Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Reverse (-)

4596877 .. 4601795

Gene Structure 4919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G064400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGTGGTAGCAGTAATTTTAGACCACCAGCAGAAGACGCCTGGGTTCACACTTACCAGACCTTACTTCCTCAATGGCAATCCCTCTCTCACTCCCGCCAGTCAATAATCCCAATTTCCATATCTAGAGTTAACCAATTCGATGCGGGAAGACTGGACATTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTCAAGGTCTTCTCGTTAATGAAGCCAGGAATGTTATTTCAATATGAAGCGGAACTTGATGCTTTCCTCGAGTTTCTTATCTGGCGGTTCTCGATTTGGGTAGATAAGCCTACTCCGGGAATTGCTCTCATGAATCTGAGGTATAGAAATGAACGTGCACTGGAAGCAAGAGGAAAAGTCAGAACGGGTTTGGAAGGACCTGGACTTACAGTTGCACAGAAGCTTTGGTATTGTGTTGCCACTGTTGGTGGTCAATATATCTGGGCTCGTTTGCAATCGTTCTCTGCCTTCCGCAGGTGGGGTGATTCTGAACAGAGGTCAGTGGCACGAGGAGCATGGATTCTGATACAGCGTATAGAAGGACTTTACAAAGCTGCCTCATTTGGGAACCTTCTTTTATTTCTTTACACTGGAAGGTATAGGAATCTAATTGAAAGAGCTTTAAAAGCTAGGCTGGTCTATGGGAGCCCTAATATGAACCGAGCAGTTAGCTTTGAGTACATGAACCGCCAGTTAGTATGGAATGAATTCTCGGAGATGTTATTGTTGCTTCTTCCTCTTCTAAACTCATCCTCTATGAAAAACCTTCTTCGCCCGTTTTCCAAGGATAAATCATCAAGTTCAAAAGAGGATGACTTTACTTGCCCCATTTGCCAGGCCAGTCCAACAGTTCCATTTCTTGCTCTTCCCTGTCAGCACAGATACTGTTACTACTGCCTTAGGACACGATGTGCTGCAGTCCCGGCTTTCAGATGTTCCAGATGCAATGAGCCCATCGTCGCCATGCAGCGGCATGTTAACGAGCCAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

336

Amino Acids

38.61

Weight (kDa)

9.55

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	477
Acc36I	ACCTGC	1 cut(s)	477
AciI	CCGC	7 cut(s)	97, 146, 242, 277, 484, 700, 982
AcsI	RAATTY	1 cut(s)	719
AcyI	GRCGYC	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	923
AfaI	GTAC	1 cut(s)	692
AfiI	CCNNNNNNNGG	5 cut(s)	308, 486, 490, 576, 981
AgsI	TTSAA	5 cut(s)	164, 181, 233, 626, 816
AjnI	CCWGG	4 cut(s)	41, 217, 391, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	415, 566, 632, 641, 684
AluI	AGCT	5 cut(s)	415, 566, 632, 641, 684
Alw21I	GWGCWC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	897
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	849
ApaLI	GTGCAC	1 cut(s)	348
ApeKI	GCWGC	3 cut(s)	566, 926, 979
ApoI	RAATTY	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	719
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	2 cut(s)	309, 935
AsuHPI	GGTGA	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	911
BaeGI	GKGCMC	1 cut(s)	352
BanII	GRGCYC	3 cut(s)	460, 662, 966
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	3 cut(s)	42, 157, 193
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	553, 913, 991
BccI	CCATC	1 cut(s)	974
BciT130I	CCWGG	4 cut(s)	43, 219, 393, 848
BcnI	CCSGG	2 cut(s)	309, 935
BfaI	CTAG	2 cut(s)	126, 642
BfmI	CTRYAG	1 cut(s)	927
BfuAI	ACCTGC	1 cut(s)	477
BisI	GCNGC	4 cut(s)	567, 927, 980, 983
BlsI	GCNGC	4 cut(s)	568, 928, 981, 984
Bme1390I	CCNGG	6 cut(s)	43, 219, 309, 393, 848, 935
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	581, 659
BmrFI	CCNGG	6 cut(s)	43, 219, 309, 393, 848, 935
BmsI	GCATC	3 cut(s)	133, 241, 944
BpiI	GAAGAC	3 cut(s)	42, 157, 193
BpuMI	CCSGG	2 cut(s)	309, 935
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	42, 795
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 486, 490, 576, 981
Bse1I	ACTGG	6 cut(s)	100, 159, 357, 607, 703, 852
Bse21I	CCTNAGG	1 cut(s)	911
Bse3DI	GCAATG	1 cut(s)	964
BseBI	CCWGG	4 cut(s)	43, 219, 393, 848
BseDI	CCNNGG	2 cut(s)	42, 795
BseGI	GGATG	2 cut(s)	761, 829
BseLI	CCNNNNNNNGG	5 cut(s)	308, 486, 490, 576, 981
BseMI	GCAATG	1 cut(s)	964
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	6 cut(s)	100, 159, 357, 607, 703, 852
BseRI	GAGGAG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	3 cut(s)	553, 913, 991
BshFI	GGCC	1 cut(s)	851
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	308, 935
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	5 cut(s)	308, 486, 490, 576, 981
BsmFI	GGGAC	1 cut(s)	917
BsnI	GGCC	1 cut(s)	851
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	4 cut(s)	352, 460, 662, 966
BspACI	CCGC	7 cut(s)	97, 146, 242, 277, 484, 700, 982
BspANI	GGCC	1 cut(s)	851
BspCNI	CTCAG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	581, 659
BspMAI	CTGCAG	1 cut(s)	931
BspMI	ACCTGC	1 cut(s)	477
BspQI	GCTCTTC	1 cut(s)	882
BsrDI	GCAATG	1 cut(s)	964
BsrI	ACTGG	6 cut(s)	100, 159, 357, 607, 703, 852
BssECI	CCNNGG	2 cut(s)	42, 795
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	795
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	4 cut(s)	43, 219, 393, 848
Bst4CI	ACNGT	5 cut(s)	189, 403, 436, 862, 899
Bst6I	CTCTTC	2 cut(s)	756, 882
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	329, 911
BstENI	CCTNNNNNAGG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	761, 829
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 356, 524, 638, 843, 935
BstNI	CCWGG	4 cut(s)	43, 219, 393, 848
BstNSI	RCATGY	1 cut(s)	989
BstSCI	CCNGG	6 cut(s)	41, 217, 307, 391, 846, 933
BstSFI	CTRYAG	1 cut(s)	927
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	553, 913, 991
BstV2I	GAAGAC	3 cut(s)	42, 157, 193
Bsu36I	CCTNAGG	1 cut(s)	911
BsuRI	GGCC	1 cut(s)	851
BtsCI	GGATG	2 cut(s)	761, 829
BtsIMutI	CAGTG	4 cut(s)	350, 432, 519, 600
BveI	ACCTGC	1 cut(s)	477
CaiI	CAGNNNCTG	1 cut(s)	897
CciI	TCATGA	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	691
CviAII	CATG	6 cut(s)	175, 322, 528, 694, 976, 986
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	2 cut(s)	329, 911
DraI	TTTAAA	1 cut(s)	636
DraIII	CACNNNGTG	1 cut(s)	923
Eam1104I	CTCTTC	2 cut(s)	756, 882
EarI	CTCTTC	2 cut(s)	756, 882
Eco130I	CCWWGG	1 cut(s)	795
Eco24I	GRGCYC	3 cut(s)	460, 662, 966
Eco47I	GGWCC	1 cut(s)	389
Eco81I	CCTNAGG	1 cut(s)	911
Eco88I	CYCGRG	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	719
EcoRII	CCWGG	4 cut(s)	41, 217, 391, 846
EcoT14I	CCWWGG	1 cut(s)	795
EcoT38I	GRGCYC	3 cut(s)	460, 662, 966
ErhI	CCWWGG	1 cut(s)	795
FaeI	CATG	6 cut(s)	178, 325, 531, 697, 979, 989
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	6 cut(s)	174, 321, 527, 693, 975, 985
FauI	CCCGC	2 cut(s)	104, 139
Fnu4HI	GCNGC	4 cut(s)	567, 927, 980, 983
FokI	GGATG	2 cut(s)	748, 836
FriOI	GRGCYC	3 cut(s)	460, 662, 966
Fsp4HI	GCNGC	4 cut(s)	567, 927, 980, 983
FspBI	CTAG	2 cut(s)	126, 642
GluI	GCNGC	4 cut(s)	567, 927, 980, 983
HaeIII	GGCC	1 cut(s)	851
HapII	CCGG	2 cut(s)	308, 935
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	178, 325, 531, 697, 979, 989
HincII	GTYRAC	2 cut(s)	133, 991
HindII	GTYRAC	2 cut(s)	133, 991
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	4 cut(s)	325, 497, 532, 616
HpaI	GTTAAC	2 cut(s)	133, 991
HpaII	CCGG	2 cut(s)	308, 935
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	4 cut(s)	49, 133, 350, 991
Hpy188I	TCNGA	6 cut(s)	330, 374, 502, 537, 727, 944
Hpy188III	TCNNGA	4 cut(s)	126, 283, 322, 951
Hpy8I	GTNNAC	4 cut(s)	49, 133, 350, 991
Hpy99I	CGWCG	1 cut(s)	974
HpyAV	CCTTC	6 cut(s)	380, 490, 545, 593, 600, 788
HpyCH4III	ACNGT	5 cut(s)	189, 403, 436, 862, 899
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	350, 407, 466, 929, 957, 979
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 356, 524, 638, 843, 935
HpyF3I	CTNAG	2 cut(s)	329, 911
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	6 cut(s)	178, 325, 531, 697, 979, 989
KspAI	GTTAAC	2 cut(s)	133, 991
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	2 cut(s)	524, 657
Lsp1109I	GCAGC	3 cut(s)	553, 913, 991
LweI	GCATC	3 cut(s)	133, 241, 944
MaeI	CTAG	2 cut(s)	126, 642
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	899
MboII	GAAGA	7 cut(s)	47, 162, 193, 737, 743, 773, 869
MhlI	GDGCHC	4 cut(s)	352, 460, 662, 966
MluCI	AATT	6 cut(s)	16, 114, 137, 312, 621, 719
MmeI	TCCRAC	1 cut(s)	881
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	4 cut(s)	132, 209, 635, 990
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	982
MspI	CCGG	2 cut(s)	308, 935
MspR9I	CCNGG	6 cut(s)	43, 219, 309, 393, 848, 935
MvaI	CCWGG	4 cut(s)	43, 219, 393, 848
MwoI	GCNNNNNNNGC	6 cut(s)	38, 356, 524, 638, 843, 935
NciI	CCSGG	2 cut(s)	309, 935
NlaIII	CATG	6 cut(s)	178, 325, 531, 697, 979, 989
NlaIV	GGNNCC	2 cut(s)	581, 659
NspI	RCATGY	1 cut(s)	989
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	321
PaqCI	CACCTGC	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	882
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	4 cut(s)	325, 497, 532, 616
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	568, 928, 981, 984
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
Psp6I	CCWGG	4 cut(s)	41, 217, 391, 846
PspGI	CCWGG	4 cut(s)	41, 217, 391, 846
PspN4I	GGNNCC	2 cut(s)	581, 659
PspPI	GGNCC	1 cut(s)	389
PspPPI	RGGWCCY	1 cut(s)	389
PspXI	VCTCGAGB	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	897
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	4 cut(s)	132, 209, 635, 990
SatI	GCNGC	4 cut(s)	567, 927, 980, 983
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	6 cut(s)	43, 219, 309, 393, 848, 935
SduI	GDGCHC	4 cut(s)	352, 460, 662, 966
SfaNI	GCATC	3 cut(s)	133, 241, 944
SfcI	CTRYAG	1 cut(s)	927
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	6 cut(s)	16, 114, 137, 312, 621, 719
SsiI	CCGC	7 cut(s)	97, 146, 242, 277, 484, 700, 982
SspMI	CTAG	2 cut(s)	126, 642
StyD4I	CCNGG	6 cut(s)	41, 217, 307, 391, 846, 933
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	5 cut(s)	189, 403, 436, 862, 899
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	3 cut(s)	141, 261, 284
TasI	AATT	6 cut(s)	16, 114, 137, 312, 621, 719
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	1 cut(s)	985
TfiI	GAWTC	4 cut(s)	325, 497, 532, 616
Tru1I	TTAA	4 cut(s)	132, 209, 635, 990
Tru9I	TTAA	4 cut(s)	132, 209, 635, 990
TscAI	CASTG	4 cut(s)	357, 439, 519, 607
TseI	GCWGC	3 cut(s)	566, 926, 979
TspDTI	ATGAA	8 cut(s)	227, 252, 338, 357, 683, 710, 732, 785
TspRI	CASTG	4 cut(s)	357, 439, 519, 607
VneI	GTGCAC	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	484
XapI	RAATTY	1 cut(s)	719
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	989
XhoI	CTCGAG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	2 cut(s)	126, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.