Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Reverse (-)

22570232 .. 22575606

Gene Structure 5375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1189500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGTAGTAGCAGTAGTAGTAATGTTCGACCACCAGCACAAGACGCTTGGCTTCACGCTTACAAGTCCTTACATCCTCAGTGGCAATCCATCTCTCACTCCCACCAGTCAATAATCCCAATTTCAATATCTAGAGTTAACCAATTCGATGCTGGAAGGCTGGACATTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAGGTCTTCTCCTTAATGAAGCCAGGAATGCTATTTCAATATGAAGCAGAACTTGATGCCTTCCTCGAATTTCTTATCTGGCGGTTCTCAATTTGGGTGGATAAACCTACTCCAGGAATCGCTCTCATGAATCTGAGGTATAGAGACGAGCGTGCTGTGGAATCAAGAGGAAAAGTCAGAACGGGTTTGGAAGGACCTGGACTTACAGTTGCACAGAAGCTTTGGTATTGTGTTGCTACTGTTGGTGGTCAATACATATGGGCACGTGTGCAATCATTTTCTGCTTTCCGTAGGTGGGGCGATTCTGAACAGAGGTCAGTGGCACGAGGAGCATGGATTCTGATACAACGTATAGAAGGACTTTACAAAGCTGCCTCATTTGGCAACCTGCTTTTATTTCTTTACACAGGAAGGTATAGGAATCTAATTGAAAGAGTTTTAAGAGCTAGGCTGGTCTATGGAAGCCCTAATATGAACAGAGCAGTTAGCTTTGAGTACATGAACCGCCAGTTAGTATGGAATGAATTCTCGGAGATGTTATTGCTACTACTTCCTCTTCTAAACTCATCCTCTATGAAAAAACTTCTTAGTCCATTTTCGAAAGATAAATCATCGAGTTCAAAGGAGGATGACCTTACTTGCCCCATTTGCCAGTCCAGTCCAACCGTTCCCTTTCTCGCTCTTCCGTGCGAGCACAGATACTGTTATTACTGCCTTAGGACGCGGTGTGCTGCAGTCCCAGCTTTCCGATGTTCCAGATGCAACGAGGCCGTGGTTGCAATGCAGCGGCATGTTGGCCAGCCAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

338

Amino Acids

38.61

Weight (kDa)

9.54

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex2_Pex12	PF04757	56 - 261	6.6e-39	Pex2 / Pex12 amino terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	597
AccII	CGCG	1 cut(s)	925
AciI	CCGC	4 cut(s)	283, 706, 925, 988
AcoI	YGGCCR	1 cut(s)	997
AcsI	RAATTY	2 cut(s)	269, 725
AcvI	CACGTG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	2 cut(s)	314, 496
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	6 cut(s)	126, 170, 187, 239, 632, 822
AjnI	CCWGG	3 cut(s)	223, 313, 397
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	5 cut(s)	421, 572, 647, 690, 944
AluI	AGCT	5 cut(s)	421, 572, 647, 690, 944
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	903
AoxI	GGCC	2 cut(s)	969, 997
ApeKI	GCWGC	3 cut(s)	572, 932, 985
ApoI	RAATTY	2 cut(s)	269, 725
Asp700I	GAANNNNTTC	1 cut(s)	725
AspS9I	GGNCC	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	800
AvaII	GGWCC	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	917
BaeGI	GKGCMC	1 cut(s)	466
BalI	TGGCCA	1 cut(s)	999
BauI	CACGAG	1 cut(s)	525
BbrPI	CACGTG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	559, 919, 997
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	956
BciT130I	CCWGG	3 cut(s)	225, 315, 399
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	2 cut(s)	132, 648
BfmI	CTRYAG	1 cut(s)	933
BfuAI	ACCTGC	1 cut(s)	597
BisI	GCNGC	4 cut(s)	573, 933, 986, 989
BlsI	GCNGC	4 cut(s)	574, 934, 987, 990
Bme1390I	CCNGG	3 cut(s)	225, 315, 399
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmrFI	CCNGG	3 cut(s)	225, 315, 399
BmsI	GCATC	3 cut(s)	139, 247, 950
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	800
BsaAI	YACGTR	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	972
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 496
Bse1I	ACTGG	4 cut(s)	106, 709, 853, 858
Bse21I	CCTNAGG	1 cut(s)	917
Bse3DI	GCAATG	1 cut(s)	987
BseBI	CCWGG	3 cut(s)	225, 315, 399
BseDI	CCNNGG	1 cut(s)	972
BseGI	GGATG	3 cut(s)	73, 767, 835
BseLI	CCNNNNNNNGG	2 cut(s)	314, 496
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	2 cut(s)	92, 326
BseNI	ACTGG	4 cut(s)	106, 709, 853, 858
BseRI	GAGGAG	1 cut(s)	543
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	3 cut(s)	559, 919, 997
BseYI	CCCAGC	1 cut(s)	940
Bsh1236I	CGCG	1 cut(s)	925
BshFI	GGCC	2 cut(s)	971, 999
BsiHKAI	GWGCWC	1 cut(s)	897
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	2 cut(s)	314, 496
BsmAI	GTCTC	1 cut(s)	339
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	923
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	971, 999
Bsp119I	TTCGAA	1 cut(s)	800
Bsp1286I	GDGCHC	2 cut(s)	466, 897
BspACI	CCGC	4 cut(s)	283, 706, 925, 988
BspANI	GGCC	2 cut(s)	971, 999
BspCNI	CTCAG	2 cut(s)	91, 327
BspFNI	CGCG	1 cut(s)	925
BspHI	TCATGA	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	937
BspMI	ACCTGC	1 cut(s)	597
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	987
BsrI	ACTGG	4 cut(s)	106, 709, 853, 858
BssECI	CCNNGG	1 cut(s)	972
BssSI	CACGAG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	3 cut(s)	225, 315, 399
Bst4CI	ACNGT	5 cut(s)	195, 409, 442, 868, 905
Bst6I	CTCTTC	2 cut(s)	762, 888
BstBAI	YACGTR	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	800
BstC8I	GCNNGC	3 cut(s)	354, 893, 1001
BstDEI	CTNAG	4 cut(s)	78, 335, 788, 917
BstDSI	CCRYGG	1 cut(s)	972
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	73, 767, 835
BstFNI	CGCG	1 cut(s)	925
BstMAI	GTCTC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 229, 530, 849, 941, 977
BstNI	CCWGG	3 cut(s)	225, 315, 399
BstNSI	RCATGY	1 cut(s)	995
BstSCI	CCNGG	3 cut(s)	223, 313, 397
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	925
BstV1I	GCAGC	3 cut(s)	559, 919, 997
BstV2I	GAAGAC	1 cut(s)	199
Bsu36I	CCTNAGG	1 cut(s)	917
BsuRI	GGCC	2 cut(s)	971, 999
BtgI	CCRYGG	1 cut(s)	972
BtsCI	GGATG	3 cut(s)	73, 767, 835
BtsIMutI	CAGTG	2 cut(s)	86, 525
BveI	ACCTGC	1 cut(s)	597
Cac8I	GCNNGC	3 cut(s)	354, 893, 1001
CaiI	CAGNNNCTG	1 cut(s)	903
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	2 cut(s)	53, 931
Csp6I	GTAC	1 cut(s)	697
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	5 cut(s)	181, 328, 534, 700, 992
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	4 cut(s)	78, 335, 788, 917
EaeI	YGGCCR	1 cut(s)	997
Eam1104I	CTCTTC	2 cut(s)	762, 888
EarI	CTCTTC	2 cut(s)	762, 888
Eco47I	GGWCC	1 cut(s)	395
Eco72I	CACGTG	1 cut(s)	467
Eco81I	CCTNAGG	1 cut(s)	917
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	3 cut(s)	223, 313, 397
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	5 cut(s)	184, 331, 537, 703, 995
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	5 cut(s)	180, 327, 533, 699, 991
FauNDI	CATATG	1 cut(s)	458
Fnu4HI	GCNGC	4 cut(s)	573, 933, 986, 989
FokI	GGATG	3 cut(s)	60, 754, 842
Fsp4HI	GCNGC	4 cut(s)	573, 933, 986, 989
FspBI	CTAG	2 cut(s)	132, 648
GluI	GCNGC	4 cut(s)	573, 933, 986, 989
GsaI	CCCAGC	1 cut(s)	944
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	971, 999
HgaI	GACGC	2 cut(s)	53, 931
Hin1II	CATG	5 cut(s)	184, 331, 537, 703, 995
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	6 cut(s)	318, 331, 362, 503, 538, 622
HpaI	GTTAAC	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	6 cut(s)	336, 380, 508, 543, 733, 950
Hpy188III	TCNNGA	4 cut(s)	132, 328, 366, 957
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	6 cut(s)	150, 181, 271, 386, 551, 606
HpyCH4III	ACNGT	5 cut(s)	195, 409, 442, 868, 905
HpyCH4IV	ACGT	2 cut(s)	466, 550
HpyCH4V	TGCA	6 cut(s)	413, 472, 935, 963, 980, 985
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 229, 530, 849, 941, 977
HpyF3I	CTNAG	4 cut(s)	78, 335, 788, 917
HpySE526I	ACGT	2 cut(s)	466, 550
Hsp92II	CATG	5 cut(s)	184, 331, 537, 703, 995
KspAI	GTTAAC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	530
Lsp1109I	GCAGC	3 cut(s)	559, 919, 997
LweI	GCATC	3 cut(s)	139, 247, 950
MaeI	CTAG	2 cut(s)	132, 648
MaeII	ACGT	2 cut(s)	466, 550
MboII	GAAGA	3 cut(s)	199, 749, 875
MhlI	GDGCHC	2 cut(s)	466, 897
MlsI	TGGCCA	1 cut(s)	999
MluCI	AATT	6 cut(s)	120, 143, 269, 291, 627, 725
MluNI	TGGCCA	1 cut(s)	999
MmeI	TCCRAC	1 cut(s)	887
Mox20I	TGGCCA	1 cut(s)	999
MroXI	GAANNNNTTC	1 cut(s)	725
MscI	TGGCCA	1 cut(s)	999
MseI	TTAA	4 cut(s)	138, 201, 215, 641
MslI	CAYNNNNRTG	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	999
MspA1I	CMGCKG	1 cut(s)	988
MspR9I	CCNGG	3 cut(s)	225, 315, 399
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	3 cut(s)	225, 315, 399
MvnI	CGCG	1 cut(s)	925
MwoI	GCNNNNNNNGC	6 cut(s)	44, 229, 530, 849, 941, 977
NdeI	CATATG	1 cut(s)	458
NlaIII	CATG	5 cut(s)	184, 331, 537, 703, 995
NspI	RCATGY	1 cut(s)	995
NspV	TTCGAA	1 cut(s)	800
PagI	TCATGA	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	888
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	6 cut(s)	318, 331, 362, 503, 538, 622
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	4 cut(s)	574, 934, 987, 990
PmaCI	CACGTG	1 cut(s)	467
PmlI	CACGTG	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	3 cut(s)	223, 313, 397
PspCI	CACGTG	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	940
PspGI	CCWGG	3 cut(s)	223, 313, 397
PspPI	GGNCC	1 cut(s)	395
PspPPI	RGGWCCY	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	937
PstNI	CAGNNNCTG	1 cut(s)	903
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	4 cut(s)	138, 201, 215, 641
SatI	GCNGC	4 cut(s)	573, 933, 986, 989
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	3 cut(s)	225, 315, 399
SduI	GDGCHC	2 cut(s)	466, 897
SfaNI	GCATC	3 cut(s)	139, 247, 950
SfcI	CTRYAG	1 cut(s)	933
SfuI	TTCGAA	1 cut(s)	800
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	6 cut(s)	120, 143, 269, 291, 627, 725
SsiI	CCGC	4 cut(s)	283, 706, 925, 988
SspMI	CTAG	2 cut(s)	132, 648
StyD4I	CCNGG	3 cut(s)	223, 313, 397
TaaI	ACNGT	5 cut(s)	195, 409, 442, 868, 905
TaiI	ACGT	2 cut(s)	469, 553
TaqI	TCGA	5 cut(s)	28, 147, 267, 800, 815
TasI	AATT	6 cut(s)	120, 143, 269, 291, 627, 725
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	1 cut(s)	991
TfiI	GAWTC	6 cut(s)	318, 331, 362, 503, 538, 622
Tru1I	TTAA	4 cut(s)	138, 201, 215, 641
Tru9I	TTAA	4 cut(s)	138, 201, 215, 641
TscAI	CASTG	2 cut(s)	86, 525
TseI	GCWGC	3 cut(s)	572, 932, 985
TspDTI	ATGAA	7 cut(s)	233, 258, 344, 689, 716, 738, 791
TspGWI	ACGGA	2 cut(s)	479, 876
TspRI	CASTG	2 cut(s)	86, 525
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	312
XapI	RAATTY	2 cut(s)	269, 725
XbaI	TCTAGA	1 cut(s)	131
XceI	RCATGY	1 cut(s)	995
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	132, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.