Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000068.1

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1287

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000068.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 443 bp

atgtcagccatgttgaaagaacagttagttaaggtcttctctttgatgaagccaggaatgttatttcaatatgaagcggaacttgatgctttcctcgagtttcttatctggcggttctcaatttgggtagataagcctaccccgggaatttctctcatgaacctgaggtatagagacgaacgtgcactggaagccagaggaaaagttaggacggggttggaaggacctggacttacagttgcacagaagctttggtattgtgttgccactgttggtggtcaatacatctgggcccgattgcaatcattctctgctttccgtaggtggggcgattctgaacagaggtcactggcacgaggagcgtggattctcatacaacgcatagaaggactttataaagctgcctcattttgcaacctgcttttatttctttacactggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

147

Amino Acids

16.97

Weight (kDa)

9.55

Isoelectric Point (pI)

25.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	426
AciI	CCGC	2 cut(s)	77, 112
AcsI	RAATTY	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	143, 325
AgsI	TTSAA	2 cut(s)	16, 68
AjnI	CCWGG	2 cut(s)	52, 226
AluBI	AGCT	2 cut(s)	250, 401
AluI	AGCT	2 cut(s)	250, 401
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	168
Alw44I	GTGCAC	1 cut(s)	183
Ama87I	CYCGRG	2 cut(s)	95, 142
AoxI	GGCC	1 cut(s)	291
ApaI	GGGCCC	1 cut(s)	295
ApaLI	GTGCAC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	224, 291, 292
AsuC2I	CCSGG	2 cut(s)	143, 144
AvaI	CYCGRG	2 cut(s)	95, 142
AvaII	GGWCC	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	164
BaeGI	GKGCMC	2 cut(s)	187, 295
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	388
BciT130I	CCWGG	2 cut(s)	54, 228
BcnI	CCSGG	2 cut(s)	143, 144
BcoDI	GTCTC	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	426
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	4 cut(s)	54, 143, 144, 228
Bme18I	GGWCC	1 cut(s)	224
BmeT110I	CYCGRG	2 cut(s)	95, 142
BmgT120I	GGNCC	3 cut(s)	224, 291, 292
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	4 cut(s)	54, 143, 144, 228
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	28
BpuMI	CCSGG	2 cut(s)	143, 144
BsaBI	GATNNNNATC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	141, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 325
Bse1I	ACTGG	3 cut(s)	192, 354, 442
Bse21I	CCTNAGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	54, 228
BseDI	CCNNGG	2 cut(s)	141, 142
BseJI	GATNNNNATC	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	143, 325
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	3 cut(s)	192, 354, 442
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	2 cut(s)	187, 295
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	2 cut(s)	95, 142
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	143, 325
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	2 cut(s)	95, 142
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	187, 295
BspACI	CCGC	2 cut(s)	77, 112
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	192, 354, 442
BssECI	CCNNGG	2 cut(s)	141, 142
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	54, 228
Bst4CI	ACNGT	3 cut(s)	24, 238, 271
BstDEI	CTNAG	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 359
BstNI	CCWGG	2 cut(s)	54, 228
BstSCI	CCNGG	4 cut(s)	52, 141, 142, 226
BstSLI	GKGCMC	2 cut(s)	187, 295
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	293
BtsIMutI	CAGTG	4 cut(s)	185, 267, 347, 435
BveI	ACCTGC	1 cut(s)	426
CciI	TCATGA	1 cut(s)	156
Cfr13I	GGNCC	3 cut(s)	224, 291, 292
Cfr9I	CCCGGG	1 cut(s)	142
CviAII	CATG	2 cut(s)	10, 157
CviJI	RGCY	7 cut(s)	8, 52, 136, 194, 250, 293, 401
CviKI_1	RGCY	7 cut(s)	8, 52, 136, 194, 250, 293, 401
DdeI	CTNAG	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	164
Eco88I	CYCGRG	2 cut(s)	95, 142
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	52, 226
EcoT38I	GRGCYC	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	2 cut(s)	13, 160
FaiI	YATR	7 cut(s)	11, 72, 158, 171, 374, 383, 396
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	2 cut(s)	9, 156
Fnu4HI	GCNGC	1 cut(s)	402
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	2 cut(s)	13, 160
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	332, 367
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	215, 380
HpyCH4III	ACNGT	3 cut(s)	24, 238, 271
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	185, 242, 301, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 359
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	13, 160
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	345
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	187, 295
MluCI	AATT	2 cut(s)	120, 147
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	104, 159, 191, 336, 350, 415
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	4 cut(s)	54, 143, 144, 228
MvaI	CCWGG	2 cut(s)	54, 228
MwoI	GCNNNNNNNGC	2 cut(s)	191, 359
NciI	CCSGG	2 cut(s)	143, 144
NlaIII	CATG	2 cut(s)	13, 160
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	345
PaeR7I	CTCGAG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	332, 367
PkrI	GCNGC	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	52, 226
PspGI	CCWGG	2 cut(s)	52, 226
PspN4I	GGNNCC	1 cut(s)	293
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	224, 291, 292
PspPPI	RGGWCCY	1 cut(s)	224
PspXI	VCTCGAGB	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	402
Sau96I	GGNCC	3 cut(s)	224, 291, 292
ScrFI	CCNGG	4 cut(s)	54, 143, 144, 228
SduI	GDGCHC	2 cut(s)	187, 295
SfaNI	GCATC	1 cut(s)	76
Sfr274I	CTCGAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	95
SmaI	CCCGGG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	120, 147
SsiI	CCGC	2 cut(s)	77, 112
StyD4I	CCNGG	4 cut(s)	52, 141, 142, 226
TaaI	ACNGT	3 cut(s)	24, 238, 271
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	120, 147
TfiI	GAWTC	2 cut(s)	332, 367
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	4 cut(s)	192, 274, 354, 442
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	3 cut(s)	62, 87, 173
TspGWI	ACGGA	1 cut(s)	308
TspMI	CCCGGG	1 cut(s)	142
TspRI	CASTG	4 cut(s)	192, 274, 354, 442
VneI	GTGCAC	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	95
XmaI	CCCGGG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.