Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Forward (+)

25003441 .. 25008516

Gene Structure 5076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAGCAGTAGCAGCAGCAGCAGCAATTCTAGACCGCCAGCAGAAGACGCTTGGATTCACGCTTACAAGACCTTAATTCCCCAATGGCAACACCTCTCACTTTCTCTATCCCACTCTCACCAGTCATTAATTCCAATATCGATATCTAGAGTAAACCAATTCGATGCGGCAAGACTGGACATTGAAATGTCAGCCATGTTGAAAGAACAGTTAGTTAAGGTCTTCTCCTTGATGAAGCCAGGAATGTTATTTCAATATGAAGCAGAACTTGATGCTTTCCTCGAGTTTCTTATCTGGCGGTTCTCAATTTGGGTAGATAAGCCTACTCCAGGAATTTCTCTCATGAACCTTAGATATAGAGACGAACGTGCACTGGAAGCGAGAGGAAAAGTCAGGACAGGATTGGAAGGACCTGGACTTACAGTTGCACAAAAGCTTTGGTATTGTGTTGCCACTGTCGGTGGTCAATACATCTGGGCACGGTTGCAATCGTTCTCTGCTTTTCGTAGGTGGGGCGATTCTGAACAGAGGTCACTAGCACGAGGAGCGTGGATTATGATACAACGCATAGAAGGACTCTATAAAGCTGCCTCATTTTGCAACCTGCTTTTATTTCTCTATACAGGAAGGTATAGGACTCTTATTGAAAGAGCTCTAAGAGCTAGGCTGGTTTATGGGAGCCCTATTATGAACCGAGCAGTTAGCTTTGAGTACATGAACCGCCAGTTAGTATGGAATGAATTCTCGGAGATGTTATTGTTGCTTCTTCCTCTTCTTAACTCATCATCCGTGAAAAACTTTCTTCGCCTGTTTTCCAAGGATAAATCTTCAAGTTCAACAGATGATGACTCTGCTTGCCCCATCTGCCAGGCCAGTCCAACCGTTCCATTTTTCGCTCTCCCCTGTCAGCACAGATACTGCTACTACTGCCTAAGAACACGGTGTGCAGCAGTCCCGTCCTTCAGATGTTCCAGATGTAATGAACCAGTCGTTGCCATGCAGCGGCAGGCCAACAATCCAAATCAAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

345

Amino Acids

39.49

Weight (kDa)

9.45

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex2_Pex12	PF04757	4 - 176	2e-31	Pex2 / Pex12 amino terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	612
AciI	CCGC	5 cut(s)	35, 167, 298, 721, 1003
AcsI	RAATTY	2 cut(s)	333, 740
AcuI	CTGAAG	1 cut(s)	946
AdeI	CACNNNGTG	1 cut(s)	944
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	2 cut(s)	329, 1002
AgsI	TTSAA	6 cut(s)	185, 202, 254, 647, 831, 837
AjnI	CCWGG	4 cut(s)	238, 328, 412, 867
AluBI	AGCT	5 cut(s)	436, 587, 653, 662, 705
AluI	AGCT	5 cut(s)	436, 587, 653, 662, 705
Alw21I	GWGCWC	2 cut(s)	373, 655
Alw26I	GTCTC	1 cut(s)	354
Alw44I	GTGCAC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	918
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	870, 1008
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	7 cut(s)	12, 15, 18, 21, 587, 947, 1000
ApoI	RAATTY	2 cut(s)	333, 740
AseI	ATTAAT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	2 cut(s)	373, 481
BanII	GRGCYC	2 cut(s)	655, 683
BauI	CACGAG	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	51, 214
Bbv12I	GWGCWC	2 cut(s)	373, 655
BbvI	GCAGC	7 cut(s)	24, 27, 30, 33, 574, 959, 1012
BccI	CCATC	1 cut(s)	869
BciT130I	CCWGG	4 cut(s)	240, 330, 414, 869
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	4 cut(s)	30, 147, 536, 663
BfuAI	ACCTGC	1 cut(s)	612
BisI	GCNGC	9 cut(s)	13, 16, 19, 22, 168, 588, 948, 1001, 1004
BlsI	GCNGC	9 cut(s)	14, 17, 20, 23, 169, 589, 949, 1002, 1005
Bme1390I	CCNGG	4 cut(s)	240, 330, 414, 869
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	680
BmrFI	CCNGG	4 cut(s)	240, 330, 414, 869
BmsI	GCATC	2 cut(s)	154, 262
BpiI	GAAGAC	2 cut(s)	51, 214
BpmI	CTGGAG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	816
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 1002
Bse1I	ACTGG	6 cut(s)	121, 180, 378, 724, 873, 986
BseBI	CCWGG	4 cut(s)	240, 330, 414, 869
BseCI	ATCGAT	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	816
BseGI	GGATG	1 cut(s)	785
BseLI	CCNNNNNNNGG	2 cut(s)	329, 1002
BseNI	ACTGG	6 cut(s)	121, 180, 378, 724, 873, 986
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	2 cut(s)	373, 481
BseXI	GCAGC	7 cut(s)	24, 27, 30, 33, 574, 959, 1012
BsgI	GTGCAG	1 cut(s)	966
BshFI	GGCC	2 cut(s)	872, 1010
BshVI	ATCGAT	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	373, 655
BsiHKCI	CYCGRG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	2 cut(s)	329, 1002
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	938
BsnI	GGCC	2 cut(s)	872, 1010
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	4 cut(s)	373, 481, 655, 683
BspACI	CCGC	5 cut(s)	35, 167, 298, 721, 1003
BspANI	GGCC	2 cut(s)	872, 1010
BspDI	ATCGAT	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	680
BspMI	ACCTGC	1 cut(s)	612
BsrI	ACTGG	6 cut(s)	121, 180, 378, 724, 873, 986
BssECI	CCNNGG	1 cut(s)	816
BssSI	CACGAG	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	816
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	4 cut(s)	240, 330, 414, 869
Bst4CI	ACNGT	6 cut(s)	210, 424, 457, 483, 883, 942
Bst6I	CTCTTC	1 cut(s)	777
BstC8I	GCNNGC	3 cut(s)	39, 856, 1008
BstDEI	CTNAG	3 cut(s)	350, 656, 932
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	785
BstMAI	GTCTC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	9 cut(s)	12, 18, 21, 47, 377, 545, 659, 864, 927
BstNI	CCWGG	4 cut(s)	240, 330, 414, 869
BstSCI	CCNGG	4 cut(s)	238, 328, 412, 867
BstSLI	GKGCMC	2 cut(s)	373, 481
BstV1I	GCAGC	7 cut(s)	24, 27, 30, 33, 574, 959, 1012
BstV2I	GAAGAC	2 cut(s)	51, 214
Bsu15I	ATCGAT	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	872, 1010
BsuTUI	ATCGAT	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	785
BtsIMutI	CAGTG	2 cut(s)	371, 453
BveI	ACCTGC	1 cut(s)	612
Cac8I	GCNNGC	3 cut(s)	39, 856, 1008
CaiI	CAGNNNCTG	1 cut(s)	918
CciI	TCATGA	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	140
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	4 cut(s)	196, 343, 715, 997
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	3 cut(s)	350, 656, 932
DraIII	CACNNNGTG	1 cut(s)	944
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Ecl136II	GAGCTC	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	816
Eco24I	GRGCYC	2 cut(s)	655, 683
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	946
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	653
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	4 cut(s)	238, 328, 412, 867
EcoRV	GATATC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	2 cut(s)	655, 683
ErhI	CCWWGG	1 cut(s)	816
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	4 cut(s)	199, 346, 718, 1000
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	1 cut(s)	938
FatI	CATG	4 cut(s)	195, 342, 714, 996
Fnu4HI	GCNGC	9 cut(s)	13, 16, 19, 22, 168, 588, 948, 1001, 1004
FokI	GGATG	1 cut(s)	772
FriOI	GRGCYC	2 cut(s)	655, 683
Fsp4HI	GCNGC	9 cut(s)	13, 16, 19, 22, 168, 588, 948, 1001, 1004
FspBI	CTAG	4 cut(s)	30, 147, 536, 663
GluI	GCNGC	9 cut(s)	13, 16, 19, 22, 168, 588, 948, 1001, 1004
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	872, 1010
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	199, 346, 718, 1000
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	5 cut(s)	55, 518, 576, 637, 848
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	154, 371
Hpy188I	TCNGA	3 cut(s)	523, 748, 965
Hpy188III	TCNNGA	5 cut(s)	30, 147, 343, 394, 972
Hpy8I	GTNNAC	2 cut(s)	154, 371
HpyAV	CCTTC	4 cut(s)	401, 566, 621, 970
HpyCH4III	ACNGT	6 cut(s)	210, 424, 457, 483, 883, 942
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	6 cut(s)	371, 428, 487, 600, 947, 1000
HpyF10VI	GCNNNNNNNGC	9 cut(s)	12, 18, 21, 47, 377, 545, 659, 864, 927
HpyF3I	CTNAG	3 cut(s)	350, 656, 932
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	4 cut(s)	199, 346, 718, 1000
LmnI	GCTCC	2 cut(s)	545, 678
Lsp1109I	GCAGC	7 cut(s)	24, 27, 30, 33, 574, 959, 1012
LweI	GCATC	2 cut(s)	154, 262
MaeI	CTAG	4 cut(s)	30, 147, 536, 663
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	531
MboII	GAAGA	6 cut(s)	56, 214, 758, 764, 794, 819
MhlI	GDGCHC	4 cut(s)	373, 481, 655, 683
MluCI	AATT	7 cut(s)	25, 75, 129, 158, 306, 333, 740
MlyI	GAGTC	3 cut(s)	570, 631, 842
MmeI	TCCRAC	1 cut(s)	902
MnlI	CCTC	7 cut(s)	104, 290, 377, 522, 536, 601, 780
MroXI	GAANNNNTTC	1 cut(s)	740
MseI	TTAA	4 cut(s)	74, 128, 216, 777
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	1003
MspR9I	CCNGG	4 cut(s)	240, 330, 414, 869
MvaI	CCWGG	4 cut(s)	240, 330, 414, 869
MwoI	GCNNNNNNNGC	9 cut(s)	12, 18, 21, 47, 377, 545, 659, 864, 927
NlaIII	CATG	4 cut(s)	199, 346, 718, 1000
NlaIV	GGNNCC	1 cut(s)	680
NmuCI	GTSAC	1 cut(s)	531
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	2 cut(s)	55, 518
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	9 cut(s)	14, 17, 20, 23, 169, 589, 949, 1002, 1005
PleI	GAGTC	3 cut(s)	570, 631, 842
PpsI	GAGTC	3 cut(s)	570, 631, 842
PpuMI	RGGWCCY	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	655
Psp5II	RGGWCCY	1 cut(s)	410
Psp6I	CCWGG	4 cut(s)	238, 328, 412, 867
PspGI	CCWGG	4 cut(s)	238, 328, 412, 867
PspN4I	GGNNCC	1 cut(s)	680
PspPI	GGNCC	1 cut(s)	410
PspPPI	RGGWCCY	1 cut(s)	410
PspXI	VCTCGAGB	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	918
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	655
SaqAI	TTAA	4 cut(s)	74, 128, 216, 777
SatI	GCNGC	9 cut(s)	13, 16, 19, 22, 168, 588, 948, 1001, 1004
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	3 cut(s)	570, 631, 842
ScrFI	CCNGG	4 cut(s)	240, 330, 414, 869
SduI	GDGCHC	4 cut(s)	373, 481, 655, 683
SfaNI	GCATC	2 cut(s)	154, 262
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	7 cut(s)	25, 75, 129, 158, 306, 333, 740
SsiI	CCGC	5 cut(s)	35, 167, 298, 721, 1003
SspMI	CTAG	4 cut(s)	30, 147, 536, 663
SstI	GAGCTC	1 cut(s)	655
StyD4I	CCNGG	4 cut(s)	238, 328, 412, 867
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	6 cut(s)	210, 424, 457, 483, 883, 942
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	140, 162, 282
TasI	AATT	7 cut(s)	25, 75, 129, 158, 306, 333, 740
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	2 cut(s)	170, 1006
TfiI	GAWTC	2 cut(s)	55, 518
Tru1I	TTAA	4 cut(s)	74, 128, 216, 777
Tru9I	TTAA	4 cut(s)	74, 128, 216, 777
TscAI	CASTG	2 cut(s)	378, 460
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	7 cut(s)	12, 15, 18, 21, 587, 947, 1000
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	7 cut(s)	248, 273, 359, 704, 731, 753, 996
TspGWI	ACGGA	1 cut(s)	778
TspRI	CASTG	2 cut(s)	378, 460
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	128
XagI	CCTNNNNNAGG	1 cut(s)	327
XapI	RAATTY	2 cut(s)	333, 740
XbaI	TCTAGA	2 cut(s)	29, 146
XhoI	CTCGAG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	740
XspI	CTAG	4 cut(s)	30, 147, 536, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.