Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Forward (+)

61718195 .. 61723875

Gene Structure 5681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG426000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGCGGTAGCAGTAGCAGTGGCAGTAATTCTAGACCACCAGCAGAAGACGCTTGGGTTCACGCTTACAAGACCTTAATTCCCCAATGGCAACATCTCTCACTTTCTCAATCTCACTCTCACCAGTCAATAATTCCAATTTCAATATCTAGAGTAAACCAATTCGATGCGGCAAGACTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTAGTTAAGGTCTTCTCTTTGATGAAGCCAGGAATGTTATTTCAATATGAAGCGGAACTTGATGCTTTCCTCGAGTTTCTTATCTGGCGGTTCTCAATTTGGGTAGATAAGCCTACCCCGGGAATTTCTCTCATGAACCTGAGGTATAGAGACGAACGTGCACTGGAAGCCAGAGGAAAAGTTAGGACGGGGTTGGAAGGACCTGGACTTACAGTTGCACAGAAGCTTTGGTATTGTGTTGCCACTGTTGGTGGTCAATACATCTGGGCCCGATTGCAATCATTCTCTGCTTTCCGTAGGTGGGGCGATTCTGAACAGAGGTCACTGGCACGAGGAGCGTGGATTCTCATACAACGCATAGAAGGACTTTATAAAGCTGCCTCATTTTGCAACCTGCTTTTATTTCTTTACACTGGAAGGTATAGGACTCTTATTGAAAGAGCTTTAAGAGCTAGGCTGGTCTATGGGAGCCCAATTATGAACCGAGCAGTTAGCTTTGAGTACATGAACCGCCAGTTAGTATGGAATGAATTCTCGGTAGGTTATTGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

255

Amino Acids

29.32

Weight (kDa)

9.61

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex2_Pex12	PF04757	61 - 250	2.1e-35	Pex2 / Pex12 amino terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
Acc36I	ACCTGC	1 cut(s)	615
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	5 cut(s)	6, 170, 266, 301, 724
AcsI	RAATTY	2 cut(s)	336, 743
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	2 cut(s)	332, 514
AgsI	TTSAA	5 cut(s)	144, 188, 205, 257, 650
AjnI	CCWGG	2 cut(s)	241, 415
AluBI	AGCT	5 cut(s)	439, 590, 656, 665, 708
AluI	AGCT	5 cut(s)	439, 590, 656, 665, 708
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	357
Alw44I	GTGCAC	1 cut(s)	372
Ama87I	CYCGRG	2 cut(s)	284, 331
AoxI	GGCC	1 cut(s)	480
ApaI	GGGCCC	1 cut(s)	484
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	2 cut(s)	336, 743
Asp700I	GAANNNNTTC	1 cut(s)	743
AspS9I	GGNCC	3 cut(s)	413, 480, 481
AsuC2I	CCSGG	2 cut(s)	332, 333
AsuHPI	GGTGA	1 cut(s)	113
AvaI	CYCGRG	2 cut(s)	284, 331
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	376, 484
BanII	GRGCYC	2 cut(s)	484, 686
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	54, 217
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	577
BciT130I	CCWGG	2 cut(s)	243, 417
BcnI	CCSGG	2 cut(s)	332, 333
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	3 cut(s)	33, 150, 666
BfuAI	ACCTGC	1 cut(s)	615
BisI	GCNGC	2 cut(s)	171, 591
BlsI	GCNGC	2 cut(s)	172, 592
Bme1390I	CCNGG	4 cut(s)	243, 332, 333, 417
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	2 cut(s)	284, 331
BmgT120I	GGNCC	3 cut(s)	413, 480, 481
BmiI	GGNNCC	2 cut(s)	482, 683
BmrFI	CCNGG	4 cut(s)	243, 332, 333, 417
BmsI	GCATC	2 cut(s)	157, 265
BpiI	GAAGAC	2 cut(s)	54, 217
BpuMI	CCSGG	2 cut(s)	332, 333
BsaBI	GATNNNNATC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	330, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 514
Bse1I	ACTGG	6 cut(s)	124, 183, 381, 543, 631, 727
Bse21I	CCTNAGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	490
BseBI	CCWGG	2 cut(s)	243, 417
BseDI	CCNNGG	2 cut(s)	330, 331
BseJI	GATNNNNATC	1 cut(s)	490
BseLI	CCNNNNNNNGG	2 cut(s)	332, 514
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	6 cut(s)	124, 183, 381, 543, 631, 727
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	2 cut(s)	376, 484
BseXI	GCAGC	1 cut(s)	577
BshFI	GGCC	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	2 cut(s)	284, 331
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	332, 514
BsmAI	GTCTC	1 cut(s)	357
BsmBI	CGTCTC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	482
BsoBI	CYCGRG	2 cut(s)	284, 331
Bsp120I	GGGCCC	1 cut(s)	480
Bsp1286I	GDGCHC	3 cut(s)	376, 484, 686
BspACI	CCGC	5 cut(s)	6, 170, 266, 301, 724
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	482, 683
BspMI	ACCTGC	1 cut(s)	615
BsrBI	CCGCTC	1 cut(s)	6
BsrI	ACTGG	6 cut(s)	124, 183, 381, 543, 631, 727
BssECI	CCNNGG	2 cut(s)	330, 331
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	243, 417
Bst4CI	ACNGT	3 cut(s)	213, 427, 460
BstDEI	CTNAG	1 cut(s)	353
BstMAI	GTCTC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 380, 548, 662
BstNI	CCWGG	2 cut(s)	243, 417
BstSCI	CCNGG	4 cut(s)	241, 330, 331, 415
BstSLI	GKGCMC	2 cut(s)	376, 484
BstV1I	GCAGC	1 cut(s)	577
BstV2I	GAAGAC	2 cut(s)	54, 217
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	482
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	5 cut(s)	25, 374, 456, 536, 624
BveI	ACCTGC	1 cut(s)	615
CciI	TCATGA	1 cut(s)	345
Cfr13I	GGNCC	3 cut(s)	413, 480, 481
Cfr9I	CCCGGG	1 cut(s)	331
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	3 cut(s)	199, 346, 718
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	484, 686
Eco47I	GGWCC	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	353
Eco88I	CYCGRG	2 cut(s)	284, 331
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	241, 415
EcoT38I	GRGCYC	2 cut(s)	484, 686
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	3 cut(s)	202, 349, 721
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	3 cut(s)	198, 345, 717
Fnu4HI	GCNGC	2 cut(s)	171, 591
FriOI	GRGCYC	2 cut(s)	484, 686
Fsp4HI	GCNGC	2 cut(s)	171, 591
FspBI	CTAG	3 cut(s)	33, 150, 666
GluI	GCNGC	2 cut(s)	171, 591
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	202, 349, 721
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	521, 556, 640
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	61, 157, 374
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	3 cut(s)	33, 150, 346
Hpy8I	GTNNAC	3 cut(s)	61, 157, 374
HpyAV	CCTTC	3 cut(s)	404, 569, 624
HpyCH4III	ACNGT	3 cut(s)	213, 427, 460
HpyCH4IV	ACGT	2 cut(s)	183, 370
HpyCH4V	TGCA	4 cut(s)	374, 431, 490, 603
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 380, 548, 662
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	2 cut(s)	183, 370
Hsp92II	CATG	3 cut(s)	202, 349, 721
LmnI	GCTCC	2 cut(s)	548, 681
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	2 cut(s)	157, 265
MaeI	CTAG	3 cut(s)	33, 150, 666
MaeII	ACGT	2 cut(s)	183, 370
MaeIII	GTNAC	1 cut(s)	534
MbiI	CCGCTC	1 cut(s)	6
MboII	GAAGA	2 cut(s)	59, 217
MhlI	GDGCHC	3 cut(s)	376, 484, 686
MluCI	AATT	9 cut(s)	28, 78, 132, 138, 161, 309, 336, 687, 743
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	6 cut(s)	293, 348, 380, 525, 539, 604
MroXI	GAANNNNTTC	1 cut(s)	743
MseI	TTAA	3 cut(s)	77, 219, 659
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	4 cut(s)	243, 332, 333, 417
MvaI	CCWGG	2 cut(s)	243, 417
MwoI	GCNNNNNNNGC	4 cut(s)	50, 380, 548, 662
NciI	CCSGG	2 cut(s)	332, 333
NlaIII	CATG	3 cut(s)	202, 349, 721
NlaIV	GGNNCC	2 cut(s)	482, 683
NmuCI	GTSAC	1 cut(s)	534
PaeR7I	CTCGAG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	2 cut(s)	521, 556
PkrI	GCNGC	2 cut(s)	172, 592
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
PpuMI	RGGWCCY	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	241, 415
PspGI	CCWGG	2 cut(s)	241, 415
PspN4I	GGNNCC	2 cut(s)	482, 683
PspOMI	GGGCCC	1 cut(s)	480
PspPI	GGNCC	3 cut(s)	413, 480, 481
PspPPI	RGGWCCY	1 cut(s)	413
PspXI	VCTCGAGB	1 cut(s)	284
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SaqAI	TTAA	3 cut(s)	77, 219, 659
SatI	GCNGC	2 cut(s)	171, 591
Sau96I	GGNCC	3 cut(s)	413, 480, 481
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	4 cut(s)	243, 332, 333, 417
SduI	GDGCHC	3 cut(s)	376, 484, 686
SfaNI	GCATC	2 cut(s)	157, 265
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	9 cut(s)	28, 78, 132, 138, 161, 309, 336, 687, 743
SsiI	CCGC	5 cut(s)	6, 170, 266, 301, 724
SspMI	CTAG	3 cut(s)	33, 150, 666
StyD4I	CCNGG	4 cut(s)	241, 330, 331, 415
TaaI	ACNGT	3 cut(s)	213, 427, 460
TaiI	ACGT	2 cut(s)	186, 373
TaqI	TCGA	2 cut(s)	165, 285
TasI	AATT	9 cut(s)	28, 78, 132, 138, 161, 309, 336, 687, 743
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	521, 556
Tru1I	TTAA	3 cut(s)	77, 219, 659
Tru9I	TTAA	3 cut(s)	77, 219, 659
TscAI	CASTG	5 cut(s)	25, 381, 463, 543, 631
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	6 cut(s)	251, 276, 362, 707, 734, 756
TspGWI	ACGGA	1 cut(s)	497
TspMI	CCCGGG	1 cut(s)	331
TspRI	CASTG	5 cut(s)	25, 381, 463, 543, 631
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	336, 743
XbaI	TCTAGA	2 cut(s)	32, 149
XhoI	CTCGAG	1 cut(s)	284
XmaI	CCCGGG	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	3 cut(s)	33, 150, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.