Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033759.1

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2189

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033759.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 406 bp

gtataggactcttattgaaagagctttaagggctaggctggtctatgggagcccaattatgaaccgagcagttagctttgagtacatgaaccgccagttagtatggaatgaattctcggagatgttattattgcttctacctcttctcaactcatcatctgtgaaaaactttcttcgcctgttttccaaggataaatcttcaggttcaacagaggatgactctgcttgccccatttgccaggccagtccaaccgttccatttttcgctctgccctgtcagcacagatactgctactactgcctaagaacacggtgtgcagcagtcccatccttcagatgttccagatgcaatgaaccagttgtcgccatgcagcggcaggccaacaatccaaatcaaaagcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

134

Amino Acids

15.44

Weight (kDa)

9.3

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	92, 374
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	184, 317
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	18, 208
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	2 cut(s)	24, 76
AluI	AGCT	2 cut(s)	24, 76
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	2 cut(s)	241, 379
ApeKI	GCWGC	2 cut(s)	318, 371
ApoI	RAATTY	1 cut(s)	111
Asp700I	GAANNNNTTC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	330, 383
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	34
BisI	GCNGC	3 cut(s)	319, 372, 375
BlsI	GCNGC	3 cut(s)	320, 373, 376
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	3 cut(s)	95, 244, 357
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	221, 327
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	356
BseNI	ACTGG	3 cut(s)	95, 244, 357
BseXI	GCAGC	2 cut(s)	330, 383
BsgI	GTGCAG	1 cut(s)	337
BshFI	GGCC	2 cut(s)	243, 381
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	2 cut(s)	243, 381
Bsp1286I	GDGCHC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	92, 374
BspANI	GGCC	2 cut(s)	243, 381
BspLI	GGNNCC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	3 cut(s)	95, 244, 357
BssECI	CCNNGG	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	254, 313
Bst6I	CTCTTC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	227, 379
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	221, 327
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 235, 278, 298
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	330, 383
BsuRI	GGCC	2 cut(s)	243, 381
BtsCI	GGATG	2 cut(s)	221, 327
Cac8I	GCNNGC	2 cut(s)	227, 379
CaiI	CAGNNNCTG	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	86, 368
CviJI	RGCY	7 cut(s)	24, 33, 38, 52, 76, 243, 381
CviKI_1	RGCY	7 cut(s)	24, 33, 38, 52, 76, 243, 381
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	303
DraIII	CACNNNGTG	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	184, 317
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	89, 371
FaiI	YATR	6 cut(s)	4, 46, 60, 87, 104, 369
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	2 cut(s)	85, 367
Fnu4HI	GCNGC	3 cut(s)	319, 372, 375
FokI	GGATG	2 cut(s)	228, 314
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	319, 372, 375
FspBI	CTAG	1 cut(s)	34
GluI	GCNGC	3 cut(s)	319, 372, 375
HaeIII	GGCC	2 cut(s)	243, 381
Hin1II	CATG	2 cut(s)	89, 371
HinfI	GANTC	2 cut(s)	8, 219
Hpy188I	TCNGA	2 cut(s)	119, 336
Hpy188III	TCNNGA	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	254, 313
HpyCH4V	TGCA	3 cut(s)	318, 349, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 235, 278, 298
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	89, 371
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	2 cut(s)	330, 383
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	34
MboII	GAAGA	3 cut(s)	135, 165, 190
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	2 cut(s)	55, 111
MlyI	GAGTC	2 cut(s)	2, 213
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	2 cut(s)	151, 206
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	4 cut(s)	30, 235, 278, 298
NlaIII	CATG	2 cut(s)	89, 371
NlaIV	GGNNCC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	320, 373, 376
PleI	GAGTC	2 cut(s)	2, 213
PpsI	GAGTC	2 cut(s)	2, 213
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	3 cut(s)	319, 372, 375
SchI	GAGTC	2 cut(s)	2, 213
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	4 cut(s)	26, 78, 143, 206
SfaNI	GCATC	1 cut(s)	336
Sse9I	AATT	2 cut(s)	55, 111
SsiI	CCGC	2 cut(s)	92, 374
SspMI	CTAG	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	254, 313
TasI	AATT	2 cut(s)	55, 111
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	2 cut(s)	318, 371
TspDTI	ATGAA	4 cut(s)	75, 102, 124, 367
XapI	RAATTY	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.