Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Forward (+)

36957022 .. 36959513

Gene Structure 2492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1238400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTTCCAACACCAACACCACAAGAAGCCATCAACTATGAATTCCCATGACAGACCCATGTGTGTCCAAGGGGACTCTGGCCTTGTCCTCACCACCGACCCTAAGCCTCGTCTGCGATGGACCGTCGAGCTCCATGAACGCTTTGTCGATGCTGTCACTCAGCTAGGAGGACCAGACAAGGCTACACCTAAAACTATCATGAGGGTTATGGGTGTGAAGGGTCTTACACTTTACCACCTCAAGAGCCACCTCCAGAAATTTAGGCTTGGAAAGCAACCTCACAAGGAATTCAATGACCACTCAATCAAGGATCATGCATCTCCACTGGATCTCCAACGAAATAGTGCATCTTCTTCTGCCATAATAGGCCGCAGTATGAATGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAATTGGAGGTCCAAAAACACCTTCAATTGAGAATTGAGGCTCAGGGAAAGTACATGCAAAGCATATTAGAGAAGGCCTGCCAAACCCTTGCTGGTGAGAACAATATGGCAGCTGCTGCAGGAAGTTACAAGGGTAATATTGCAAACCAAAGTGTTAACCCTACTGACATGGGATCTTTGAAAGATTTCAATTCTCCTCTCAACTTTCCATCTTTTCAAGACCTTAACATCTATGGAGGAGATCACCTTGATCTTCAACAAAACTTGGACAGGCCACCTCTTGATCATTGTTTCATGCCGAATAACGATAACAACATTTGCTTGGGACCAAAGAAAAGGCCTAGCCCTTATAGTGGTAGCGGCAAGAGCCCTTTGATTTGGTCTGATGATCTCCGGCTTCAAGACTTGGGAACAGCCGCATCATGTCTTGGACCTCAGGATGATCCTTTCAAATCATCAGATTCAATTCAAATTGCTCCGCCATCTATCGAGAGAGGATCAGAGATCGATTCTATTTCAGACATTTACGAATCCAAGCCAATGCTCCAAGGGGATGACAAGAAGTTTGATTCGGCAAATAAACTTGAAAGGCCTTCGCCACGGAGAGCACCACTAGGCTCAGACAGGATGAACCCCATGATCAACACCGGCGTTCGACAAGGAAGAAATTCACCATTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

367

Amino Acids

40.85

Weight (kDa)

8.49

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	37 - 87	9.7e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	129 - 168	6.4e-22	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	370, 777, 834, 896
AclWI	GGATC	5 cut(s)	318, 336, 598, 854, 922
AcsI	RAATTY	4 cut(s)	40, 257, 287, 1084
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	770
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	3 cut(s)	130, 163, 530
AluI	AGCT	3 cut(s)	130, 163, 530
Alw21I	GWGCWC	2 cut(s)	132, 1027
AlwI	GGATC	5 cut(s)	318, 336, 598, 854, 922
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	6 cut(s)	79, 367, 492, 689, 755, 1007
ApeKI	GCWGC	3 cut(s)	527, 530, 533
ApoI	RAATTY	4 cut(s)	40, 257, 287, 1084
ArsI	GACNNNNNNTTYG	2 cut(s)	965, 997
Asp700I	GAANNNNTTC	2 cut(s)	602, 1084
AspS9I	GGNCC	5 cut(s)	120, 170, 427, 743, 848
AsuHPI	GGTGA	4 cut(s)	82, 524, 653, 1080
AvaII	GGWCC	5 cut(s)	120, 170, 427, 743, 848
AxyI	CCTNAGG	1 cut(s)	852
BanII	GRGCYC	2 cut(s)	132, 788
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	2 cut(s)	132, 1027
BbvI	GCAGC	3 cut(s)	517, 520, 539
BccI	CCATC	4 cut(s)	37, 111, 634, 907
BclI	TGATCA	2 cut(s)	700, 1056
BfaI	CTAG	3 cut(s)	164, 759, 1031
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	6 cut(s)	370, 528, 531, 534, 778, 834
BlsI	GCNGC	6 cut(s)	371, 529, 532, 535, 779, 835
Bme18I	GGWCC	5 cut(s)	120, 170, 427, 743, 848
BmgT120I	GGNCC	5 cut(s)	120, 170, 427, 743, 848
BmiI	GGNNCC	1 cut(s)	744
BmsI	GCATC	5 cut(s)	139, 326, 356, 375, 845
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	2 cut(s)	102, 459
BpuEI	CTTGAG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	924
BsaJI	CCNNGG	3 cut(s)	67, 964, 1016
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
Bse118I	RCCGGY	1 cut(s)	1064
Bse1I	ACTGG	1 cut(s)	330
Bse21I	CCTNAGG	1 cut(s)	852
BseCI	ATCGAT	1 cut(s)	924
BseDI	CCNNGG	3 cut(s)	67, 964, 1016
BseGI	GGATG	3 cut(s)	862, 976, 1050
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseMII	CTCAG	4 cut(s)	173, 473, 866, 1050
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	2 cut(s)	603, 669
BseXI	GCAGC	3 cut(s)	517, 520, 539
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	6 cut(s)	81, 369, 494, 691, 757, 1009
BshVI	ATCGAT	1 cut(s)	924
BsiHKAI	GWGCWC	2 cut(s)	132, 1027
BsiSI	CCGG	2 cut(s)	811, 1065
BslFI	GGGAC	2 cut(s)	86, 756
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmFI	GGGAC	2 cut(s)	86, 756
BsnI	GGCC	6 cut(s)	81, 369, 494, 691, 757, 1009
Bsp1286I	GDGCHC	3 cut(s)	132, 788, 1027
BspACI	CCGC	4 cut(s)	370, 777, 834, 896
BspANI	GGCC	6 cut(s)	81, 369, 494, 691, 757, 1009
BspCNI	CTCAG	4 cut(s)	172, 472, 865, 1049
BspDI	ATCGAT	1 cut(s)	924
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	744
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	5 cut(s)	318, 336, 598, 854, 922
BsrFI	RCCGGY	1 cut(s)	1064
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	1064
BssECI	CCNNGG	3 cut(s)	67, 964, 1016
BssT1I	CCWWGG	2 cut(s)	67, 964
Bst4CI	ACNGT	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	5 cut(s)	102, 159, 459, 852, 1036
BstDSI	CCRYGG	1 cut(s)	1016
BstF5I	GGATG	3 cut(s)	862, 976, 1050
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 271, 533, 783
BstNSI	RCATGY	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	517, 520, 539
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	328, 590
BstYI	RGATCY	2 cut(s)	328, 590
Bsu15I	ATCGAT	1 cut(s)	924
Bsu36I	CCTNAGG	1 cut(s)	852
BsuRI	GGCC	6 cut(s)	81, 369, 494, 691, 757, 1009
BsuTUI	ATCGAT	1 cut(s)	924
BtgI	CCRYGG	1 cut(s)	1016
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	862, 976, 1050
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	496
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	1064
Cfr13I	GGNCC	5 cut(s)	120, 170, 427, 743, 848
ClaI	ATCGAT	1 cut(s)	924
Csp6I	GTAC	1 cut(s)	469
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	5 cut(s)	102, 159, 459, 852, 1036
EciI	GGCGGA	1 cut(s)	885
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	67, 964
Eco147I	AGGCCT	3 cut(s)	494, 757, 1009
Eco24I	GRGCYC	2 cut(s)	132, 788
Eco47I	GGWCC	5 cut(s)	120, 170, 427, 743, 848
Eco53kI	GAGCTC	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	852
EcoICRI	GAGCTC	1 cut(s)	130
EcoRI	GAATTC	2 cut(s)	40, 287
EcoT14I	CCWWGG	2 cut(s)	67, 964
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	132, 788
ErhI	CCWWGG	2 cut(s)	67, 964
FaqI	GGGAC	2 cut(s)	86, 756
FbaI	TGATCA	2 cut(s)	700, 1056
Fnu4HI	GCNGC	6 cut(s)	370, 528, 531, 534, 778, 834
FokI	GGATG	3 cut(s)	869, 983, 1057
FriOI	GRGCYC	2 cut(s)	132, 788
Fsp4HI	GCNGC	6 cut(s)	370, 528, 531, 534, 778, 834
FspBI	CTAG	3 cut(s)	164, 759, 1031
GluI	GCNGC	6 cut(s)	370, 528, 531, 534, 778, 834
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	6 cut(s)	81, 369, 494, 691, 757, 1009
HapII	CCGG	2 cut(s)	811, 1065
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	5 cut(s)	74, 878, 926, 947, 986
HpaI	GTTAAC	1 cut(s)	574
HpaII	CCGG	2 cut(s)	811, 1065
HphI	GGTGA	4 cut(s)	82, 524, 653, 1080
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	5 cut(s)	802, 877, 919, 937, 1039
Hpy188III	TCNNGA	8 cut(s)	199, 241, 253, 635, 698, 818, 854, 907
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	4 cut(s)	211, 449, 484, 1020
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	8 cut(s)	317, 347, 388, 400, 412, 475, 536, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 271, 533, 783
HpyF3I	CTNAG	5 cut(s)	102, 159, 459, 852, 1036
Ksp22I	TGATCA	2 cut(s)	700, 1056
KspAI	GTTAAC	1 cut(s)	574
LmnI	GCTCC	3 cut(s)	135, 898, 966
Lsp1109I	GCAGC	3 cut(s)	517, 520, 539
LweI	GCATC	5 cut(s)	139, 326, 356, 375, 845
MaeI	CTAG	3 cut(s)	164, 759, 1031
MaeIII	GTNAC	2 cut(s)	154, 542
MboII	GAAGA	5 cut(s)	342, 345, 417, 662, 1092
MfeI	CAATTG	2 cut(s)	419, 443
MflI	RGATCY	2 cut(s)	328, 590
MhlI	GDGCHC	3 cut(s)	132, 788, 1027
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	31, 358
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	2 cut(s)	602, 1084
MseI	TTAA	2 cut(s)	573, 642
MslI	CAYNNNNRTG	1 cut(s)	1096
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	811, 1065
MunI	CAATTG	2 cut(s)	419, 443
MwoI	GCNNNNNNNGC	4 cut(s)	112, 271, 533, 783
NlaIV	GGNNCC	1 cut(s)	744
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	475
PagI	TCATGA	1 cut(s)	198
PceI	AGGCCT	3 cut(s)	494, 757, 1009
PdmI	GAANNNNTTC	2 cut(s)	602, 1084
PfeI	GAWTC	4 cut(s)	878, 926, 947, 986
PkrI	GCNGC	6 cut(s)	371, 529, 532, 535, 779, 835
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	5 cut(s)	120, 170, 427, 743, 848
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	328, 590
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	1096
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	573, 642
SatI	GCNGC	6 cut(s)	370, 528, 531, 534, 778, 834
Sau96I	GGNCC	5 cut(s)	120, 170, 427, 743, 848
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	3 cut(s)	132, 788, 1027
SfaNI	GCATC	5 cut(s)	139, 326, 356, 375, 845
SfcI	CTRYAG	1 cut(s)	534
SgrAI	CRCCGGYG	1 cut(s)	1064
SinI	GGWCC	5 cut(s)	120, 170, 427, 743, 848
SmiMI	CAYNNNNRTG	1 cut(s)	1096
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SseBI	AGGCCT	3 cut(s)	494, 757, 1009
SsiI	CCGC	4 cut(s)	370, 777, 834, 896
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	3 cut(s)	164, 759, 1031
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	3 cut(s)	494, 757, 1009
StyI	CCWWGG	2 cut(s)	67, 964
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	5 cut(s)	126, 147, 906, 924, 1072
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	3 cut(s)	372, 780, 836
TfiI	GAWTC	4 cut(s)	878, 926, 947, 986
Tru1I	TTAA	2 cut(s)	573, 642
Tru9I	TTAA	2 cut(s)	573, 642
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	527, 530, 533
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	6 cut(s)	53, 150, 392, 429, 700, 1061
TspGWI	ACGGA	1 cut(s)	1033
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	5 cut(s)	120, 170, 427, 743, 848
XapI	RAATTY	4 cut(s)	40, 257, 287, 1084
XceI	RCATGY	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	2 cut(s)	74, 506
XmnI	GAANNNNTTC	2 cut(s)	602, 1084
XspI	CTAG	3 cut(s)	164, 759, 1031
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.