Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Forward (+)

30019744 .. 30022486

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACGCCGTCTACGCCTGCAGACGATGCTTGGATCCGCTCTTACCAGCGCTTGCTTCCTGAATCGCAGTCTCTTCTCGCTTCCCGCCGGTCAGTTATACCGGTTGCAATCTCTAGAGTGAATCAGTTCGACGCAGCACGACTAGATGTGGAAATGTCAGCCATGTTGAAGGAACAGCTCGTTAAGGTTTTCACTCTGATGAAGCCAGGAATGCTCTTTCAATACGAACCAGAGCTTGATGCTTTCCTTGAGTTTCTCATTTGGAGATTCTCTATTTGGGTTGACAAACCCACCCCCGGAAACGCTCTCATGAATCTTAGATACAGAGATGAACGAGGAGTCGTTGCTCAGCACTTGGGGAAAGTCAGAACAGGACTGGAAGGACCCGGACTTACTTCTCCCCAAAAGATTTGGTACTGCGTTGCCTCCGTTGGTGGTCAGTACCTCTTCTCCCGTTTGCAGTCATTTTCTGCTTTCCGTAGATGGGGTGATTCTGAGCAGAGACCATTGGCAAGGCGACTTTGGACCCTCGTACAACGAATCGAAGGCATCTACAAAGCTGCTTCTTTTCTTAACCTATTGTCATTTCTTTATACGGGAAGGTATAGGAACCTCATTGAAAAAGCTTTAAAAGCTAGGCTTGTCTATAGGAGTCCCCATATGAACCGATCTGTCAGCTTCGAGTACATGAATCGGCAACTTGTGTGGAATGAATTTTCGGAAATGCTTTTGTTGCTTCTCCCGCTGCTCAACTCTTCAGCTGTTAAGAATATTCTTAGTCCATTTGCCAAGGACAAGTCCTCAAGCACTAAAGAGGATACAGTGACTTGCCCTATTTGCCAAGTGGATCCTGCAATTCCGTTTATAGCTCTGCCTTGTCAGCACAGGTACTGTTACTACTGCATAAGGACCCGCTGCGCTTCAGCAGCATCGTTCCGGTGTCTTAGATGTAACGAGCCTGTGGTTGCCATACAACGGGAAGGTGTTTCAAGTGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

333

Amino Acids

38.17

Weight (kDa)

9.6

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex2_Pex12	PF04757	1 - 204	2.9e-38	Pex2 / Pex12 amino terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	4 cut(s)	37, 85, 743, 913
AclWI	GGATC	4 cut(s)	28, 41, 842, 855
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	2 cut(s)	741, 906
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	416, 443, 534, 686, 890
AfeI	AGCGCT	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	296, 484, 975
AgeI	ACCGGT	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	169, 221, 620, 990
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	8 cut(s)	178, 235, 560, 626, 635, 678, 761, 869
AluI	AGCT	8 cut(s)	178, 235, 560, 626, 635, 678, 761, 869
Alw26I	GTCTC	2 cut(s)	75, 496
AlwI	GGATC	4 cut(s)	28, 41, 842, 855
AlwNI	CAGNNNCTG	1 cut(s)	891
Aor51HI	AGCGCT	1 cut(s)	50
ApeKI	GCWGC	5 cut(s)	134, 560, 745, 915, 926
ApoI	RAATTY	1 cut(s)	713
AsiGI	ACCGGT	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	51, 920
AspS9I	GGNCC	3 cut(s)	383, 525, 909
AsuC2I	CCSGG	2 cut(s)	297, 387
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	3 cut(s)	383, 525, 909
BamHI	GGATCC	2 cut(s)	33, 847
BbvI	GCAGC	5 cut(s)	146, 547, 732, 902, 938
BccI	CCATC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	811
BcnI	CCSGG	2 cut(s)	297, 387
BcoDI	GTCTC	2 cut(s)	75, 496
BfaI	CTAG	3 cut(s)	114, 143, 636
BfmI	CTRYAG	2 cut(s)	18, 646
BfoI	RGCGCY	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	811
BisI	GCNGC	5 cut(s)	135, 561, 746, 916, 927
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	5 cut(s)	136, 562, 747, 917, 928
Bme1390I	CCNGG	3 cut(s)	207, 297, 387
Bme18I	GGWCC	3 cut(s)	383, 525, 909
BmgT120I	GGNCC	3 cut(s)	383, 525, 909
BmiI	GGNNCC	6 cut(s)	35, 385, 527, 611, 849, 911
BmrFI	CCNGG	3 cut(s)	207, 297, 387
BmsI	GCATC	4 cut(s)	16, 229, 558, 938
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	269, 787
BpuMI	CCSGG	2 cut(s)	297, 387
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	2 cut(s)	295, 789
BsaWI	WCCGGW	2 cut(s)	100, 936
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 484, 975
Bse118I	RCCGGY	2 cut(s)	87, 100
Bse1I	ACTGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	295, 789
BseLI	CCNNNNNNNGG	3 cut(s)	296, 484, 975
BseMII	CTCAG	2 cut(s)	362, 486
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	5 cut(s)	146, 547, 732, 902, 938
BshTI	ACCGGT	1 cut(s)	100
BsiSI	CCGG	5 cut(s)	88, 101, 297, 387, 937
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	3 cut(s)	296, 484, 975
BsmAI	GTCTC	2 cut(s)	75, 496
BsmFI	GGGAC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	33, 668, 847
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	4 cut(s)	37, 85, 743, 913
BspCNI	CTCAG	2 cut(s)	361, 487
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	6 cut(s)	35, 385, 527, 611, 849, 911
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	4 cut(s)	28, 41, 842, 855
BspTNI	GGTCTC	1 cut(s)	496
BsrBI	CCGCTC	1 cut(s)	39
BsrFI	RCCGGY	2 cut(s)	87, 100
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	2 cut(s)	87, 100
BssECI	CCNNGG	2 cut(s)	295, 789
BssMI	GATC	3 cut(s)	33, 668, 847
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	789
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	823, 893
Bst6I	CTCTTC	3 cut(s)	78, 452, 760
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	18, 53
BstDEI	CTNAG	5 cut(s)	317, 348, 495, 776, 944
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 920
BstKTI	GATC	3 cut(s)	36, 671, 850
BstMAI	GTCTC	2 cut(s)	75, 496
BstMBI	GATC	3 cut(s)	33, 668, 847
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 26, 211, 632, 733, 742, 837, 880, 926
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	3 cut(s)	205, 295, 385
BstSFI	CTRYAG	2 cut(s)	18, 646
BstV1I	GCAGC	5 cut(s)	146, 547, 732, 902, 938
BstX2I	RGATCY	2 cut(s)	33, 847
BstYI	RGATCY	2 cut(s)	33, 847
BsuI	GTATCC	1 cut(s)	811
BtsIMutI	CAGTG	1 cut(s)	828
Cac8I	GCNNGC	2 cut(s)	18, 53
CaiI	CAGNNNCTG	1 cut(s)	891
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	2 cut(s)	51, 920
Cfr10I	RCCGGY	2 cut(s)	87, 100
Cfr13I	GGNCC	3 cut(s)	383, 525, 909
CseI	GACGC	2 cut(s)	13, 140
Csp6I	GTAC	5 cut(s)	415, 442, 533, 685, 889
CspAI	ACCGGT	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	686, 721
CviAII	CATG	3 cut(s)	163, 310, 688
CviQI	GTAC	5 cut(s)	415, 442, 533, 685, 889
DdeI	CTNAG	5 cut(s)	317, 348, 495, 776, 944
DpnI	GATC	3 cut(s)	35, 670, 849
DpnII	GATC	3 cut(s)	33, 668, 847
DraI	TTTAAA	1 cut(s)	630
Eam1104I	CTCTTC	3 cut(s)	78, 452, 760
EarI	CTCTTC	3 cut(s)	78, 452, 760
Eco130I	CCWWGG	1 cut(s)	789
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	383, 525, 909
Eco47III	AGCGCT	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	741, 906
EcoO109I	RGGNCCY	2 cut(s)	383, 909
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	3 cut(s)	166, 313, 691
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	3 cut(s)	162, 309, 687
FauI	CCCGC	3 cut(s)	92, 750, 920
FauNDI	CATATG	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	5 cut(s)	135, 561, 746, 916, 927
Fsp4HI	GCNGC	5 cut(s)	135, 561, 746, 916, 927
FspBI	CTAG	3 cut(s)	114, 143, 636
GlaI	GCGC	2 cut(s)	50, 919
GluI	GCNGC	5 cut(s)	135, 561, 746, 916, 927
HaeII	RGCGCY	1 cut(s)	52
HapII	CCGG	5 cut(s)	88, 101, 297, 387, 937
HgaI	GACGC	2 cut(s)	13, 140
HhaI	GCGC	2 cut(s)	51, 920
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	166, 313, 691
Hin6I	GCGC	2 cut(s)	49, 918
HinP1I	GCGC	2 cut(s)	49, 918
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	9 cut(s)	62, 121, 267, 313, 339, 491, 540, 652, 691
HpaII	CCGG	5 cut(s)	88, 101, 297, 387, 937
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	12, 283
Hpy188I	TCNGA	4 cut(s)	198, 368, 496, 721
Hpy188III	TCNNGA	3 cut(s)	59, 114, 310
Hpy8I	GTNNAC	2 cut(s)	12, 283
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	5 cut(s)	163, 374, 539, 594, 974
HpyCH4III	ACNGT	2 cut(s)	823, 893
HpyCH4V	TGCA	5 cut(s)	20, 107, 460, 854, 903
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 26, 211, 632, 733, 742, 837, 880, 926
HpyF3I	CTNAG	5 cut(s)	317, 348, 495, 776, 944
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	166, 313, 691
HspAI	GCGC	2 cut(s)	49, 918
Kzo9I	GATC	3 cut(s)	33, 668, 847
Lsp1109I	GCAGC	5 cut(s)	146, 547, 732, 902, 938
LweI	GCATC	4 cut(s)	16, 229, 558, 938
MaeI	CTAG	3 cut(s)	114, 143, 636
MaeIII	GTNAC	3 cut(s)	823, 893, 950
MalI	GATC	3 cut(s)	35, 670, 849
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	3 cut(s)	33, 668, 847
MboII	GAAGA	3 cut(s)	65, 439, 747
MflI	RGATCY	2 cut(s)	33, 847
MluCI	AATT	2 cut(s)	713, 855
MlyI	GAGTC	2 cut(s)	348, 661
MnlI	CCTC	7 cut(s)	329, 436, 455, 539, 623, 808, 811
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	4 cut(s)	183, 573, 629, 765
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	3 cut(s)	745, 761, 915
MspI	CCGG	5 cut(s)	88, 101, 297, 387, 937
MspR9I	CCNGG	3 cut(s)	207, 297, 387
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	9 cut(s)	13, 26, 211, 632, 733, 742, 837, 880, 926
NciI	CCSGG	2 cut(s)	297, 387
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	3 cut(s)	33, 668, 847
NlaIII	CATG	3 cut(s)	166, 313, 691
NlaIV	GGNNCC	6 cut(s)	35, 385, 527, 611, 849, 911
NmuCI	GTSAC	1 cut(s)	823
PagI	TCATGA	1 cut(s)	309
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	7 cut(s)	62, 121, 267, 313, 491, 540, 691
PflFI	GACNNNGTC	1 cut(s)	7
PinAI	ACCGGT	1 cut(s)	100
PkrI	GCNGC	5 cut(s)	136, 562, 747, 917, 928
PleI	GAGTC	2 cut(s)	347, 660
PpsI	GAGTC	2 cut(s)	347, 660
PpuMI	RGGWCCY	2 cut(s)	383, 909
Psp5II	RGGWCCY	2 cut(s)	383, 909
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	6 cut(s)	35, 385, 527, 611, 849, 911
PspPI	GGNCC	3 cut(s)	383, 525, 909
PspPPI	RGGWCCY	2 cut(s)	383, 909
PstI	CTGCAG	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	891
PsuI	RGATCY	2 cut(s)	33, 847
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	5 cut(s)	416, 443, 534, 686, 890
RsaNI	GTAC	5 cut(s)	415, 442, 533, 685, 889
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	183, 573, 629, 765
SatI	GCNGC	5 cut(s)	135, 561, 746, 916, 927
Sau3AI	GATC	3 cut(s)	33, 668, 847
Sau96I	GGNCC	3 cut(s)	383, 525, 909
SchI	GAGTC	2 cut(s)	348, 661
ScrFI	CCNGG	3 cut(s)	207, 297, 387
SfaNI	GCATC	4 cut(s)	16, 229, 558, 938
SfcI	CTRYAG	2 cut(s)	18, 646
SinI	GGWCC	3 cut(s)	383, 525, 909
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	248, 802
SmoI	CTYRAG	2 cut(s)	248, 802
Sse9I	AATT	2 cut(s)	713, 855
SsiI	CCGC	4 cut(s)	37, 85, 743, 913
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	3 cut(s)	114, 143, 636
StyD4I	CCNGG	3 cut(s)	205, 295, 385
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	2 cut(s)	823, 893
TaqI	TCGA	3 cut(s)	129, 543, 681
TasI	AATT	2 cut(s)	713, 855
TatI	WGTACW	1 cut(s)	684
TfiI	GAWTC	7 cut(s)	62, 121, 267, 313, 491, 540, 691
Tru1I	TTAA	4 cut(s)	183, 573, 629, 765
Tru9I	TTAA	4 cut(s)	183, 573, 629, 765
TscAI	CASTG	1 cut(s)	828
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	5 cut(s)	134, 560, 745, 915, 926
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	6 cut(s)	215, 326, 345, 677, 704, 726
TspGWI	ACGGA	3 cut(s)	418, 467, 849
TspRI	CASTG	1 cut(s)	828
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	3 cut(s)	383, 525, 909
XapI	RAATTY	1 cut(s)	713
XbaI	TCTAGA	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	3 cut(s)	114, 143, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.