Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005771

Physical Location & Seq

Genomic Coordinates Forward (+)

59712767 .. 59714473

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG411700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAGAGACAGAATCTGGCCACTGCAAATGTGAAAGAGTTTCCTGGCCGCATAACACGTGCTCGAGCTGCTTCATTAGATACATCCAGACAGTTTCCCCCATTAAAAGCATGCACACAACCCAAGCTGCAGAGTCAGAAGCCAGCTTTGCGTGTGAATCCAAAGAGAGCATCTGTGGATGAGAACAACGAGAATGAGGCTGGTAACGCATGCATCCAGCATAAGAGGAGGGCAGTGCTGCAGGATGTAACCAATACTTTCTGTAAACCTTCATATGGGGACTGCTTCAATGCAACTAAAGTTCAGGCTAAGAAAAGAAAGCCAGCTAAAAGAGGTCAGGCAAGGGTCGCAAAATTGACCCCTTCGATTGCTGTAGATTTGAAAACGGAGGTTGTGCATGAAACAGTAAAAACAGAACTTACATCGGACAGATTTATGCACTCAATGAATTTGGAAGATGGTGACAAACTTTTTCATTTGGCTACCTTAAGTGGGGATGCTATTGCTATCCATCAGTTGGAACATCAGAGTTCTGAAGTGGATTCAAAAGTCCAAAGTTGTCCTAATAAAGGTTTGCTTTTGTTTTCTCACCTCGAGCATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010374 GO:0010389 GO:0010440 GO:0010444 GO:0010564 GO:0022402 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901576 GO:1901987 GO:1901990 GO:1902749 GO:1905392 GO:1905393 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

201

Amino Acids

22.36

Weight (kDa)

9.62

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80370
fragaria_vesca	FvH4_6g30830 FvH4_6g30830 FvH4_6g30830
malus_domestica	MD09G1216400.v1.1 MD17G1198500.v1.1
prunus_persica	Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1
pyrus_communis	pycom17g20330
rosa_chinensis	RchiOBHm_Chr2g0137271
rosa_laevigata	RLG00000019646
rosa_multiflora	Rmu_sc0000894.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107240
rosa_rugosa	Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340600
rosa_samantha	Rh2AG388900 Rh2BG396700 Rh2CG376400 Rh2DG411700
rosa_wichuraiana	Rw2G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	517
AciI	CCGC	1 cut(s)	49
AcoI	YGGCCR	2 cut(s)	18, 46
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	59
AfiI	CCNNNNNNNGG	4 cut(s)	275, 492, 517, 569
AflII	CTTAAG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	289, 382, 546
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	4 cut(s)	68, 127, 146, 326
AluI	AGCT	4 cut(s)	68, 127, 146, 326
Alw21I	GWGCWC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	16
Ama87I	CYCGRG	2 cut(s)	63, 593
AoxI	GGCC	2 cut(s)	18, 46
ApeKI	GCWGC	3 cut(s)	68, 127, 238
ApoI	RAATTY	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	473, 581
AvaI	CYCGRG	2 cut(s)	63, 593
BalI	TGGCCA	1 cut(s)	20
BbrPI	CACGTG	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	3 cut(s)	55, 114, 225
BccI	CCATC	2 cut(s)	452, 519
BciT130I	CCWGG	1 cut(s)	45
BfmI	CTRYAG	3 cut(s)	128, 239, 372
BfrI	CTTAAG	1 cut(s)	487
BisI	GCNGC	4 cut(s)	49, 69, 128, 239
BlsI	GCNGC	4 cut(s)	50, 70, 129, 240
Bme1390I	CCNGG	1 cut(s)	45
BmeT110I	CYCGRG	2 cut(s)	63, 593
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	3 cut(s)	179, 222, 487
BsaAI	YACGTR	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 492, 517, 569
BseBI	CCWGG	1 cut(s)	45
BseGI	GGATG	5 cut(s)	83, 184, 213, 250, 502
BseLI	CCNNNNNNNGG	4 cut(s)	275, 492, 517, 569
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	55, 114, 225
BshFI	GGCC	2 cut(s)	20, 48
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	2 cut(s)	63, 593
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	275, 492, 517, 569
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	20, 48
BsoBI	CYCGRG	2 cut(s)	63, 593
Bsp1286I	GDGCHC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	20, 48
BspMAI	CTGCAG	2 cut(s)	132, 243
BspTI	CTTAAG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	93, 406
BstAFI	CTTAAG	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	4 cut(s)	112, 144, 211, 324
BstDEI	CTNAG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstF5I	GGATG	5 cut(s)	83, 184, 213, 250, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 148, 206, 347
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	3 cut(s)	114, 213, 602
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	3 cut(s)	128, 239, 372
BstV1I	GCAGC	3 cut(s)	55, 114, 225
BsuRI	GGCC	2 cut(s)	20, 48
BtsCI	GGATG	5 cut(s)	83, 184, 213, 250, 502
BtsI	GCAGTG	2 cut(s)	21, 240
BtsIMutI	CAGTG	2 cut(s)	21, 240
Cac8I	GCNNGC	4 cut(s)	112, 144, 211, 324
CaiI	CAGNNNCTG	1 cut(s)	16
CviAII	CATG	4 cut(s)	111, 210, 398, 599
DdeI	CTNAG	1 cut(s)	309
EaeI	YGGCCR	2 cut(s)	18, 46
Eco57I	CTGAAG	1 cut(s)	555
Eco72I	CACGTG	1 cut(s)	59
Eco88I	CYCGRG	2 cut(s)	63, 593
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	215
FaeI	CATG	4 cut(s)	114, 213, 401, 602
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	4 cut(s)	110, 209, 397, 598
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	49, 69, 128, 239
FokI	GGATG	5 cut(s)	70, 191, 200, 257, 509
Fsp4HI	GCNGC	4 cut(s)	49, 69, 128, 239
GluI	GCNGC	4 cut(s)	49, 69, 128, 239
HaeIII	GGCC	2 cut(s)	20, 48
Hin1II	CATG	4 cut(s)	114, 213, 401, 602
HinfI	GANTC	4 cut(s)	13, 133, 157, 542
HphI	GGTGA	2 cut(s)	473, 581
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	4 cut(s)	138, 427, 528, 535
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	279, 372
HpyCH4III	ACNGT	2 cut(s)	93, 406
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	8 cut(s)	26, 114, 130, 213, 241, 293, 397, 439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 148, 206, 347
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	114, 213, 401, 602
Lsp1109I	GCAGC	3 cut(s)	55, 114, 225
LweI	GCATC	3 cut(s)	179, 222, 487
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	3 cut(s)	203, 247, 461
MboII	GAAGA	2 cut(s)	16, 467
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	2 cut(s)	353, 448
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	6 cut(s)	190, 219, 222, 326, 382, 602
Mox20I	TGGCCA	1 cut(s)	20
Mph1103I	ATGCAT	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	2 cut(s)	104, 488
Msp20I	TGGCCA	1 cut(s)	20
MspCI	CTTAAG	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	68, 148, 206, 347
NdeI	CATATG	1 cut(s)	274
NlaIII	CATG	4 cut(s)	114, 213, 401, 602
NmuCI	GTSAC	1 cut(s)	461
NsiI	ATGCAT	1 cut(s)	215
NspI	RCATGY	3 cut(s)	114, 213, 602
PaeI	GCATGC	2 cut(s)	114, 213
PaeR7I	CTCGAG	2 cut(s)	63, 593
PfeI	GAWTC	3 cut(s)	13, 157, 542
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	4 cut(s)	50, 70, 129, 240
PleI	GAGTC	1 cut(s)	141
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	141
Ppu21I	YACGTR	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	43
PspXI	VCTCGAGB	2 cut(s)	63, 593
PstI	CTGCAG	2 cut(s)	132, 243
PstNI	CAGNNNCTG	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	104, 488
SatI	GCNGC	4 cut(s)	49, 69, 128, 239
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	3 cut(s)	179, 222, 487
SfcI	CTRYAG	3 cut(s)	128, 239, 372
Sfr274I	CTCGAG	2 cut(s)	63, 593
SlaI	CTCGAG	2 cut(s)	63, 593
SmlI	CTYRAG	3 cut(s)	63, 487, 593
SmoI	CTYRAG	3 cut(s)	63, 487, 593
SphI	GCATGC	2 cut(s)	114, 213
Sse9I	AATT	2 cut(s)	353, 448
SsiI	CCGC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	93, 406
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	64, 365, 594
TasI	AATT	2 cut(s)	353, 448
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	3 cut(s)	13, 157, 542
Tru1I	TTAA	2 cut(s)	104, 488
Tru9I	TTAA	2 cut(s)	104, 488
TscAI	CASTG	2 cut(s)	28, 240
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	3 cut(s)	68, 127, 238
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	6 cut(s)	17, 63, 261, 414, 461, 464
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	28, 240
Van91I	CCANNNNNTGG	1 cut(s)	517
Vha464I	CTTAAG	1 cut(s)	487
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	3 cut(s)	114, 213, 602
XhoI	CTCGAG	2 cut(s)	63, 593
Zsp2I	ATGCAT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.