Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Reverse (-)

7034179 .. 7036620

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G128000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTTCCAACACCCACACCAACACCACAAGAAGCCATCAACTATGAATTCTCATGACAGACCCATGTGTGTCCAAGGGGACTCTGGTCTTGTCCTCACCACTGACCCTAAGCCCCGCCTCCGATGGACCGTTGAGCTCCATGAACGTTTTGTTGATGCTGTCACTCAGCTTGGAGGACCAGACAAAGCTACACCCAAGACTATCATGAGGGTTATGGGTGTGAAGGGTCTTACACTTTACCACCTCAAGAGCCACCTCCAGAAATTTAGGCTCGGAAAGCAACCTCACAAGGAATTCAATGATCACTCGCTTAAGGATCATGCATCTCCCCTGGATCTTCAACGAAATAGTGCATCTTCTTCTGCCATGATCGGCCGCAGTATGAATGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAATTGGAGGTCCAGAAACACCTGCAGTTGAGAATTGAGGCTCAGGGAAAGTACATGCAAAGCATATTAGAAAAGGCCTGTCAAACCCTTGCTGGTGAGAACAACATGGCAGCTGCAGCAGGAAGCTACAAGGGTAATATTGGAAATCAAGGTGTCAATCCTGCTGACATGGGAGCTCTGAAAGATTTCAACTCTCCTCTCAATTTTCCATCATTTCAAGACCTTAACATATATGGAGGAGACCACCTTGATCTTCAACAGAACTTGGACAGGCCACCTCTTGATCACAGTTTCATGCCAAGCAATGACAATAGCATTTGCTTGGGACCCAAGAAGAGGCCTAGTCCTTATAGTGGTAGTGGCAAGAGCCCTTTGATTTGGTCTGATGATCTCCGGCTTCAAGATTTGGGAACAGCTGCCTCATGTCTTGGACCTCAGGATGATCCCTTCAAATCGTCAGATTCAATTCAGATTGCACCACCGTCCATTGAGAGAGGCTCGGAGATGGATTCCATTTCGGACATCTACGAATCCAAGCCAATGATCCAAGGAGAAGACAAGAAGTTTGACTCGGCAAATAAACTGGAAAGGCCTTCACCACGGCGAACACCACTAGGCTCCGACAGGATGAACCCCATGATCAACACCGGTGTTCGACAAGGAAGAAATTCACCTTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

369

Amino Acids

41.01

Weight (kDa)

8.55

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	453
AciI	CCGC	2 cut(s)	115, 376
AclI	AACGTT	1 cut(s)	145
AclWI	GGATC	4 cut(s)	324, 342, 860, 961
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	4 cut(s)	46, 263, 293, 1090
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	759, 776
AflII	CTTAAG	1 cut(s)	311
AgeI	ACCGGT	1 cut(s)	1070
AgsI	TTSAA	8 cut(s)	298, 341, 613, 641, 680, 824, 874, 888
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	7 cut(s)	136, 169, 188, 536, 549, 599, 839
AluI	AGCT	7 cut(s)	136, 169, 188, 536, 549, 599, 839
Alw21I	GWGCWC	2 cut(s)	138, 601
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	4 cut(s)	324, 342, 860, 961
AoxI	GGCC	5 cut(s)	373, 498, 695, 761, 1013
ApeKI	GCWGC	4 cut(s)	533, 536, 539, 839
ApoI	RAATTY	4 cut(s)	46, 263, 293, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	971, 1003
AsiGI	ACCGGT	1 cut(s)	1070
Asp700I	GAANNNNTTC	2 cut(s)	608, 1090
AspS9I	GGNCC	5 cut(s)	126, 176, 433, 749, 854
AsuHPI	GGTGA	4 cut(s)	88, 530, 1011, 1086
AvaII	GGWCC	5 cut(s)	126, 176, 433, 749, 854
AxyI	CCTNAGG	1 cut(s)	858
BanII	GRGCYC	3 cut(s)	138, 601, 794
BbsI	GAAGAC	2 cut(s)	418, 984
Bbv12I	GWGCWC	2 cut(s)	138, 601
BbvI	GCAGC	4 cut(s)	523, 545, 551, 826
BccI	CCATC	4 cut(s)	43, 117, 640, 922
BceAI	ACGGC	1 cut(s)	1040
BciT130I	CCWGG	1 cut(s)	332
BclI	TGATCA	3 cut(s)	301, 706, 1062
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	2 cut(s)	765, 1037
BfmI	CTRYAG	2 cut(s)	446, 537
BfrI	CTTAAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	453
BisI	GCNGC	5 cut(s)	376, 534, 537, 540, 840
BlsI	GCNGC	5 cut(s)	377, 535, 538, 541, 841
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	5 cut(s)	126, 176, 433, 749, 854
BmgT120I	GGNCC	5 cut(s)	126, 176, 433, 749, 854
BmiI	GGNNCC	3 cut(s)	750, 751, 1042
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	4 cut(s)	145, 332, 362, 381
BoxI	GACNNNNGTC	1 cut(s)	84
BpiI	GAAGAC	2 cut(s)	418, 984
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	108, 465
BpuEI	CTTGAG	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	657
BsaJI	CCNNGG	4 cut(s)	73, 330, 970, 1022
BsaWI	WCCGGW	1 cut(s)	1070
Bsc4I	CCNNNNNNNGG	2 cut(s)	759, 776
Bse118I	RCCGGY	1 cut(s)	1070
Bse1I	ACTGG	1 cut(s)	1011
Bse21I	CCTNAGG	1 cut(s)	858
Bse3DI	GCAATG	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	4 cut(s)	73, 330, 970, 1022
BseGI	GGATG	2 cut(s)	868, 1056
BseLI	CCNNNNNNNGG	2 cut(s)	759, 776
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	179, 479, 872
BseNI	ACTGG	1 cut(s)	1011
BseRI	GAGGAG	2 cut(s)	609, 675
BseX3I	CGGCCG	1 cut(s)	373
BseXI	GCAGC	4 cut(s)	523, 545, 551, 826
BsgI	GTGCAG	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	5 cut(s)	375, 500, 697, 763, 1015
BshTI	ACCGGT	1 cut(s)	1070
BsiEI	CGRYCG	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	138, 601
BsiSI	CCGG	2 cut(s)	817, 1071
BslFI	GGGAC	2 cut(s)	92, 762
BslI	CCNNNNNNNGG	2 cut(s)	759, 776
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	2 cut(s)	92, 762
BsnI	GGCC	5 cut(s)	375, 500, 697, 763, 1015
Bso31I	GGTCTC	1 cut(s)	657
Bsp1286I	GDGCHC	3 cut(s)	138, 601, 794
BspACI	CCGC	2 cut(s)	115, 376
BspANI	GGCC	5 cut(s)	375, 500, 697, 763, 1015
BspCNI	CTCAG	3 cut(s)	178, 478, 871
BspHI	TCATGA	2 cut(s)	52, 204
BspLI	GGNNCC	3 cut(s)	750, 751, 1042
BspMAI	CTGCAG	2 cut(s)	450, 541
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	4 cut(s)	324, 342, 860, 961
BspTI	CTTAAG	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	1070
BsrI	ACTGG	1 cut(s)	1011
BssAI	RCCGGY	1 cut(s)	1070
BssECI	CCNNGG	4 cut(s)	73, 330, 970, 1022
BssT1I	CCWWGG	2 cut(s)	73, 970
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	130, 713, 906
Bst6I	CTCTTC	1 cut(s)	752
BstAFI	CTTAAG	1 cut(s)	311
BstDEI	CTNAG	4 cut(s)	108, 165, 465, 858
BstDSI	CCRYGG	1 cut(s)	1022
BstF5I	GGATG	2 cut(s)	868, 1056
BstMAI	GTCTC	1 cut(s)	657
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 539
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	481
BstPAI	GACNNNNGTC	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	2 cut(s)	446, 537
BstV1I	GCAGC	4 cut(s)	523, 545, 551, 826
BstV2I	GAAGAC	2 cut(s)	418, 984
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BstZI	CGGCCG	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	858
BsuRI	GGCC	5 cut(s)	375, 500, 697, 763, 1015
BtgI	CCRYGG	1 cut(s)	1022
BtsCI	GGATG	2 cut(s)	868, 1056
BtsIMutI	CAGTG	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	453
CciI	TCATGA	2 cut(s)	52, 204
Cfr10I	RCCGGY	1 cut(s)	1070
Cfr13I	GGNCC	5 cut(s)	126, 176, 433, 749, 854
Csp6I	GTAC	1 cut(s)	475
CspAI	ACCGGT	1 cut(s)	1070
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	4 cut(s)	108, 165, 465, 858
EaeI	YGGCCR	1 cut(s)	373
EagI	CGGCCG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Ecl136II	GAGCTC	2 cut(s)	136, 599
EclXI	CGGCCG	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	73, 970
Eco147I	AGGCCT	3 cut(s)	500, 763, 1015
Eco24I	GRGCYC	3 cut(s)	138, 601, 794
Eco31I	GGTCTC	1 cut(s)	657
Eco47I	GGWCC	5 cut(s)	126, 176, 433, 749, 854
Eco52I	CGGCCG	1 cut(s)	373
Eco53kI	GAGCTC	2 cut(s)	136, 599
Eco81I	CCTNAGG	1 cut(s)	858
EcoICRI	GAGCTC	2 cut(s)	136, 599
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	2 cut(s)	46, 293
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	73, 970
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	3 cut(s)	138, 601, 794
ErhI	CCWWGG	2 cut(s)	73, 970
FaqI	GGGAC	2 cut(s)	92, 762
FauI	CCCGC	1 cut(s)	122
FbaI	TGATCA	3 cut(s)	301, 706, 1062
Fnu4HI	GCNGC	5 cut(s)	376, 534, 537, 540, 840
FokI	GGATG	2 cut(s)	875, 1063
FriOI	GRGCYC	3 cut(s)	138, 601, 794
Fsp4HI	GCNGC	5 cut(s)	376, 534, 537, 540, 840
FspBI	CTAG	2 cut(s)	765, 1037
GluI	GCNGC	5 cut(s)	376, 534, 537, 540, 840
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	5 cut(s)	375, 500, 697, 763, 1015
HapII	CCGG	2 cut(s)	817, 1071
HinfI	GANTC	5 cut(s)	80, 884, 932, 953, 992
HpaII	CCGG	2 cut(s)	817, 1071
HphI	GGTGA	4 cut(s)	88, 530, 1011, 1086
Hpy188I	TCNGA	9 cut(s)	122, 275, 603, 808, 883, 894, 925, 943, 1045
Hpy188III	TCNNGA	9 cut(s)	53, 205, 247, 259, 436, 641, 704, 824, 860
HpyAV	CCTTC	3 cut(s)	217, 880, 1026
HpyCH4III	ACNGT	3 cut(s)	130, 713, 906
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	9 cut(s)	323, 353, 394, 406, 418, 448, 481, 539, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 539
HpyF3I	CTNAG	4 cut(s)	108, 165, 465, 858
HpySE526I	ACGT	1 cut(s)	145
KflI	GGGWCCC	1 cut(s)	749
Ksp22I	TGATCA	3 cut(s)	301, 706, 1062
LmnI	GCTCC	3 cut(s)	141, 596, 1046
Lsp1109I	GCAGC	4 cut(s)	523, 545, 551, 826
LweI	GCATC	4 cut(s)	145, 332, 362, 381
MaeI	CTAG	2 cut(s)	765, 1037
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	160
MboII	GAAGA	8 cut(s)	329, 348, 351, 423, 668, 769, 989, 1098
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	3 cut(s)	138, 601, 794
MluCI	AATT	8 cut(s)	46, 263, 293, 425, 456, 625, 888, 1090
MlyI	GAGTC	2 cut(s)	74, 986
MmeI	TCCRAC	2 cut(s)	31, 1068
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	2 cut(s)	608, 1090
MseI	TTAA	2 cut(s)	312, 648
MspA1I	CMGCKG	2 cut(s)	536, 839
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	2 cut(s)	817, 1071
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	277, 539
NlaIV	GGNNCC	3 cut(s)	750, 751, 1042
NmeAIII	GCCGAG	1 cut(s)	974
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	481
PagI	TCATGA	2 cut(s)	52, 204
PaqCI	CACCTGC	1 cut(s)	453
PceI	AGGCCT	3 cut(s)	500, 763, 1015
PdmI	GAANNNNTTC	2 cut(s)	608, 1090
PfeI	GAWTC	3 cut(s)	884, 932, 953
PinAI	ACCGGT	1 cut(s)	1070
PkrI	GCNGC	5 cut(s)	377, 535, 538, 541, 841
PleI	GAGTC	2 cut(s)	74, 986
PpsI	GAGTC	2 cut(s)	74, 986
PpuMI	RGGWCCY	1 cut(s)	749
PshAI	GACNNNNGTC	1 cut(s)	84
Psp124BI	GAGCTC	2 cut(s)	138, 601
Psp1406I	AACGTT	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	3 cut(s)	750, 751, 1042
PspPI	GGNCC	5 cut(s)	126, 176, 433, 749, 854
PspPPI	RGGWCCY	1 cut(s)	749
PstI	CTGCAG	2 cut(s)	450, 541
PsuI	RGATCY	1 cut(s)	334
PvuII	CAGCTG	2 cut(s)	536, 839
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	2 cut(s)	138, 601
SaqAI	TTAA	2 cut(s)	312, 648
SatI	GCNGC	5 cut(s)	376, 534, 537, 540, 840
Sau96I	GGNCC	5 cut(s)	126, 176, 433, 749, 854
SchI	GAGTC	2 cut(s)	74, 986
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	3 cut(s)	138, 601, 794
SfaNI	GCATC	4 cut(s)	145, 332, 362, 381
SfcI	CTRYAG	2 cut(s)	446, 537
SgrAI	CRCCGGYG	1 cut(s)	1070
SinI	GGWCC	5 cut(s)	126, 176, 433, 749, 854
SmlI	CTYRAG	2 cut(s)	245, 311
SmoI	CTYRAG	2 cut(s)	245, 311
Sse9I	AATT	8 cut(s)	46, 263, 293, 425, 456, 625, 888, 1090
SseBI	AGGCCT	3 cut(s)	500, 763, 1015
SsiI	CCGC	2 cut(s)	115, 376
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	2 cut(s)	765, 1037
SstI	GAGCTC	2 cut(s)	138, 601
StuI	AGGCCT	3 cut(s)	500, 763, 1015
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	2 cut(s)	73, 970
TaaI	ACNGT	3 cut(s)	130, 713, 906
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	1078
TasI	AATT	8 cut(s)	46, 263, 293, 425, 456, 625, 888, 1090
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	3 cut(s)	884, 932, 953
Tru1I	TTAA	2 cut(s)	312, 648
Tru9I	TTAA	2 cut(s)	312, 648
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	533, 536, 539, 839
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	6 cut(s)	59, 156, 398, 435, 706, 1067
TspRI	CASTG	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	5 cut(s)	126, 176, 433, 749, 854
XapI	RAATTY	4 cut(s)	46, 263, 293, 1090
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmnI	GAANNNNTTC	2 cut(s)	608, 1090
XspI	CTAG	2 cut(s)	765, 1037
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.