Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Reverse (-)

17224440 .. 17227072

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG164800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGATCTTCATTAAAATCAACTGTTTTATGAAATTTTCAGAGGCTACACCTAAGACTATCATGAGGGTTATGGGTGTGAAGGGTCTCACACTTTACCACCTCAAGAGCCACCTCCAGAAATTTAGGCTAGGAAAGCAACCTCACAAGGAATTCAATGATCACTCGATTAAAGATCATGCATCTTCACTTGATCTCCAAAGAAATAGTGCATCTTCATCTGGGATAATAGGCCGCAGTATGAACGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAATTGGAGGTCCAAAAACATCTTCAGTTGAGAATCGAAGCTCAAGGAAAGTACATGCAAAGCATACTAGAGAAAGCCTGCCAAACCCTTGCTGGTGAAAACAACATGGCAGCTGCAGCTGGAAGCTACAAGGGTAATATTGGAAATAACCAAGGTGTTAATCATGCTGACATGGGAAACCTAAAGGATTTCAATTCTCCTCTCAACTTTCCATCATTTCAAGACCTGAACATATATGGATCTGGCGATCACCTTGATCAACTTCAACAGAACAGCTTGGACAGGCCACCTCTTGATCATCACAGTTTTATGCCAAACAATGATAACATTAATTGCATGGGATCAAAGAAGAGGCCAAGTCCGTATAACAGTGGTAACAGTAGTGGCAAGAGCCCGTTGATTTGGTCTGATGATTTAAGACTTCAAGACTTGGGAACTGCCGCATCATGTCTTGGACCTCAGGATGATCATCAGATTCAGATTGCACCACCATCCATTGAAAGAGGCACTGATCAGATCGAGTCGATTTCAGATATTTATGAATCGAAGCCGATGATTCAAGGGGACGAGAAGAAGTTTGAAGCGGGAAATAAGCTCGAGAGGCCTTCACCACGGAGAGCACCAATGGGATCAGAAAGGATGAACCCCATGATCAACGCTGGTGTGAGACAAGGAAGAAATTCGCCATTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

324

Amino Acids

36.2

Weight (kDa)

8.57

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	83 - 122	5.4e-22	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	232, 720, 863
AclWI	GGATC	3 cut(s)	526, 628, 916
AcsI	RAATTY	4 cut(s)	32, 119, 149, 958
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	332
AgsI	TTSAA	8 cut(s)	154, 472, 500, 545, 704, 779, 839, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	6 cut(s)	320, 392, 398, 405, 555, 874
AluI	AGCT	6 cut(s)	320, 392, 398, 405, 555, 874
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	2 cut(s)	89, 940
AlwI	GGATC	3 cut(s)	526, 628, 916
Ama87I	CYCGRG	1 cut(s)	875
AoxI	GGCC	4 cut(s)	229, 563, 632, 881
ApeKI	GCWGC	3 cut(s)	389, 392, 395
ApoI	RAATTY	4 cut(s)	32, 119, 149, 958
AseI	ATTAAT	1 cut(s)	609
Asp700I	GAANNNNTTC	1 cut(s)	958
AspS9I	GGNCC	2 cut(s)	289, 734
AsuHPI	GGTGA	3 cut(s)	386, 521, 879
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	2 cut(s)	289, 734
AxyI	CCTNAGG	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	3 cut(s)	379, 401, 407
BccI	CCATC	2 cut(s)	499, 778
BclI	TGATCA	6 cut(s)	157, 535, 574, 745, 790, 930
BcoDI	GTCTC	2 cut(s)	89, 940
BfaI	CTAG	2 cut(s)	128, 347
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	5 cut(s)	232, 390, 393, 396, 720
BlsI	GCNGC	5 cut(s)	233, 391, 394, 397, 721
Bme18I	GGWCC	2 cut(s)	289, 734
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	2 cut(s)	289, 734
BmsI	GCATC	4 cut(s)	188, 218, 237, 731
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	86, 306
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	430, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse21I	CCTNAGG	1 cut(s)	738
Bse8I	GATNNNNATC	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	430, 890
BseGI	GGATG	3 cut(s)	748, 770, 924
BseJI	GATNNNNATC	1 cut(s)	747
BseMII	CTCAG	1 cut(s)	752
BseRI	GAGGAG	1 cut(s)	468
BseXI	GCAGC	3 cut(s)	379, 401, 407
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	4 cut(s)	231, 565, 634, 883
BsiHKAI	GWGCWC	1 cut(s)	901
BsiHKCI	CYCGRG	1 cut(s)	875
BslFI	GGGAC	1 cut(s)	857
BsmAI	GTCTC	2 cut(s)	89, 940
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	4 cut(s)	231, 565, 634, 883
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	2 cut(s)	674, 901
BspACI	CCGC	3 cut(s)	232, 720, 863
BspANI	GGCC	4 cut(s)	231, 565, 634, 883
BspCNI	CTCAG	1 cut(s)	751
BspHI	TCATGA	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	3 cut(s)	526, 628, 916
BspTNI	GGTCTC	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	430, 890
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	4 cut(s)	23, 584, 650, 659
Bst6I	CTCTTC	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	51, 738
BstDSI	CCRYGG	1 cut(s)	890
BstF5I	GGATG	3 cut(s)	748, 770, 924
BstMAI	GTCTC	2 cut(s)	89, 940
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 395, 880
BstNSI	RCATGY	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	379, 401, 407
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	4 cut(s)	231, 565, 634, 883
BtgI	CCRYGG	1 cut(s)	890
BtsCI	GGATG	3 cut(s)	748, 770, 924
BtsIMutI	CAGTG	2 cut(s)	655, 786
Cac8I	GCNNGC	1 cut(s)	358
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	289, 734
Csp6I	GTAC	1 cut(s)	331
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	51, 738
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	883
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	289, 734
Eco57I	CTGAAG	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	875
EcoRI	GAATTC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	430
FaqI	GGGAC	1 cut(s)	857
FauI	CCCGC	1 cut(s)	856
FbaI	TGATCA	6 cut(s)	157, 535, 574, 745, 790, 930
Fnu4HI	GCNGC	5 cut(s)	232, 390, 393, 396, 720
FokI	GGATG	3 cut(s)	755, 757, 931
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	5 cut(s)	232, 390, 393, 396, 720
FspBI	CTAG	2 cut(s)	128, 347
GluI	GCNGC	5 cut(s)	232, 390, 393, 396, 720
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	4 cut(s)	231, 565, 634, 883
HinfI	GANTC	5 cut(s)	312, 754, 800, 821, 835
HphI	GGTGA	3 cut(s)	386, 521, 879
Hpy188I	TCNGA	7 cut(s)	40, 688, 753, 759, 795, 811, 913
Hpy188III	TCNNGA	8 cut(s)	61, 103, 115, 500, 572, 704, 740, 877
HpyAV	CCTTC	2 cut(s)	73, 894
HpyCH4III	ACNGT	4 cut(s)	23, 584, 650, 659
HpyCH4V	TGCA	9 cut(s)	179, 209, 250, 262, 274, 337, 395, 615, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 395, 880
HpyF3I	CTNAG	2 cut(s)	51, 738
Ksp22I	TGATCA	6 cut(s)	157, 535, 574, 745, 790, 930
Lsp1109I	GCAGC	3 cut(s)	379, 401, 407
LweI	GCATC	4 cut(s)	188, 218, 237, 731
MaeI	CTAG	2 cut(s)	128, 347
MaeIII	GTNAC	1 cut(s)	653
MboII	GAAGA	7 cut(s)	174, 204, 279, 293, 640, 862, 966
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	674, 901
MluCI	AATT	7 cut(s)	32, 119, 149, 281, 472, 610, 958
MlyI	GAGTC	1 cut(s)	809
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	958
MseI	TTAA	5 cut(s)	12, 168, 438, 609, 695
MslI	CAYNNNNRTG	1 cut(s)	970
MspA1I	CMGCKG	2 cut(s)	392, 398
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	133, 395, 880
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	875
PagI	TCATGA	1 cut(s)	60
PceI	AGGCCT	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	958
PfeI	GAWTC	4 cut(s)	312, 754, 821, 835
PkrI	GCNGC	5 cut(s)	233, 391, 394, 397, 721
PleI	GAGTC	1 cut(s)	808
PpsI	GAGTC	1 cut(s)	808
PshBI	ATTAAT	1 cut(s)	609
PspPI	GGNCC	2 cut(s)	289, 734
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	518
PvuII	CAGCTG	2 cut(s)	392, 398
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	970
SaqAI	TTAA	5 cut(s)	12, 168, 438, 609, 695
SatI	GCNGC	5 cut(s)	232, 390, 393, 396, 720
Sau96I	GGNCC	2 cut(s)	289, 734
SchI	GAGTC	1 cut(s)	809
SduI	GDGCHC	2 cut(s)	674, 901
SfaNI	GCATC	4 cut(s)	188, 218, 237, 731
SfcI	CTRYAG	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	875
SinI	GGWCC	2 cut(s)	289, 734
SlaI	CTCGAG	1 cut(s)	875
SmiMI	CAYNNNNRTG	1 cut(s)	970
SmlI	CTYRAG	3 cut(s)	101, 321, 875
SmoI	CTYRAG	3 cut(s)	101, 321, 875
Sse9I	AATT	7 cut(s)	32, 119, 149, 281, 472, 610, 958
SseBI	AGGCCT	1 cut(s)	883
SsiI	CCGC	3 cut(s)	232, 720, 863
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	2 cut(s)	128, 347
StuI	AGGCCT	1 cut(s)	883
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	23, 584, 650, 659
TaqI	TCGA	6 cut(s)	164, 315, 798, 803, 824, 876
TasI	AATT	7 cut(s)	32, 119, 149, 281, 472, 610, 958
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	2 cut(s)	234, 722
TfiI	GAWTC	4 cut(s)	312, 754, 821, 835
Tru1I	TTAA	5 cut(s)	12, 168, 438, 609, 695
Tru9I	TTAA	5 cut(s)	12, 168, 438, 609, 695
TscAI	CASTG	2 cut(s)	655, 793
TseI	GCWGC	3 cut(s)	389, 392, 395
TspDTI	ATGAA	6 cut(s)	44, 204, 254, 291, 834, 935
TspGWI	ACGGA	2 cut(s)	630, 907
TspRI	CASTG	2 cut(s)	655, 793
VpaK11BI	GGWCC	2 cut(s)	289, 734
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	4 cut(s)	32, 119, 149, 958
XceI	RCATGY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	875
XmnI	GAANNNNTTC	1 cut(s)	958
XspI	CTAG	2 cut(s)	128, 347
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.