Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005771

Physical Location & Seq

Genomic Coordinates Forward (+)

30213705 .. 30217102

Gene Structure 3398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGGGAAGGAGAATGCTGTTTCTGGAAACTCTATACCAATCCATGGTCGCCCTGTAACTCGTGCTCTTGCCTCTGCTCTGCGTGCTTCTTCTAAGCTGATAACATCTTCTGAAGTGGCTGCTACAACACAGAACCAGGGACGGGTTCTTAGAGCAAAGAGTAAAAGAACAGCCTTGGATGAGAAGAAAGCCAATGCACCTAAGAAGCGAGCTGTTCTTAAGGATATCACTAATGTTACCTGCGAGAATTCTTACACAAGTTGCTTCAGTGTTGCGGTGGAGAATATCAAGCAGATAAAGAAGGGACGACAGAGTTCTTCTTCTTCCAAGGTGGCATCTTCTTCGGCTACTTCACAAGTTACAGATGCAAAGGTAGAAGTTGTGTCAAATTCAGCAGGAGCAAGCTTGTCTGTTTTTACAGATACAAGCTTAGGCACAAACGAAACATCCTATAGCATTATCGCAAAGCCAAGCTCCAGATCGCCTCCAAGACCCTTTGGGACAGTTGAGAGAAGTTGTGGTGGAGCAAGTAGCCCGAAATTCGTTGACATTGATTCAGATGACAAAGATCCTCTACTCTGTAGCCTTTATGCACCTGACATCTACTACAACCTGCGTGTTGCTGAGCTTAAACGAAGACCATTTCCTGATTTTATGGAGAAAACACAAAGAGATGTGACTGAGACAATGCGGGGAATTCTTGTTGATTGGCTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTTTACCTCACAGTGTATCTCATAGACTGGTTTCTCCATGGAAACTATGTGGAAAGACAGAGACTTCAATTGCTTGGCATCACTTGTATGCTCATTGCTTCGAAGTATGAGGAAATCCATGCGCCACGCATTGAGGAGTTCTGCTTCATCACGGATAACACTTATACAAGAGATCAGGTCCTGGAAATGGAGAGCCAAGTACTCAAGCATTTTAGCTTTCAAATTTACACCCCCACTTCAAAAACATTCCTCAGGAGATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCAAAGTCTGGAAATGGAGTTTCTGGCGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTCCTTCCTTCGATCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTAAACCAATCAAGCCACCCTTGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAAGCATCTGTCCACGCCTTGCAAGATTTACAGCTTAACACCAAAGGATGTTCCTTAAACTCTATACGCATGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTATTCAGTTCTGGAGAGCTACCGGACAAGCTATTCATCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010374 GO:0010389 GO:0010440 GO:0010444 GO:0010564 GO:0022402 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901576 GO:1901987 GO:1901990 GO:1902749 GO:1905392 GO:1905393 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

461

Amino Acids

51.64

Weight (kDa)

8.93

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	200 - 326	4e-43	Cyclin, N-terminal domain
Cyclin_C	PF02984	329 - 450	2.6e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80370
fragaria_vesca	FvH4_6g30830 FvH4_6g30830 FvH4_6g30830
malus_domestica	MD09G1216400.v1.1 MD17G1198500.v1.1
prunus_persica	Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1
pyrus_communis	pycom17g20330
rosa_chinensis	RchiOBHm_Chr2g0137271
rosa_laevigata	RLG00000019646
rosa_multiflora	Rmu_sc0000894.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107240
rosa_rugosa	Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340600
rosa_samantha	Rh2AG388900 Rh2BG396700 Rh2CG376400 Rh2DG411700
rosa_wichuraiana	Rw2G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	248, 621
AccB7I	CCANNNNNTGG	1 cut(s)	44
AciI	CCGC	3 cut(s)	275, 691, 1340
AclWI	GGATC	1 cut(s)	563
AcsI	RAATTY	5 cut(s)	247, 388, 539, 696, 975
AcuI	CTGAAG	2 cut(s)	132, 250
AfaI	GTAC	3 cut(s)	744, 954, 1220
AfiI	CCNNNNNNNGG	3 cut(s)	44, 142, 940
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	821, 974, 993, 1114, 1330
AjnI	CCWGG	2 cut(s)	135, 933
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	3 cut(s)	677, 727, 808
AlwI	GGATC	1 cut(s)	563
AlwNI	CAGNNNCTG	1 cut(s)	934
ApeKI	GCWGC	3 cut(s)	119, 1022, 1136
ApoI	RAATTY	5 cut(s)	247, 388, 539, 696, 975
ArsI	GACNNNNNNTTYG	2 cut(s)	1230, 1262
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	1 cut(s)	931
AsuII	TTCGAA	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	931
AxyI	CCTNAGG	1 cut(s)	1004
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BauI	CACGAG	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	106, 1034, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciT130I	CCWGG	2 cut(s)	137, 935
BcoDI	GTCTC	3 cut(s)	677, 727, 808
BfmI	CTRYAG	2 cut(s)	451, 580
BfrI	CTTAAG	1 cut(s)	218
BfuAI	ACCTGC	2 cut(s)	248, 621
BisI	GCNGC	3 cut(s)	120, 1023, 1137
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	3 cut(s)	121, 1024, 1138
BmcAI	AGTACT	1 cut(s)	954
Bme1390I	CCNGG	2 cut(s)	137, 935
Bme18I	GGWCC	1 cut(s)	931
BmgT120I	GGNCC	1 cut(s)	931
BmrFI	CCNGG	2 cut(s)	137, 935
BmsI	GCATC	4 cut(s)	344, 355, 840, 1250
BpiI	GAAGAC	1 cut(s)	643
BpmI	CTGGAG	2 cut(s)	460, 1374
Bpu10I	CCTNAGC	1 cut(s)	430
Bpu1102I	GCTNAGC	1 cut(s)	624
Bpu14I	TTCGAA	1 cut(s)	854
BpuEI	CTTGAG	3 cut(s)	941, 1011, 1223
BsaI	GGTCTC	1 cut(s)	727
BsaJI	CCNNGG	7 cut(s)	43, 136, 174, 327, 790, 1187, 1335
BsaWI	WCCGGW	1 cut(s)	1363
BsaXI	ACNNNNNCTCC	2 cut(s)	1211, 1241
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 142, 940
Bse1I	ACTGG	1 cut(s)	785
Bse21I	CCTNAGG	1 cut(s)	1004
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	2 cut(s)	137, 935
BseDI	CCNNGG	7 cut(s)	43, 136, 174, 327, 790, 1187, 1335
BseGI	GGATG	3 cut(s)	184, 446, 1289
BseLI	CCNNNNNNNGG	3 cut(s)	44, 142, 940
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	4 cut(s)	615, 672, 738, 1018
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	1 cut(s)	902
BseXI	GCAGC	3 cut(s)	106, 1034, 1123
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	1364
BslFI	GGGAC	3 cut(s)	153, 318, 514
BslI	CCNNNNNNNGG	3 cut(s)	44, 142, 940
BsmAI	GTCTC	3 cut(s)	677, 727, 808
BsmFI	GGGAC	3 cut(s)	153, 318, 514
BsmI	GAATGC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	727
Bsp119I	TTCGAA	1 cut(s)	854
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	479, 568, 925, 1128, 1231
Bsp1720I	GCTNAGC	1 cut(s)	624
Bsp19I	CCATGG	2 cut(s)	43, 790
BspACI	CCGC	3 cut(s)	275, 691, 1340
BspCNI	CTCAG	4 cut(s)	616, 673, 737, 1017
BspMI	ACCTGC	2 cut(s)	248, 621
BspPI	GGATC	1 cut(s)	563
BspT104I	TTCGAA	1 cut(s)	854
BspTI	CTTAAG	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	7 cut(s)	43, 136, 174, 327, 790, 1187, 1335
BssMI	GATC	5 cut(s)	479, 568, 925, 1128, 1231
BssSI	CACGAG	1 cut(s)	60
BssT1I	CCWWGG	5 cut(s)	43, 174, 327, 790, 1187
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	137, 935
Bst4CI	ACNGT	2 cut(s)	505, 766
BstAFI	CTTAAG	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	854
BstC8I	GCNNGC	3 cut(s)	84, 210, 403
BstDEI	CTNAG	8 cut(s)	93, 149, 201, 430, 624, 681, 724, 1004
BstDSI	CCRYGG	3 cut(s)	43, 790, 1335
BstF5I	GGATG	3 cut(s)	184, 446, 1289
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	5 cut(s)	482, 571, 928, 1131, 1234
BstMAI	GTCTC	3 cut(s)	677, 727, 808
BstMBI	GATC	5 cut(s)	479, 568, 925, 1128, 1231
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 1142
BstNI	CCWGG	2 cut(s)	137, 935
BstSCI	CCNGG	2 cut(s)	135, 933
BstSFI	CTRYAG	2 cut(s)	451, 580
BstV1I	GCAGC	3 cut(s)	106, 1034, 1123
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu36I	CCTNAGG	1 cut(s)	1004
BtgI	CCRYGG	3 cut(s)	43, 790, 1335
BtgZI	GCGATG	1 cut(s)	1117
BtsCI	GGATG	3 cut(s)	184, 446, 1289
BtsIMutI	CAGTG	2 cut(s)	274, 771
BveI	ACCTGC	2 cut(s)	248, 621
Cac8I	GCNNGC	3 cut(s)	84, 210, 403
CaiI	CAGNNNCTG	1 cut(s)	934
CfoI	GCGC	1 cut(s)	877
Cfr13I	GGNCC	1 cut(s)	931
Csp6I	GTAC	3 cut(s)	743, 953, 1219
CviAII	CATG	4 cut(s)	44, 791, 872, 1306
CviQI	GTAC	3 cut(s)	743, 953, 1219
DdeI	CTNAG	8 cut(s)	93, 149, 201, 430, 624, 681, 724, 1004
DpnI	GATC	5 cut(s)	481, 570, 927, 1130, 1233
DpnII	GATC	5 cut(s)	479, 568, 925, 1128, 1231
Eco130I	CCWWGG	5 cut(s)	43, 174, 327, 790, 1187
Eco31I	GGTCTC	1 cut(s)	727
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	931
Eco57I	CTGAAG	2 cut(s)	132, 250
Eco81I	CCTNAGG	1 cut(s)	1004
EcoO109I	RGGNCCY	1 cut(s)	931
EcoRI	GAATTC	2 cut(s)	247, 696
EcoRII	CCWGG	2 cut(s)	135, 933
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	5 cut(s)	43, 174, 327, 790, 1187
ErhI	CCWWGG	5 cut(s)	43, 174, 327, 790, 1187
FaeI	CATG	4 cut(s)	47, 794, 875, 1309
FalI	AAGNNNNNCTT	2 cut(s)	1171, 1203
FaqI	GGGAC	3 cut(s)	153, 318, 514
FatI	CATG	4 cut(s)	43, 790, 871, 1305
FauI	CCCGC	1 cut(s)	684
Fnu4HI	GCNGC	3 cut(s)	120, 1023, 1137
FokI	GGATG	3 cut(s)	191, 433, 1296
Fsp4HI	GCNGC	3 cut(s)	120, 1023, 1137
GlaI	GCGC	1 cut(s)	876
GluI	GCNGC	3 cut(s)	120, 1023, 1137
GsuI	CTGGAG	2 cut(s)	460, 1374
HapII	CCGG	1 cut(s)	1364
HhaI	GCGC	1 cut(s)	877
Hin1II	CATG	4 cut(s)	47, 794, 875, 1309
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	2 cut(s)	403, 427
HinfI	GANTC	3 cut(s)	554, 1042, 1192
HpaII	CCGG	1 cut(s)	1364
Hpy166II	GTNNAC	3 cut(s)	547, 1164, 1249
Hpy188I	TCNGA	4 cut(s)	112, 559, 727, 1231
Hpy188III	TCNNGA	9 cut(s)	24, 477, 647, 1006, 1039, 1052, 1111, 1202, 1353
Hpy8I	GTNNAC	3 cut(s)	547, 1164, 1249
HpyAV	CCTTC	3 cut(s)	295, 1130, 1134
HpyCH4III	ACNGT	2 cut(s)	505, 766
HpyCH4IV	ACGT	2 cut(s)	1091, 1217
HpyCH4V	TGCA	4 cut(s)	197, 368, 593, 1258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 1142
HpyF3I	CTNAG	8 cut(s)	93, 149, 201, 430, 624, 681, 724, 1004
HpySE526I	ACGT	2 cut(s)	1091, 1217
Hsp92II	CATG	4 cut(s)	47, 794, 875, 1309
HspAI	GCGC	1 cut(s)	875
Kzo9I	GATC	5 cut(s)	479, 568, 925, 1128, 1231
LmnI	GCTCC	3 cut(s)	398, 479, 524
Lsp1109I	GCAGC	3 cut(s)	106, 1034, 1123
LweI	GCATC	4 cut(s)	344, 355, 840, 1250
MaeII	ACGT	2 cut(s)	1091, 1217
MaeIII	GTNAC	4 cut(s)	55, 235, 358, 676
MalI	GATC	5 cut(s)	481, 570, 927, 1130, 1233
MboI	GATC	5 cut(s)	479, 568, 925, 1128, 1231
MfeI	CAATTG	1 cut(s)	821
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	8 cut(s)	247, 388, 539, 696, 821, 975, 1072, 1085
MmeI	TCCRAC	1 cut(s)	1220
MseI	TTAA	6 cut(s)	219, 630, 1094, 1169, 1272, 1292
MslI	CAYNNNNRTG	1 cut(s)	839
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	1364
MspR9I	CCNGG	2 cut(s)	137, 935
MunI	CAATTG	1 cut(s)	821
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	2 cut(s)	137, 935
MwoI	GCNNNNNNNGC	2 cut(s)	83, 1142
NcoI	CCATGG	2 cut(s)	43, 790
NdeII	GATC	5 cut(s)	479, 568, 925, 1128, 1231
NlaIII	CATG	4 cut(s)	47, 794, 875, 1309
NmuCI	GTSAC	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	1 cut(s)	1088
PctI	GAATGC	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	554, 1042, 1192
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	933
PkrI	GCNGC	3 cut(s)	121, 1024, 1138
PpuMI	RGGWCCY	1 cut(s)	931
Psp5II	RGGWCCY	1 cut(s)	931
Psp6I	CCWGG	2 cut(s)	135, 933
PspGI	CCWGG	2 cut(s)	135, 933
PspPI	GGNCC	1 cut(s)	931
PspPPI	RGGWCCY	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	3 cut(s)	744, 954, 1220
RsaNI	GTAC	3 cut(s)	743, 953, 1219
RseI	CAYNNNNRTG	1 cut(s)	839
SaqAI	TTAA	6 cut(s)	219, 630, 1094, 1169, 1272, 1292
SatI	GCNGC	3 cut(s)	120, 1023, 1137
Sau3AI	GATC	5 cut(s)	479, 568, 925, 1128, 1231
Sau96I	GGNCC	1 cut(s)	931
ScaI	AGTACT	1 cut(s)	954
ScrFI	CCNGG	2 cut(s)	137, 935
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	4 cut(s)	344, 355, 840, 1250
SfcI	CTRYAG	2 cut(s)	451, 580
SfuI	TTCGAA	1 cut(s)	854
SinI	GGWCC	1 cut(s)	931
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	4 cut(s)	218, 956, 1026, 1202
SmoI	CTYRAG	4 cut(s)	218, 956, 1026, 1202
Sse9I	AATT	8 cut(s)	247, 388, 539, 696, 821, 975, 1072, 1085
SsiI	CCGC	3 cut(s)	275, 691, 1340
StyD4I	CCNGG	2 cut(s)	135, 933
StyI	CCWWGG	5 cut(s)	43, 174, 327, 790, 1187
TaaI	ACNGT	2 cut(s)	505, 766
TaiI	ACGT	2 cut(s)	1094, 1220
TaqI	TCGA	3 cut(s)	854, 1018, 1127
TasI	AATT	8 cut(s)	247, 388, 539, 696, 821, 975, 1072, 1085
TatI	WGTACW	1 cut(s)	952
TfiI	GAWTC	3 cut(s)	554, 1042, 1192
Tru1I	TTAA	6 cut(s)	219, 630, 1094, 1169, 1272, 1292
Tru9I	TTAA	6 cut(s)	219, 630, 1094, 1169, 1272, 1292
TscAI	CASTG	2 cut(s)	274, 771
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	3 cut(s)	119, 1022, 1136
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	3 cut(s)	889, 1322, 1366
TspGWI	ACGGA	3 cut(s)	920, 1097, 1324
TspRI	CASTG	2 cut(s)	274, 771
Van91I	CCANNNNNTGG	1 cut(s)	44
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	931
XapI	RAATTY	5 cut(s)	247, 388, 539, 696, 975
ZrmI	AGTACT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.