Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Forward (+)

56902052 .. 56906566

Gene Structure 4515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCAGCCATGTTGAAAGAACAGTTAGTTAAGGTCTTCTCTTTGATGAAGCCAGGAATGTTATTTCAATATGAAGCTGAACTTGATGCCTTCCTCGAGTTTCTTATCTGGCGGTTCTCAATTTGGGTAGATAAGCCTACCCCGGGAATTTCTCTCATGAACCTGAGGTATAGAGACGAACGTGCACTGGAAGCCAGAGGAAAAGTTAGGACGGGGTTGGAAGGACCTGGACTTACAGTTGGACAGAAGCTTTGGTATTGTGTTGCCACTGTTGGTGGTCAATACATCTGGGCCCGATTGCAATCATTCTCTGCTTTCCGTAGGTGGGGCGATTCTGAACAGAGGTCACTGGCTCGAGGAGCATGGATTCTCATACAACGCATAGAAGGACTTTATAAAGCTGCCTCATTTTGCAACCTGCTTTTATTTCTTTATACCGGAAGGTATAGGACTCTTATTGAAAGAGCTTTAAGAGCTAGGCTGGTCTATGGGAGCCCAATTATGAACCGAGCAGTTAGCTTTGAGTACATGAACCGCCAGTTAGTATGGAATGAATTCTCGGAGATGTTATTATTGCTTCTTCCTCTTCTCAACTCATCATCTGTGAAAAACTTTCTTCGCCTGTTTTCCAAGGATAAATCTTCAAGTTCAACAGAGGATGACTCTGCTTGCCCCATTTGCCAGGCCAGTCCAACCGTTCCATTTTTCGCTCTTCCCTGTCAGCACAGATACTGCTACTACTGCCTAAGAACACGGTGTGCAGCAGTCCCATCCTTCAGATGTTCCAGATGCAATGAACCAGTTGTCGCGATGCAGCGGCAGGCCAACAATCCAAATCAAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

283

Amino Acids

32.56

Weight (kDa)

9.56

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex2_Pex12	PF04757	1 - 206	1.3e-38	Pex2 / Pex12 amino terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	426
AccII	CGCG	1 cut(s)	809
AciI	CCGC	3 cut(s)	112, 535, 817
AcsI	RAATTY	2 cut(s)	147, 554
AcuI	CTGAAG	1 cut(s)	760
AdeI	CACNNNGTG	1 cut(s)	758
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	143, 325
AgsI	TTSAA	5 cut(s)	16, 68, 461, 645, 651
AjnI	CCWGG	3 cut(s)	52, 226, 681
AluBI	AGCT	6 cut(s)	77, 250, 401, 467, 476, 519
AluI	AGCT	6 cut(s)	77, 250, 401, 467, 476, 519
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	168
Alw44I	GTGCAC	1 cut(s)	183
AlwNI	CAGNNNCTG	1 cut(s)	732
Ama87I	CYCGRG	3 cut(s)	95, 142, 354
AoxI	GGCC	3 cut(s)	291, 684, 822
ApaI	GGGCCC	1 cut(s)	295
ApaLI	GTGCAC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	401, 761, 814
ApoI	RAATTY	2 cut(s)	147, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
Asp700I	GAANNNNTTC	1 cut(s)	554
AspS9I	GGNCC	3 cut(s)	224, 291, 292
AsuC2I	CCSGG	2 cut(s)	143, 144
AvaI	CYCGRG	3 cut(s)	95, 142, 354
AvaII	GGWCC	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	164
BaeGI	GKGCMC	2 cut(s)	187, 295
BanII	GRGCYC	2 cut(s)	295, 497
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	388, 773, 826
BccI	CCATC	1 cut(s)	778
BciT130I	CCWGG	3 cut(s)	54, 228, 683
BcnI	CCSGG	2 cut(s)	143, 144
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	426
BisI	GCNGC	4 cut(s)	402, 762, 815, 818
BlsI	GCNGC	4 cut(s)	403, 763, 816, 819
Bme1390I	CCNGG	5 cut(s)	54, 143, 144, 228, 683
Bme18I	GGWCC	1 cut(s)	224
BmeT110I	CYCGRG	3 cut(s)	95, 142, 354
BmgT120I	GGNCC	3 cut(s)	224, 291, 292
BmiI	GGNNCC	2 cut(s)	293, 494
BmrFI	CCNGG	5 cut(s)	54, 143, 144, 228, 683
BmsI	GCATC	3 cut(s)	76, 779, 801
BpiI	GAAGAC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpuMI	CCSGG	2 cut(s)	143, 144
BsaBI	GATNNNNATC	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	141, 142, 630
BsaWI	WCCGGW	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 325
Bse1I	ACTGG	5 cut(s)	192, 354, 538, 687, 800
Bse21I	CCTNAGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	799
Bse8I	GATNNNNATC	1 cut(s)	301
BseBI	CCWGG	3 cut(s)	54, 228, 683
BseDI	CCNNGG	3 cut(s)	141, 142, 630
BseGI	GGATG	2 cut(s)	664, 770
BseJI	GATNNNNATC	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	143, 325
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	5 cut(s)	192, 354, 538, 687, 800
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	2 cut(s)	187, 295
BseXI	GCAGC	3 cut(s)	388, 773, 826
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	809
BshFI	GGCC	3 cut(s)	293, 686, 824
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	3 cut(s)	95, 142, 354
BsiSI	CCGG	2 cut(s)	143, 438
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	2 cut(s)	143, 325
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	3 cut(s)	293, 686, 824
BsoBI	CYCGRG	3 cut(s)	95, 142, 354
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	3 cut(s)	187, 295, 497
Bsp68I	TCGCGA	1 cut(s)	809
BspACI	CCGC	3 cut(s)	112, 535, 817
BspANI	GGCC	3 cut(s)	293, 686, 824
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	809
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	293, 494
BspMI	ACCTGC	1 cut(s)	426
BspQI	GCTCTTC	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	799
BsrI	ACTGG	5 cut(s)	192, 354, 538, 687, 800
BssECI	CCNNGG	3 cut(s)	141, 142, 630
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	3 cut(s)	54, 228, 683
Bst4CI	ACNGT	5 cut(s)	24, 238, 271, 697, 756
Bst6I	CTCTTC	2 cut(s)	591, 717
BstC8I	GCNNGC	2 cut(s)	670, 822
BstDEI	CTNAG	2 cut(s)	164, 746
BstF5I	GGATG	2 cut(s)	664, 770
BstFNI	CGCG	1 cut(s)	809
BstMAI	GTCTC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 359, 473, 678, 741
BstNI	CCWGG	3 cut(s)	54, 228, 683
BstSCI	CCNGG	5 cut(s)	52, 141, 142, 226, 681
BstSLI	GKGCMC	2 cut(s)	187, 295
BstUI	CGCG	1 cut(s)	809
BstV1I	GCAGC	3 cut(s)	388, 773, 826
BstV2I	GAAGAC	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	293, 686, 824
BtgZI	GCGATG	1 cut(s)	824
BtsCI	GGATG	2 cut(s)	664, 770
BtsIMutI	CAGTG	3 cut(s)	185, 267, 347
BtuMI	TCGCGA	1 cut(s)	809
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	670, 822
CaiI	CAGNNNCTG	1 cut(s)	732
CciI	TCATGA	1 cut(s)	156
Cfr13I	GGNCC	3 cut(s)	224, 291, 292
Cfr9I	CCCGGG	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	4 cut(s)	10, 157, 363, 529
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	2 cut(s)	164, 746
DraIII	CACNNNGTG	1 cut(s)	758
Eam1104I	CTCTTC	2 cut(s)	591, 717
EarI	CTCTTC	2 cut(s)	591, 717
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	2 cut(s)	295, 497
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	760
Eco81I	CCTNAGG	1 cut(s)	164
Eco88I	CYCGRG	3 cut(s)	95, 142, 354
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	554
EcoRII	CCWGG	3 cut(s)	52, 226, 681
EcoT14I	CCWWGG	1 cut(s)	630
EcoT38I	GRGCYC	2 cut(s)	295, 497
ErhI	CCWWGG	1 cut(s)	630
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	4 cut(s)	13, 160, 366, 532
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	4 cut(s)	9, 156, 362, 528
Fnu4HI	GCNGC	4 cut(s)	402, 762, 815, 818
FokI	GGATG	2 cut(s)	671, 757
FriOI	GRGCYC	2 cut(s)	295, 497
Fsp4HI	GCNGC	4 cut(s)	402, 762, 815, 818
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	4 cut(s)	402, 762, 815, 818
HaeIII	GGCC	3 cut(s)	293, 686, 824
HapII	CCGG	2 cut(s)	143, 438
Hin1II	CATG	4 cut(s)	13, 160, 366, 532
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	4 cut(s)	332, 367, 451, 662
HpaII	CCGG	2 cut(s)	143, 438
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	3 cut(s)	337, 562, 779
Hpy188III	TCNNGA	3 cut(s)	157, 786, 808
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	5 cut(s)	100, 215, 380, 435, 784
HpyCH4III	ACNGT	5 cut(s)	24, 238, 271, 697, 756
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	6 cut(s)	185, 301, 414, 761, 792, 814
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 359, 473, 678, 741
HpyF3I	CTNAG	2 cut(s)	164, 746
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	4 cut(s)	13, 160, 366, 532
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	359, 492
Lsp1109I	GCAGC	3 cut(s)	388, 773, 826
LweI	GCATC	3 cut(s)	76, 779, 801
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	345
MboII	GAAGA	6 cut(s)	28, 572, 578, 608, 633, 704
MhlI	GDGCHC	3 cut(s)	187, 295, 497
MluCI	AATT	4 cut(s)	120, 147, 498, 554
MlyI	GAGTC	2 cut(s)	445, 656
MmeI	TCCRAC	3 cut(s)	198, 220, 716
MnlI	CCTC	8 cut(s)	104, 159, 191, 336, 350, 415, 594, 649
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	2 cut(s)	30, 470
MspA1I	CMGCKG	1 cut(s)	817
MspI	CCGG	2 cut(s)	143, 438
MspR9I	CCNGG	5 cut(s)	54, 143, 144, 228, 683
MvaI	CCWGG	3 cut(s)	54, 228, 683
MvnI	CGCG	1 cut(s)	809
MwoI	GCNNNNNNNGC	5 cut(s)	191, 359, 473, 678, 741
NciI	CCSGG	2 cut(s)	143, 144
NlaIII	CATG	4 cut(s)	13, 160, 366, 532
NlaIV	GGNNCC	2 cut(s)	293, 494
NmuCI	GTSAC	1 cut(s)	345
NruI	TCGCGA	1 cut(s)	809
PaeR7I	CTCGAG	2 cut(s)	95, 354
PagI	TCATGA	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	332, 367
PkrI	GCNGC	4 cut(s)	403, 763, 816, 819
PleI	GAGTC	2 cut(s)	445, 656
PpsI	GAGTC	2 cut(s)	445, 656
PpuMI	RGGWCCY	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	3 cut(s)	52, 226, 681
PspGI	CCWGG	3 cut(s)	52, 226, 681
PspN4I	GGNNCC	2 cut(s)	293, 494
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	224, 291, 292
PspPPI	RGGWCCY	1 cut(s)	224
PspXI	VCTCGAGB	2 cut(s)	95, 354
PstNI	CAGNNNCTG	1 cut(s)	732
RruI	TCGCGA	1 cut(s)	809
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	30, 470
SatI	GCNGC	4 cut(s)	402, 762, 815, 818
Sau96I	GGNCC	3 cut(s)	224, 291, 292
SchI	GAGTC	2 cut(s)	445, 656
ScrFI	CCNGG	5 cut(s)	54, 143, 144, 228, 683
SduI	GDGCHC	3 cut(s)	187, 295, 497
SfaNI	GCATC	3 cut(s)	76, 779, 801
Sfr274I	CTCGAG	2 cut(s)	95, 354
SinI	GGWCC	1 cut(s)	224
SlaI	CTCGAG	2 cut(s)	95, 354
SmaI	CCCGGG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	95, 354
SmoI	CTYRAG	2 cut(s)	95, 354
Sse9I	AATT	4 cut(s)	120, 147, 498, 554
SsiI	CCGC	3 cut(s)	112, 535, 817
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	5 cut(s)	52, 141, 142, 226, 681
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	5 cut(s)	24, 238, 271, 697, 756
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	96, 355
TasI	AATT	4 cut(s)	120, 147, 498, 554
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	820
TfiI	GAWTC	2 cut(s)	332, 367
Tru1I	TTAA	2 cut(s)	30, 470
Tru9I	TTAA	2 cut(s)	30, 470
TscAI	CASTG	3 cut(s)	192, 274, 354
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	3 cut(s)	401, 761, 814
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	7 cut(s)	62, 87, 173, 518, 545, 567, 810
TspGWI	ACGGA	1 cut(s)	308
TspMI	CCCGGG	1 cut(s)	142
TspRI	CASTG	3 cut(s)	192, 274, 354
VneI	GTGCAC	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	147, 554
XhoI	CTCGAG	2 cut(s)	95, 354
XmaI	CCCGGG	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.