGGAATTCAATGATCACTCGATTAAAGATCATGCATCTTCACTTGATCTTCAAAGAAGTAGTGCATCTTCATCTGGGATAATAGGCCGCAGTATGAACGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAATTGGAGTTGAGAATAGAAGCTCAAGGGAAGTACATGCAAAGCATATTAGAGAAAGCCTGCCAAACCCTCGCTGGTGAAAACAACATGACAGCTGCTGCAGCTGGAAGCTACAAGGGTAATATTGGAAACAATCAAGGTGTTAATCATGCTGACATGGGAAACCTGAAAGATTTCAATTCTCCTCTCAACTTTCCATCATTTCAAGACCTGAACATATACGGATCTGGTGATCACCTTGATCAACTTCAACAGAACAGCTTGGACAGGCCACCTCTTGATCATCACAGTTTTATGCCAAACAATGATAACATCAATTGCATGGGATCGAAGAAGAGGCCAAGTCCTTATAACAGTGGTAACAGTAGTGGCAAGAGCCCTTTGATATGGTCTGATGATTTAAGACTTCAAGACCTTGGAACAGCGGCATCATGTCTTGGACCTCAGGATGATCACCAGATTCAAATTGCACCACCGTCCATTGAAAGAGGCACTGATCAGATCGATTCGATTTCAGATATTTACGAATCGAAGCCGATGATTCAAGGAGACGAGAAGAAGTTTGAAGCCGGAAATAAGCTGGAGAGGCCTTCACCACGGAGATCAGCACCAATGGGATCAGAAAGGATGAACCCCATGATCAACGCGGGTGTTAGACAAGGAAGAAATTCGCCATTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

367

Amino Acids

40.71

Weight (kDa)

8.27

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	37 - 87	9.7e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	129 - 162	1e-12	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AccII	CGCG	1 cut(s)	1064
AciI	CCGC	3 cut(s)	370, 842, 1064
AclWI	GGATC	3 cut(s)	649, 751, 1042
AcsI	RAATTY	4 cut(s)	34, 257, 287, 1084
AfaI	GTAC	1 cut(s)	452
AluBI	AGCT	7 cut(s)	130, 440, 512, 521, 528, 678, 997
AluI	AGCT	7 cut(s)	130, 440, 512, 521, 528, 678, 997
Alw26I	GTCTC	3 cut(s)	116, 227, 960
AlwI	GGATC	3 cut(s)	649, 751, 1042
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	5 cut(s)	79, 367, 686, 755, 1004
ApeKI	GCWGC	3 cut(s)	512, 515, 518
ApoI	RAATTY	4 cut(s)	34, 257, 287, 1084
Asp700I	GAANNNNTTC	2 cut(s)	590, 1084
AspS9I	GGNCC	2 cut(s)	170, 857
AsuHPI	GGTGA	6 cut(s)	82, 506, 644, 659, 863, 1002
AvaII	GGWCC	2 cut(s)	170, 857
AxyI	CCTNAGG	1 cut(s)	861
BanII	GRGCYC	1 cut(s)	797
BarI	GAAGNNNNNNTAC	2 cut(s)	334, 366
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	499, 502, 530
BccI	CCATC	3 cut(s)	31, 255, 622
BclI	TGATCA	7 cut(s)	295, 649, 658, 697, 868, 913, 1056
BcoDI	GTCTC	3 cut(s)	116, 227, 960
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	5 cut(s)	370, 513, 516, 519, 843
BlsI	GCNGC	5 cut(s)	371, 514, 517, 520, 844
Bme18I	GGWCC	2 cut(s)	170, 857
BmgT120I	GGNCC	2 cut(s)	170, 857
BmsI	GCATC	5 cut(s)	139, 326, 356, 375, 854
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	2 cut(s)	236, 1019
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	224, 426
Bsa29I	ATCGAT	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	3 cut(s)	67, 832, 1013
BsaWI	WCCGGW	1 cut(s)	114
Bse21I	CCTNAGG	1 cut(s)	861
BseCI	ATCGAT	1 cut(s)	921
BseDI	CCNNGG	3 cut(s)	67, 832, 1013
BseGI	GGATG	2 cut(s)	871, 1050
BseMII	CTCAG	1 cut(s)	875
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	499, 502, 530
BsgI	GTGCAG	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	1064
BshFI	GGCC	5 cut(s)	81, 369, 688, 757, 1006
BshVI	ATCGAT	1 cut(s)	921
BsiSI	CCGG	2 cut(s)	115, 987
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	3 cut(s)	116, 227, 960
BsmBI	CGTCTC	2 cut(s)	116, 960
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	5 cut(s)	81, 369, 688, 757, 1006
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	797
BspACI	CCGC	3 cut(s)	370, 842, 1064
BspANI	GGCC	5 cut(s)	81, 369, 688, 757, 1006
BspCNI	CTCAG	1 cut(s)	874
BspDI	ATCGAT	1 cut(s)	921
BspFNI	CGCG	1 cut(s)	1064
BspHI	TCATGA	2 cut(s)	133, 198
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	3 cut(s)	649, 751, 1042
BspTNI	GGTCTC	1 cut(s)	227
BssECI	CCNNGG	3 cut(s)	67, 832, 1013
BssT1I	CCWWGG	2 cut(s)	67, 832
Bst4CI	ACNGT	5 cut(s)	124, 707, 773, 782, 894
Bst6I	CTCTTC	1 cut(s)	746
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	102, 861
BstDSI	CCRYGG	1 cut(s)	1013
BstF5I	GGATG	2 cut(s)	871, 1050
BstFNI	CGCG	1 cut(s)	1064
BstMAI	GTCTC	3 cut(s)	116, 227, 960
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 271, 518, 1003
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	1064
BstV1I	GCAGC	3 cut(s)	499, 502, 530
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	921
Bsu36I	CCTNAGG	1 cut(s)	861
BsuRI	GGCC	5 cut(s)	81, 369, 688, 757, 1006
BsuTUI	ATCGAT	1 cut(s)	921
BtgI	CCRYGG	1 cut(s)	1013
BtsCI	GGATG	2 cut(s)	871, 1050
BtsIMutI	CAGTG	3 cut(s)	93, 778, 909
Cac8I	GCNNGC	1 cut(s)	478
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	2 cut(s)	133, 198
Cfr13I	GGNCC	2 cut(s)	170, 857
ClaI	ATCGAT	1 cut(s)	921
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	451
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	102, 861
Eam1104I	CTCTTC	1 cut(s)	746
EarI	CTCTTC	1 cut(s)	746
Eco130I	CCWWGG	2 cut(s)	67, 832
Eco147I	AGGCCT	1 cut(s)	1006
Eco24I	GRGCYC	1 cut(s)	797
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	170, 857
Eco81I	CCTNAGG	1 cut(s)	861
EcoRI	GAATTC	2 cut(s)	34, 287
EcoT14I	CCWWGG	2 cut(s)	67, 832
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	797
ErhI	CCWWGG	2 cut(s)	67, 832
Esp3I	CGTCTC	2 cut(s)	116, 960
FaqI	GGGAC	1 cut(s)	86
FauI	CCCGC	1 cut(s)	1057
FbaI	TGATCA	7 cut(s)	295, 649, 658, 697, 868, 913, 1056
Fnu4HI	GCNGC	5 cut(s)	370, 513, 516, 519, 843
FokI	GGATG	2 cut(s)	878, 1057
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	5 cut(s)	370, 513, 516, 519, 843
GluI	GCNGC	5 cut(s)	370, 513, 516, 519, 843
GsuI	CTGGAG	2 cut(s)	236, 1019
HaeIII	GGCC	5 cut(s)	81, 369, 688, 757, 1006
HapII	CCGG	2 cut(s)	115, 987
HgaI	GACGC	1 cut(s)	52
HinfI	GANTC	7 cut(s)	74, 141, 157, 877, 923, 944, 958
HpaII	CCGG	2 cut(s)	115, 987
HphI	GGTGA	6 cut(s)	82, 506, 644, 659, 863, 1002
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	6 cut(s)	167, 269, 811, 918, 934, 1039
Hpy188III	TCNNGA	8 cut(s)	134, 199, 241, 253, 623, 695, 827, 863
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	211, 1017
HpyCH4III	ACNGT	5 cut(s)	124, 707, 773, 782, 894
HpyCH4V	TGCA	9 cut(s)	317, 347, 388, 400, 412, 457, 518, 738, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 271, 518, 1003
HpyF3I	CTNAG	2 cut(s)	102, 861
Ksp22I	TGATCA	7 cut(s)	295, 649, 658, 697, 868, 913, 1056
Lsp1109I	GCAGC	3 cut(s)	499, 502, 530
LweI	GCATC	5 cut(s)	139, 326, 356, 375, 854
MaeIII	GTNAC	2 cut(s)	154, 776
MboII	GAAGA	8 cut(s)	312, 323, 342, 417, 760, 763, 985, 1092
MfeI	CAATTG	2 cut(s)	419, 733
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	8 cut(s)	34, 257, 287, 419, 595, 733, 882, 1084
MlyI	GAGTC	2 cut(s)	68, 151
MmeI	TCCRAC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	2 cut(s)	590, 1084
MseI	TTAA	3 cut(s)	306, 561, 818
MslI	CAYNNNNRTG	2 cut(s)	212, 1096
MspA1I	CMGCKG	3 cut(s)	512, 521, 842
MspI	CCGG	2 cut(s)	115, 987
MunI	CAATTG	2 cut(s)	419, 733
MvnI	CGCG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	4 cut(s)	19, 271, 518, 1003
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	2 cut(s)	133, 198
PceI	AGGCCT	1 cut(s)	1006
PdmI	GAANNNNTTC	2 cut(s)	590, 1084
PfeI	GAWTC	5 cut(s)	141, 877, 923, 944, 958
PkrI	GCNGC	5 cut(s)	371, 514, 517, 520, 844
PleI	GAGTC	2 cut(s)	68, 151
PpsI	GAGTC	2 cut(s)	68, 151
PsiI	TTATAA	1 cut(s)	768
PspPI	GGNCC	2 cut(s)	170, 857
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	2 cut(s)	512, 521
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	2 cut(s)	212, 1096
SaqAI	TTAA	3 cut(s)	306, 561, 818
SatI	GCNGC	5 cut(s)	370, 513, 516, 519, 843
Sau96I	GGNCC	2 cut(s)	170, 857
SchI	GAGTC	2 cut(s)	68, 151
SduI	GDGCHC	1 cut(s)	797
SfaNI	GCATC	5 cut(s)	139, 326, 356, 375, 854
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	170, 857
SmiMI	CAYNNNNRTG	2 cut(s)	212, 1096
SmlI	CTYRAG	2 cut(s)	239, 441
SmoI	CTYRAG	2 cut(s)	239, 441
Sse9I	AATT	8 cut(s)	34, 257, 287, 419, 595, 733, 882, 1084
SseBI	AGGCCT	1 cut(s)	1006
SsiI	CCGC	3 cut(s)	370, 842, 1064
SspI	AATATT	1 cut(s)	541
StuI	AGGCCT	1 cut(s)	1006
StyI	CCWWGG	2 cut(s)	67, 832
TaaI	ACNGT	5 cut(s)	124, 707, 773, 782, 894
TaqI	TCGA	7 cut(s)	126, 147, 302, 746, 921, 926, 947
TasI	AATT	8 cut(s)	34, 257, 287, 419, 595, 733, 882, 1084
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	2 cut(s)	372, 845
TfiI	GAWTC	5 cut(s)	141, 877, 923, 944, 958
Tru1I	TTAA	3 cut(s)	306, 561, 818
Tru9I	TTAA	3 cut(s)	306, 561, 818
TscAI	CASTG	3 cut(s)	100, 778, 916
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	512, 515, 518
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	7 cut(s)	47, 122, 150, 342, 392, 429, 1061
TspGWI	ACGGA	2 cut(s)	654, 1030
TspRI	CASTG	3 cut(s)	100, 778, 916
VpaK11BI	GGWCC	2 cut(s)	170, 857
XapI	RAATTY	4 cut(s)	34, 257, 287, 1084
XceI	RCATGY	1 cut(s)	457
XcmI	CCANNNNNNNNNTGG	2 cut(s)	74, 488
XmnI	GAANNNNTTC	2 cut(s)	590, 1084
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.