Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Reverse (-)

19963359 .. 19968092

Gene Structure 4734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1208200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGTGGTAGTAGTAATAGTAATGTTAGACTGCCAGCAGAAGACGCTTGGCTTCACACTTACAAGTCCTTACTTCCTCAATGGAAATCCATCTCCTACTCCCACCAGTCAATAATCCCAATTTCGATATCCAGAGTTAACCAATTCGATGCGGGAAGGCTGGACATTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAGGTCTTCTCCTTAATGAAGCCAGGAATGCTATTTCAATATGAAGCAGAACTTGATGCTTTCCTCGAGTTTCTTATCTGGCGGTTCTCAATTTGGGTAGATAAACCTACTCCAGGAATCGCTCTCATGAATCTGAGGTATAGAGACGAGCGTGCTATGGAAGCAAGAGGAAAAGTCAGAACGGGTTTGGAAGGACCTGGACTTACAGTTGCGCAGAAGCTTTGGTATTGTGTTGCTACTGTTGGTGGTCAATACATATGGGCTCGTTTGCAATCATTTTCTGCTTTCCGTAGGTGGGGCGATTCTGAACAGAGGTCAGTGGCACGAGGAGCATGGATTCTGATACAACGTATAGAAGGACTTTACAAAGCTGCCTCATTTGGCAACTTGCTTTTATTTCTTTACACAGGAAGGTATAGGAACCTAATTGAAAGAGCTTTAAGAGCTAGGCTGGTCTATGGGAGCCCTAATATGAATAGAGCAGTTAGCTTTGAATACATGAACCGCCAGTTAGTATGGAATGAATTCTCGGAGATGTTATTGTTACTTCTTCCTCTTCTAAACTCATCCTCTATGAAAAAACTTCTTAGTCCATTTTCCAAAGATAAATCATCAAGTTCAAAAGAGGATGACCTTACTTGCCCCATTTGCCAGGCCAGTCCAACCGTTCCATTTCTCGCTCTTCCATGTGAGCACAGATACTGTTATTACTGCCTTAGGACGCGGTGTGCTGCTGTCCCAGCTTTCAGATGTTCCAGATGCAATGAGCCCGTGGTCGCAATGCAGCGACATGTTAGCGAGCCAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

338

Amino Acids

38.7

Weight (kDa)

9.44

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex2_Pex12	PF04757	56 - 261	1.7e-39	Pex2 / Pex12 amino terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	414
AccII	CGCG	1 cut(s)	925
AciI	CCGC	4 cut(s)	152, 283, 706, 925
AcsI	RAATTY	1 cut(s)	725
AfiI	CCNNNNNNNGG	2 cut(s)	314, 496
AflIII	ACRYGT	1 cut(s)	991
AgsI	TTSAA	6 cut(s)	170, 187, 239, 632, 695, 822
AjnI	CCWGG	4 cut(s)	223, 313, 397, 852
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	6 cut(s)	421, 572, 638, 647, 690, 944
AluI	AGCT	6 cut(s)	421, 572, 638, 647, 690, 944
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	903
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	855
ApeKI	GCWGC	3 cut(s)	572, 932, 985
ApoI	RAATTY	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	917
BanII	GRGCYC	3 cut(s)	466, 668, 972
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	2 cut(s)	48, 199
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	559, 919, 997
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	4 cut(s)	225, 315, 399, 854
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	648
BisI	GCNGC	3 cut(s)	573, 933, 986
BlsI	GCNGC	3 cut(s)	574, 934, 987
Bme1390I	CCNGG	4 cut(s)	225, 315, 399, 854
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	623, 665
BmrFI	CCNGG	4 cut(s)	225, 315, 399, 854
BmsI	GCATC	3 cut(s)	139, 247, 950
BpiI	GAAGAC	2 cut(s)	48, 199
BpmI	CTGGAG	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	972
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 496
Bse1I	ACTGG	3 cut(s)	106, 709, 858
Bse21I	CCTNAGG	1 cut(s)	917
Bse3DI	GCAATG	2 cut(s)	970, 987
BseBI	CCWGG	4 cut(s)	225, 315, 399, 854
BseDI	CCNNGG	1 cut(s)	972
BseGI	GGATG	2 cut(s)	767, 835
BseLI	CCNNNNNNNGG	2 cut(s)	314, 496
BseMI	GCAATG	2 cut(s)	970, 987
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	3 cut(s)	106, 709, 858
BseRI	GAGGAG	1 cut(s)	543
BseXI	GCAGC	3 cut(s)	559, 919, 997
BseYI	CCCAGC	1 cut(s)	940
Bsh1236I	CGCG	1 cut(s)	925
BshFI	GGCC	1 cut(s)	857
BsiHKAI	GWGCWC	1 cut(s)	897
BsiHKCI	CYCGRG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	2 cut(s)	314, 496
BsmAI	GTCTC	1 cut(s)	339
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	923
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	857
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	4 cut(s)	466, 668, 897, 972
BspACI	CCGC	4 cut(s)	152, 283, 706, 925
BspANI	GGCC	1 cut(s)	857
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	925
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	623, 665
BspQI	GCTCTTC	1 cut(s)	888
BsrDI	GCAATG	2 cut(s)	970, 987
BsrI	ACTGG	3 cut(s)	106, 709, 858
BssECI	CCNNGG	1 cut(s)	972
BssSI	CACGAG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	4 cut(s)	225, 315, 399, 854
Bst4CI	ACNGT	5 cut(s)	195, 409, 442, 868, 905
Bst6I	CTCTTC	2 cut(s)	762, 888
BstC8I	GCNNGC	3 cut(s)	36, 354, 1001
BstDEI	CTNAG	3 cut(s)	335, 788, 917
BstDSI	CCRYGG	1 cut(s)	972
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	767, 835
BstFNI	CGCG	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 229, 362, 530, 644, 849, 941
BstNI	CCWGG	4 cut(s)	225, 315, 399, 854
BstNSI	RCATGY	1 cut(s)	995
BstSCI	CCNGG	4 cut(s)	223, 313, 397, 852
BstUI	CGCG	1 cut(s)	925
BstV1I	GCAGC	3 cut(s)	559, 919, 997
BstV2I	GAAGAC	2 cut(s)	48, 199
Bsu36I	CCTNAGG	1 cut(s)	917
BsuRI	GGCC	1 cut(s)	857
BtgI	CCRYGG	1 cut(s)	972
BtsCI	GGATG	2 cut(s)	767, 835
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	3 cut(s)	36, 354, 1001
CaiI	CAGNNNCTG	1 cut(s)	903
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	2 cut(s)	53, 931
CviAII	CATG	6 cut(s)	181, 328, 534, 700, 888, 992
DdeI	CTNAG	3 cut(s)	335, 788, 917
Eam1104I	CTCTTC	2 cut(s)	762, 888
EarI	CTCTTC	2 cut(s)	762, 888
Eco24I	GRGCYC	3 cut(s)	466, 668, 972
Eco32I	GATATC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	917
Eco88I	CYCGRG	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	4 cut(s)	223, 313, 397, 852
EcoRV	GATATC	1 cut(s)	129
EcoT38I	GRGCYC	3 cut(s)	466, 668, 972
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	6 cut(s)	184, 331, 537, 703, 891, 995
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	6 cut(s)	180, 327, 533, 699, 887, 991
FauI	CCCGC	1 cut(s)	145
FauNDI	CATATG	1 cut(s)	458
Fnu4HI	GCNGC	3 cut(s)	573, 933, 986
FokI	GGATG	2 cut(s)	754, 842
FriOI	GRGCYC	3 cut(s)	466, 668, 972
Fsp4HI	GCNGC	3 cut(s)	573, 933, 986
FspBI	CTAG	1 cut(s)	648
FspI	TGCGCA	1 cut(s)	414
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	3 cut(s)	573, 933, 986
GsaI	CCCAGC	1 cut(s)	944
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	857
HgaI	GACGC	2 cut(s)	53, 931
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	6 cut(s)	184, 331, 537, 703, 891, 995
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	4 cut(s)	318, 331, 503, 538
HpaI	GTTAAC	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	6 cut(s)	336, 380, 508, 543, 733, 950
Hpy188III	TCNNGA	3 cut(s)	132, 328, 957
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	5 cut(s)	150, 181, 386, 551, 606
HpyCH4III	ACNGT	5 cut(s)	195, 409, 442, 868, 905
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	3 cut(s)	472, 963, 985
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 229, 362, 530, 644, 849, 941
HpyF3I	CTNAG	3 cut(s)	335, 788, 917
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	6 cut(s)	184, 331, 537, 703, 891, 995
HspAI	GCGC	1 cut(s)	413
KspAI	GTTAAC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	2 cut(s)	530, 663
Lsp1109I	GCAGC	3 cut(s)	559, 919, 997
LweI	GCATC	3 cut(s)	139, 247, 950
MaeI	CTAG	1 cut(s)	648
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	1 cut(s)	744
MboII	GAAGA	5 cut(s)	53, 199, 743, 749, 875
MhlI	GDGCHC	4 cut(s)	466, 668, 897, 972
MluCI	AATT	5 cut(s)	120, 143, 291, 627, 725
MmeI	TCCRAC	1 cut(s)	887
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	4 cut(s)	138, 201, 215, 641
MslI	CAYNNNNRTG	1 cut(s)	170
MspR9I	CCNGG	4 cut(s)	225, 315, 399, 854
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	4 cut(s)	225, 315, 399, 854
MvnI	CGCG	1 cut(s)	925
MwoI	GCNNNNNNNGC	7 cut(s)	44, 229, 362, 530, 644, 849, 941
NdeI	CATATG	1 cut(s)	458
NlaIII	CATG	6 cut(s)	184, 331, 537, 703, 891, 995
NlaIV	GGNNCC	2 cut(s)	623, 665
NsbI	TGCGCA	1 cut(s)	414
NspI	RCATGY	1 cut(s)	995
PaeR7I	CTCGAG	1 cut(s)	266
PagI	TCATGA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	991
PciSI	GCTCTTC	1 cut(s)	888
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	4 cut(s)	318, 331, 503, 538
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	574, 934, 987
PpuMI	RGGWCCY	1 cut(s)	395
PscI	ACATGT	1 cut(s)	991
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	4 cut(s)	223, 313, 397, 852
PspFI	CCCAGC	1 cut(s)	940
PspGI	CCWGG	4 cut(s)	223, 313, 397, 852
PspN4I	GGNNCC	2 cut(s)	623, 665
PspPI	GGNCC	1 cut(s)	395
PspPPI	RGGWCCY	1 cut(s)	395
PspXI	VCTCGAGB	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	903
RseI	CAYNNNNRTG	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	4 cut(s)	138, 201, 215, 641
SatI	GCNGC	3 cut(s)	573, 933, 986
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	4 cut(s)	225, 315, 399, 854
SduI	GDGCHC	4 cut(s)	466, 668, 897, 972
SfaNI	GCATC	3 cut(s)	139, 247, 950
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	395
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	5 cut(s)	120, 143, 291, 627, 725
SsiI	CCGC	4 cut(s)	152, 283, 706, 925
SspMI	CTAG	1 cut(s)	648
StyD4I	CCNGG	4 cut(s)	223, 313, 397, 852
TaaI	ACNGT	5 cut(s)	195, 409, 442, 868, 905
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	3 cut(s)	125, 147, 267
TasI	AATT	5 cut(s)	120, 143, 291, 627, 725
TfiI	GAWTC	4 cut(s)	318, 331, 503, 538
Tru1I	TTAA	4 cut(s)	138, 201, 215, 641
Tru9I	TTAA	4 cut(s)	138, 201, 215, 641
TscAI	CASTG	1 cut(s)	525
TseI	GCWGC	3 cut(s)	572, 932, 985
TspDTI	ATGAA	7 cut(s)	233, 258, 344, 689, 716, 738, 791
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	725
XceI	RCATGY	1 cut(s)	995
XhoI	CTCGAG	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.