Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Reverse (-)

17575447 .. 17578080

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG179700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTTCCAACAGCACAAGAAGCCATCAAGTATGAATTCTCATGAGAGCCACAGACCCATGTGCGTCCAAGGGGACTCTGGCCTTGTCCTCACCACTGACCCTAAGCCTCGTCTCCGGTGGACTGTCGAGCTTCATGAACGATTCGTGGATGCTGTGACTCAACTCGGAGGACCAGACAAGGCTACACCTAAGACTATCATGAGGGTTATGGGTGTGAAGGGTCTCACACTTTACCACCTCAAGAGCCACCTCCAGAAATTTAGGCTAGGAAAGCAACCTCACAAGGAATTCAATGATCACTCGATTAAAGATCATGCATCTTCACTTGATCTCCAAAGAAATAGTGCATCTTCATCTGGGATAATAGGCCGCAGTATGAACGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAATTGGAGGTCCAAAAACATCTTCAGTTGAGAATCGAAGCTCAAGGAAAGTACATGCAAAGCATACTAGAGAAAGCCTGCCAAACCCTTGCTGGTGAAAACAACATGGCAGCTGCAGCTGGAAGCTACAAGGGTAATATTGGAAATAACCAAGGTGTTAATCATGCTGACATGGGAAACCTAAAGGATTTCAATTCTCCTCTCAACTTTCAATCATTTCAAGACCTGAACATATATGGATCTGGCGATCACCTTGATCAACTTCAACAGAACAGCTTGGACAGGCCACCTCTTGATCATCACAGTTTTATGCCAAACAATGATAACATTAATTGCATGGGATCAAAGAAGAGGCCAAGTCCGTATAACAGTGGTAACAGTAGTGGCAAGAGCCCGTTGATTTGGTCTGATGATTTAAGACTTCAAGACTTGGGAACTGCCGCATCATGTCTTGGACCTCAGGATGATCATCAGATTCAGATTGCACCACCATCCATTGAAAGAGGCACCGATCAGATCGAGTCGATTTCAGATATTTATGAATCGAAGCCGATGATTCAAGGGGACGAGAAGAAGTTTGAAGCGGGAAATAAGCTCGAGAGGCCTTCACCACGAAGAGCACCAATGGGATCAGAAAGGATGAACCCCATGATCAACGCTGGTGTGAGACAAGGAAGAAATTCGCCATTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

370

Amino Acids

41.32

Weight (kDa)

8.56

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	37 - 87	9.8e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	129 - 168	6.4e-22	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	923
AciI	CCGC	3 cut(s)	370, 858, 1001
AclWI	GGATC	3 cut(s)	664, 766, 1054
AcsI	RAATTY	4 cut(s)	34, 257, 287, 1096
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	470
AgsI	TTSAA	9 cut(s)	292, 610, 629, 638, 683, 842, 917, 977, 998
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	7 cut(s)	130, 458, 530, 536, 543, 693, 1012
AluI	AGCT	7 cut(s)	130, 458, 530, 536, 543, 693, 1012
Alw21I	GWGCWC	1 cut(s)	1039
Alw26I	GTCTC	3 cut(s)	116, 227, 1078
AlwI	GGATC	3 cut(s)	664, 766, 1054
Ama87I	CYCGRG	1 cut(s)	1013
AoxI	GGCC	5 cut(s)	79, 367, 701, 770, 1019
ApeKI	GCWGC	3 cut(s)	527, 530, 533
ApoI	RAATTY	4 cut(s)	34, 257, 287, 1096
AseI	ATTAAT	1 cut(s)	747
Asp700I	GAANNNNTTC	1 cut(s)	1096
AspS9I	GGNCC	3 cut(s)	170, 427, 872
AsuHPI	GGTGA	4 cut(s)	82, 524, 659, 1017
AvaI	CYCGRG	1 cut(s)	1013
AvaII	GGWCC	3 cut(s)	170, 427, 872
AxyI	CCTNAGG	1 cut(s)	876
BanI	GGYRCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	812
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	1039
BbvI	GCAGC	3 cut(s)	517, 539, 545
BccI	CCATC	2 cut(s)	31, 916
BclI	TGATCA	5 cut(s)	295, 673, 712, 883, 1068
BcoDI	GTCTC	3 cut(s)	116, 227, 1078
BfaI	CTAG	2 cut(s)	266, 485
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	5 cut(s)	370, 528, 531, 534, 858
BlsI	GCNGC	5 cut(s)	371, 529, 532, 535, 859
Bme18I	GGWCC	3 cut(s)	170, 427, 872
BmeT110I	CYCGRG	1 cut(s)	1013
BmgT120I	GGNCC	3 cut(s)	170, 427, 872
BmiI	GGNNCC	1 cut(s)	925
BmsI	GCATC	5 cut(s)	139, 326, 356, 375, 869
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	224, 444
BsaBI	GATNNNNATC	1 cut(s)	885
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	67, 568
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse21I	CCTNAGG	1 cut(s)	876
Bse8I	GATNNNNATC	1 cut(s)	885
BseDI	CCNNGG	2 cut(s)	67, 568
BseGI	GGATG	4 cut(s)	154, 886, 908, 1062
BseJI	GATNNNNATC	1 cut(s)	885
BseMII	CTCAG	1 cut(s)	890
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	3 cut(s)	517, 539, 545
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	5 cut(s)	81, 369, 703, 772, 1021
BshNI	GGYRCC	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	1039
BsiHKCI	CYCGRG	1 cut(s)	1013
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	2 cut(s)	86, 995
BsmAI	GTCTC	3 cut(s)	116, 227, 1078
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	2 cut(s)	86, 995
BsnI	GGCC	5 cut(s)	81, 369, 703, 772, 1021
Bso31I	GGTCTC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	1013
Bsp1286I	GDGCHC	2 cut(s)	812, 1039
BspACI	CCGC	3 cut(s)	370, 858, 1001
BspANI	GGCC	5 cut(s)	81, 369, 703, 772, 1021
BspCNI	CTCAG	1 cut(s)	889
BspHI	TCATGA	3 cut(s)	40, 133, 198
BspLI	GGNNCC	1 cut(s)	925
BspMAI	CTGCAG	1 cut(s)	535
BspPI	GGATC	3 cut(s)	664, 766, 1054
BspQI	GCTCTTC	1 cut(s)	1027
BspT107I	GGYRCC	1 cut(s)	923
BspTNI	GGTCTC	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	67, 568
BssT1I	CCWWGG	2 cut(s)	67, 568
Bst4CI	ACNGT	4 cut(s)	124, 722, 788, 797
Bst6I	CTCTTC	2 cut(s)	761, 1027
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	102, 189, 876
BstF5I	GGATG	4 cut(s)	154, 886, 908, 1062
BstMAI	GTCTC	3 cut(s)	116, 227, 1078
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 271, 533, 1018
BstNSI	RCATGY	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	517, 539, 545
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	656
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	5 cut(s)	81, 369, 703, 772, 1021
BtsCI	GGATG	4 cut(s)	154, 886, 908, 1062
BtsIMutI	CAGTG	2 cut(s)	93, 793
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	3 cut(s)	40, 133, 198
Cfr13I	GGNCC	3 cut(s)	170, 427, 872
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	469
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	3 cut(s)	102, 189, 876
Eam1104I	CTCTTC	2 cut(s)	761, 1027
EarI	CTCTTC	2 cut(s)	761, 1027
Eco130I	CCWWGG	2 cut(s)	67, 568
Eco147I	AGGCCT	1 cut(s)	1021
Eco24I	GRGCYC	1 cut(s)	812
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	3 cut(s)	170, 427, 872
Eco57I	CTGAAG	1 cut(s)	425
Eco81I	CCTNAGG	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	1013
EcoRI	GAATTC	2 cut(s)	34, 287
EcoT14I	CCWWGG	2 cut(s)	67, 568
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	812
ErhI	CCWWGG	2 cut(s)	67, 568
Esp3I	CGTCTC	1 cut(s)	116
FaqI	GGGAC	2 cut(s)	86, 995
FauI	CCCGC	1 cut(s)	994
FbaI	TGATCA	5 cut(s)	295, 673, 712, 883, 1068
Fnu4HI	GCNGC	5 cut(s)	370, 528, 531, 534, 858
FokI	GGATG	4 cut(s)	161, 893, 895, 1069
FriOI	GRGCYC	1 cut(s)	812
Fsp4HI	GCNGC	5 cut(s)	370, 528, 531, 534, 858
FspBI	CTAG	2 cut(s)	266, 485
GluI	GCNGC	5 cut(s)	370, 528, 531, 534, 858
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	5 cut(s)	81, 369, 703, 772, 1021
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	52
HinfI	GANTC	8 cut(s)	74, 141, 157, 450, 892, 938, 959, 973
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	4 cut(s)	82, 524, 659, 1017
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	7 cut(s)	167, 826, 891, 897, 933, 949, 1051
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	211, 1032
HpyCH4III	ACNGT	4 cut(s)	124, 722, 788, 797
HpyCH4V	TGCA	9 cut(s)	317, 347, 388, 400, 412, 475, 533, 753, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 271, 533, 1018
HpyF3I	CTNAG	3 cut(s)	102, 189, 876
Ksp22I	TGATCA	5 cut(s)	295, 673, 712, 883, 1068
LguI	GCTCTTC	1 cut(s)	1027
Lsp1109I	GCAGC	3 cut(s)	517, 539, 545
LweI	GCATC	5 cut(s)	139, 326, 356, 375, 869
MaeI	CTAG	2 cut(s)	266, 485
MaeIII	GTNAC	2 cut(s)	154, 791
MboII	GAAGA	8 cut(s)	312, 342, 417, 431, 778, 1000, 1044, 1104
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	2 cut(s)	812, 1039
MluCI	AATT	7 cut(s)	34, 257, 287, 419, 610, 748, 1096
MlyI	GAGTC	3 cut(s)	68, 151, 947
MmeI	TCCRAC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	1096
MseI	TTAA	4 cut(s)	306, 576, 747, 833
MslI	CAYNNNNRTG	1 cut(s)	1108
MspA1I	CMGCKG	2 cut(s)	530, 536
MspI	CCGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	19, 271, 533, 1018
NlaIV	GGNNCC	1 cut(s)	925
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	475
PaeR7I	CTCGAG	1 cut(s)	1013
PagI	TCATGA	3 cut(s)	40, 133, 198
PceI	AGGCCT	1 cut(s)	1021
PciSI	GCTCTTC	1 cut(s)	1027
PdmI	GAANNNNTTC	1 cut(s)	1096
PfeI	GAWTC	5 cut(s)	141, 450, 892, 959, 973
PkrI	GCNGC	5 cut(s)	371, 529, 532, 535, 859
PleI	GAGTC	3 cut(s)	68, 151, 946
PpsI	GAGTC	3 cut(s)	68, 151, 946
PshBI	ATTAAT	1 cut(s)	747
PspN4I	GGNNCC	1 cut(s)	925
PspPI	GGNCC	3 cut(s)	170, 427, 872
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	656
PvuII	CAGCTG	2 cut(s)	530, 536
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	1108
SapI	GCTCTTC	1 cut(s)	1027
SaqAI	TTAA	4 cut(s)	306, 576, 747, 833
SatI	GCNGC	5 cut(s)	370, 528, 531, 534, 858
Sau96I	GGNCC	3 cut(s)	170, 427, 872
SchI	GAGTC	3 cut(s)	68, 151, 947
SduI	GDGCHC	2 cut(s)	812, 1039
SfaNI	GCATC	5 cut(s)	139, 326, 356, 375, 869
SfcI	CTRYAG	1 cut(s)	531
Sfr274I	CTCGAG	1 cut(s)	1013
SinI	GGWCC	3 cut(s)	170, 427, 872
SlaI	CTCGAG	1 cut(s)	1013
SmiMI	CAYNNNNRTG	1 cut(s)	1108
SmlI	CTYRAG	3 cut(s)	239, 459, 1013
SmoI	CTYRAG	3 cut(s)	239, 459, 1013
Sse9I	AATT	7 cut(s)	34, 257, 287, 419, 610, 748, 1096
SseBI	AGGCCT	1 cut(s)	1021
SsiI	CCGC	3 cut(s)	370, 858, 1001
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	2 cut(s)	266, 485
StuI	AGGCCT	1 cut(s)	1021
StyI	CCWWGG	2 cut(s)	67, 568
TaaI	ACNGT	4 cut(s)	124, 722, 788, 797
TaqI	TCGA	7 cut(s)	126, 302, 453, 936, 941, 962, 1014
TasI	AATT	7 cut(s)	34, 257, 287, 419, 610, 748, 1096
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	2 cut(s)	372, 860
TfiI	GAWTC	5 cut(s)	141, 450, 892, 959, 973
Tru1I	TTAA	4 cut(s)	306, 576, 747, 833
Tru9I	TTAA	4 cut(s)	306, 576, 747, 833
TscAI	CASTG	2 cut(s)	100, 793
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	527, 530, 533
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	8 cut(s)	47, 122, 150, 342, 392, 429, 972, 1073
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	2 cut(s)	100, 793
VpaK11BI	GGWCC	3 cut(s)	170, 427, 872
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	4 cut(s)	34, 257, 287, 1096
XceI	RCATGY	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	2 cut(s)	74, 506
XhoI	CTCGAG	1 cut(s)	1013
XmnI	GAANNNNTTC	1 cut(s)	1096
XspI	CTAG	2 cut(s)	266, 485
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.