FvH4_6g30830

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
23980757 .. 23987859
7103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30830.t2

Sequence Viewer

Length: 1446 bp
ATGAAGAGACAGAATCTGGCTGCTGCAAATGTTAAAGAGTTTCCTGGCCGAATAACACGTGCTCGAGCTGCTTCATTAGATACATCCAGACAGTTTCCCCCATTAAAAGCATGCACACAACCCCCACAGCAAAGTCAGAAGCCGGGTTTGCGAGCGAATAAAAAGAGAGCTTATGTGGATGAGAACAACGAGAATAAGGGTGGTAATGCATGCATCCAGAATAAGAGGAGGGCAGTGCTTCAGGATGTAACCAATGCTTTCTGTAAACCTTCATACGGGGACTGCTTCAATGCAACTAAAGTTCAGGCTAAGAAAAGAAAGCCAGCTAAAAGAGCTCAGGCAAGGGTCACAAAAATGACCCCTTCCACTGATGTAGATCTCAAAACGGAGGTTGTGCATGAAACAGTAAAAACAGAACTTATGCCTTCAATGAATTTGGAAGATGGTGACAAACTTTTTCGTTCGGCTACCTTAAGTGGGGATGCTATAGCTATCTATCAGTTAGAACATCAGAGTTCGGAAGTGGATTCAGAAGCCTATTGTCATTCTAATAAAGCAGAAATTGGTAACCTTTTGATGAACATGATCACATCCAGTAAACTGGATGTTGTTGATATTGATGCTGGTCACAAGGATCCTCAATTGTGTAGCCTCTATGCCCCTGATATCTATAACAACTTGCGTGTTGCAGAGCTTTCCCGAAGGCCATTTCCTGGTTTTATGGAAACAATTCAACGCGATATCACCACAAGTATGCGGGGTATTTTAGTAGATTGGCTAGTTGAGGTGTCAGAGGAATATAAGTTGGTGCCAGATACGCTTTACCTCACAGTATATCTCATTGATTGGTTTCTCTCCAAGAACTACATTGAAAGACAGAGACTCCAACTGCTTGGCATCACTTGCATGCTGATTGCCTCGAAATACGAAGAAATTTGTGCACCACGTTTGGATGAATTTTGTTTCATGACAGACAACACTTACACGAAAGAGGATGTATTGCAAATGGAGAATCAAGTCTTGAAGTACTTAGGCTTTCAGCTTTTTGCGCCAACAGCAAAAAGTTTCCTCAGGAGATTTCTTTTAGCAGCACAAGCTTCTTATAAGAGCCCTAGCCTTGAGCTGGAGTGCTTGGCCAACTATCTTGCCGAACTAGCACTGGTCGACTATGGCTTTTTGAAGTTCCTACCTTCAATGATTGCTGCATCAGCTGTGTTTCTTTCCAAATGGACCTTAGACCAGTCTAGTCACCCATGGAATCCAATCCTAGAACACTATACCTCTTACAAGCCATCAGATTTGAAGATTTCAGTTCTTGCTTTGCAAGATTTGCAATTGAACACAAATGGCTGTCCTCTGAGTGCTGTACGAATGAAGTACAAGCAACCAAAGTTTAAATCCGTGGCGGCTTTATCATCCCCAAAGCTTCTTGAAACACTATTTTGA

Protein Analysis

482

Amino Acids

54.42

Weight (kDa)

8.76

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 221 - 347 3.4e-44 Cyclin, N-terminal domain
Cyclin_C PF02984 350 - 472 1.5e-34 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
AccB1I GGYRCC 1 cut(s) 808
AccB7I CCANNNNNTGG 1 cut(s) 713
AccI GTMKAC 1 cut(s) 1164
AccII CGCG 1 cut(s) 738
AciI CCGC 2 cut(s) 757, 1406
AclWI GGATC 2 cut(s) 629, 642
AcoI YGGCCR 2 cut(s) 46, 1134
AcsI RAATTY 3 cut(s) 433, 933, 956
AcuI CTGAAG 1 cut(s) 224
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 3 cut(s) 1028, 1368, 1379
AfiI CCNNNNNNNGG 4 cut(s) 275, 477, 713, 1123
AflII CTTAAG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 56
AjnI CCWGG 2 cut(s) 43, 712
Alw21I GWGCWC 3 cut(s) 64, 337, 943
Alw26I GTCTC 1 cut(s) 874
Alw44I GTGCAC 1 cut(s) 939
AlwI GGATC 2 cut(s) 629, 642
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 3 cut(s) 46, 704, 1134
ApaLI GTGCAC 1 cut(s) 939
ApeKI GCWGC 5 cut(s) 20, 23, 68, 1088, 1202
ApoI RAATTY 3 cut(s) 433, 933, 956
Asp700I GAANNNNTTC 1 cut(s) 729
AspLEI GCGC 1 cut(s) 1051
AspS9I GGNCC 1 cut(s) 1230
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 458, 736, 1241
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 1230
AxyI CCTNAGG 1 cut(s) 1070
BaeGI GKGCMC 1 cut(s) 943
BalI TGGCCA 1 cut(s) 1136
BamHI GGATCC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 808
BanII GRGCYC 2 cut(s) 337, 1112
BbrPI CACGTG 1 cut(s) 59
Bbv12I GWGCWC 3 cut(s) 64, 337, 943
BbvI GCAGC 5 cut(s) 7, 10, 55, 1100, 1189
BccI CCATC 2 cut(s) 437, 1300
BciT130I CCWGG 2 cut(s) 45, 714
BclI TGATCA 1 cut(s) 585
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 874
BfaI CTAG 5 cut(s) 779, 1113, 1154, 1245, 1268
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 472
BglII AGATCT 1 cut(s) 376
BisI GCNGC 6 cut(s) 21, 24, 69, 1089, 1203, 1407
BlsI GCNGC 6 cut(s) 22, 25, 70, 1090, 1204, 1408
BmcAI AGTACT 1 cut(s) 1028
Bme1390I CCNGG 3 cut(s) 45, 144, 714
Bme18I GGWCC 1 cut(s) 1230
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 1230
BmiI GGNNCC 2 cut(s) 636, 810
BmrFI CCNGG 3 cut(s) 45, 144, 714
BmsI GCATC 5 cut(s) 222, 472, 610, 906, 1214
BpmI CTGGAG 1 cut(s) 1145
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 1139
BpuMI CCSGG 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 1253, 1401
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 477, 713, 1123
Bse1I ACTGG 4 cut(s) 594, 606, 1164, 1240
Bse21I CCTNAGG 1 cut(s) 1070
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 2 cut(s) 45, 714
BseDI CCNNGG 2 cut(s) 1253, 1401
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 4 cut(s) 275, 477, 713, 1123
BseMII CTCAG 3 cut(s) 350, 1084, 1349
BseNI ACTGG 4 cut(s) 594, 606, 1164, 1240
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 5 cut(s) 7, 10, 55, 1100, 1189
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 3 cut(s) 48, 706, 1136
BshNI GGYRCC 1 cut(s) 808
BsiHKAI GWGCWC 3 cut(s) 64, 337, 943
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 4 cut(s) 275, 477, 713, 1123
BsmAI GTCTC 1 cut(s) 874
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 3 cut(s) 48, 706, 1136
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 4 cut(s) 64, 337, 943, 1112
Bsp143I GATC 3 cut(s) 376, 585, 634
Bsp19I CCATGG 1 cut(s) 1253
BspACI CCGC 2 cut(s) 757, 1406
BspANI GGCC 3 cut(s) 48, 706, 1136
BspCNI CTCAG 3 cut(s) 349, 1083, 1350
BspFNI CGCG 1 cut(s) 738
BspHI TCATGA 1 cut(s) 966
BspLI GGNNCC 2 cut(s) 636, 810
BspPI GGATC 2 cut(s) 629, 642
BspT107I GGYRCC 1 cut(s) 808
BspTI CTTAAG 1 cut(s) 472
BsrI ACTGG 4 cut(s) 594, 606, 1164, 1240
BssECI CCNNGG 2 cut(s) 1253, 1401
BssMI GATC 3 cut(s) 376, 585, 634
BssT1I CCWWGG 1 cut(s) 1253
Bst2UI CCWGG 2 cut(s) 45, 714
Bst4CI ACNGT 3 cut(s) 93, 406, 832
BstAFI CTTAAG 1 cut(s) 472
BstAPI GCANNNNNTGC 2 cut(s) 903, 1330
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 5 cut(s) 112, 153, 211, 324, 908
BstDEI CTNAG 6 cut(s) 309, 336, 1030, 1070, 1234, 1358
BstDSI CCRYGG 2 cut(s) 1253, 1401
BstEII GGTNACC 1 cut(s) 566
BstFNI CGCG 1 cut(s) 738
BstHHI GCGC 1 cut(s) 1051
BstKTI GATC 3 cut(s) 379, 588, 637
BstMAI GTCTC 1 cut(s) 874
BstMBI GATC 3 cut(s) 376, 585, 634
BstNI CCWGG 2 cut(s) 45, 714
BstNSI RCATGY 3 cut(s) 114, 213, 910
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 3 cut(s) 43, 142, 712
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 943
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 5 cut(s) 7, 10, 55, 1100, 1189
BstX2I RGATCY 2 cut(s) 376, 634
BstXI CCANNNNNNTGG 2 cut(s) 601, 893
BstYI RGATCY 2 cut(s) 376, 634
Bsu36I CCTNAGG 1 cut(s) 1070
BsuRI GGCC 3 cut(s) 48, 706, 1136
BtgI CCRYGG 2 cut(s) 1253, 1401
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 3 cut(s) 240, 366, 1157
Cac8I GCNNGC 5 cut(s) 112, 153, 211, 324, 908
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 966
CfoI GCGC 1 cut(s) 1051
Cfr13I GGNCC 1 cut(s) 1230
Csp6I GTAC 3 cut(s) 1027, 1367, 1378
CviAII CATG 7 cut(s) 111, 210, 398, 583, 907, 967, 1254
CviQI GTAC 3 cut(s) 1027, 1367, 1378
DdeI CTNAG 6 cut(s) 309, 336, 1030, 1070, 1234, 1358
DpnI GATC 3 cut(s) 378, 587, 636
DpnII GATC 3 cut(s) 376, 585, 634
DraI TTTAAA 1 cut(s) 1396
EaeI YGGCCR 2 cut(s) 46, 1134
Ecl136II GAGCTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 1253
Eco24I GRGCYC 2 cut(s) 337, 1112
Eco32I GATATC 2 cut(s) 667, 742
Eco47I GGWCC 1 cut(s) 1230
Eco53kI GAGCTC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 1070
Eco88I CYCGRG 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 2 cut(s) 43, 712
EcoRV GATATC 2 cut(s) 667, 742
EcoT14I CCWWGG 1 cut(s) 1253
EcoT22I ATGCAT 2 cut(s) 211, 215
EcoT38I GRGCYC 2 cut(s) 337, 1112
ErhI CCWWGG 1 cut(s) 1253
FaeI CATG 7 cut(s) 114, 213, 401, 586, 910, 970, 1257
FaqI GGGAC 1 cut(s) 293
FatI CATG 7 cut(s) 110, 209, 397, 582, 906, 966, 1253
FauI CCCGC 1 cut(s) 750
FbaI TGATCA 1 cut(s) 585
FblI GTMKAC 1 cut(s) 1164
Fnu4HI GCNGC 6 cut(s) 21, 24, 69, 1089, 1203, 1407
FriOI GRGCYC 2 cut(s) 337, 1112
Fsp4HI GCNGC 6 cut(s) 21, 24, 69, 1089, 1203, 1407
FspBI CTAG 5 cut(s) 779, 1113, 1154, 1245, 1268
GlaI GCGC 1 cut(s) 1050
GluI GCNGC 6 cut(s) 21, 24, 69, 1089, 1203, 1407
GsuI CTGGAG 1 cut(s) 1145
HaeIII GGCC 3 cut(s) 48, 706, 1136
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 1051
Hin1II CATG 7 cut(s) 114, 213, 401, 586, 910, 970, 1257
Hin6I GCGC 1 cut(s) 1049
HinP1I GCGC 1 cut(s) 1049
HincII GTYRAC 1 cut(s) 1165
HindII GTYRAC 1 cut(s) 1165
HindIII AAGCTT 2 cut(s) 1095, 1424
HinfI GANTC 5 cut(s) 13, 527, 882, 1012, 1258
HpaII CCGG 1 cut(s) 143
HphI GGTGA 3 cut(s) 458, 736, 1241
Hpy166II GTNNAC 4 cut(s) 266, 599, 941, 1165
Hpy188I TCNGA 7 cut(s) 138, 513, 520, 532, 793, 1297, 1359
Hpy188III TCNNGA 8 cut(s) 87, 217, 242, 699, 967, 1021, 1072, 1430
Hpy8I GTNNAC 4 cut(s) 266, 599, 941, 1165
HpyAV CCTTC 5 cut(s) 279, 372, 435, 696, 1200
HpyCH4III ACNGT 3 cut(s) 93, 406, 832
HpyCH4IV ACGT 2 cut(s) 58, 946
HpyF3I CTNAG 6 cut(s) 309, 336, 1030, 1070, 1234, 1358
HpySE526I ACGT 2 cut(s) 58, 946
Hsp92II CATG 7 cut(s) 114, 213, 401, 586, 910, 970, 1257
HspAI GCGC 1 cut(s) 1049
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 3 cut(s) 376, 585, 634
Lsp1109I GCAGC 5 cut(s) 7, 10, 55, 1100, 1189
LweI GCATC 5 cut(s) 222, 472, 610, 906, 1214
MaeI CTAG 5 cut(s) 779, 1113, 1154, 1245, 1268
MaeII ACGT 2 cut(s) 58, 946
MaeIII GTNAC 6 cut(s) 247, 346, 446, 566, 626, 1247
MalI GATC 3 cut(s) 378, 587, 636
MboI GATC 3 cut(s) 376, 585, 634
MboII GAAGA 4 cut(s) 16, 452, 941, 1315
MfeI CAATTG 2 cut(s) 641, 1334
MflI RGATCY 2 cut(s) 376, 634
MhlI GDGCHC 4 cut(s) 64, 337, 943, 1112
MlsI TGGCCA 1 cut(s) 1136
MluCI AATT 7 cut(s) 433, 561, 641, 729, 933, 956, 1334
MluNI TGGCCA 1 cut(s) 1136
MlyI GAGTC 1 cut(s) 876
MmeI TCCRAC 1 cut(s) 910
Mox20I TGGCCA 1 cut(s) 1136
Mph1103I ATGCAT 2 cut(s) 211, 215
MroXI GAANNNNTTC 1 cut(s) 729
MscI TGGCCA 1 cut(s) 1136
MseI TTAA 4 cut(s) 33, 104, 473, 1395
MslI CAYNNNNRTG 3 cut(s) 353, 752, 905
Msp20I TGGCCA 1 cut(s) 1136
MspA1I CMGCKG 1 cut(s) 1211
MspCI CTTAAG 1 cut(s) 472
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 3 cut(s) 45, 144, 714
MunI CAATTG 2 cut(s) 641, 1334
MvaI CCWGG 2 cut(s) 45, 714
MvnI CGCG 1 cut(s) 738
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 1253
NdeII GATC 3 cut(s) 376, 585, 634
NlaIII CATG 7 cut(s) 114, 213, 401, 586, 910, 970, 1257
NlaIV GGNNCC 2 cut(s) 636, 810
NmuCI GTSAC 4 cut(s) 346, 446, 626, 1247
NsiI ATGCAT 2 cut(s) 211, 215
NspI RCATGY 3 cut(s) 114, 213, 910
PaeI GCATGC 3 cut(s) 114, 213, 910
PaeR7I CTCGAG 1 cut(s) 63
PagI TCATGA 1 cut(s) 966
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 4 cut(s) 13, 527, 1012, 1258
PflMI CCANNNNNTGG 1 cut(s) 713
PkrI GCNGC 6 cut(s) 22, 25, 70, 1090, 1204, 1408
PleI GAGTC 1 cut(s) 876
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 1 cut(s) 876
Ppu21I YACGTR 1 cut(s) 59
PsiI TTATAA 1 cut(s) 1104
Psp124BI GAGCTC 1 cut(s) 337
Psp6I CCWGG 2 cut(s) 43, 712
PspCI CACGTG 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 566
PspGI CCWGG 2 cut(s) 43, 712
PspN4I GGNNCC 2 cut(s) 636, 810
PspPI GGNCC 1 cut(s) 1230
PspXI VCTCGAGB 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 376, 634
PvuII CAGCTG 1 cut(s) 1211
RsaI GTAC 3 cut(s) 1028, 1368, 1379
RsaNI GTAC 3 cut(s) 1027, 1367, 1378
RseI CAYNNNNRTG 3 cut(s) 353, 752, 905
SacI GAGCTC 1 cut(s) 337
SalI GTCGAC 1 cut(s) 1163
SaqAI TTAA 4 cut(s) 33, 104, 473, 1395
SatI GCNGC 6 cut(s) 21, 24, 69, 1089, 1203, 1407
Sau3AI GATC 3 cut(s) 376, 585, 634
Sau96I GGNCC 1 cut(s) 1230
ScaI AGTACT 1 cut(s) 1028
SchI GAGTC 1 cut(s) 876
ScrFI CCNGG 3 cut(s) 45, 144, 714
SduI GDGCHC 4 cut(s) 64, 337, 943, 1112
SfaNI GCATC 5 cut(s) 222, 472, 610, 906, 1214
SfcI CTRYAG 1 cut(s) 486
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 1230
SlaI CTCGAG 1 cut(s) 63
SmiMI CAYNNNNRTG 3 cut(s) 353, 752, 905
SmlI CTYRAG 3 cut(s) 63, 472, 1118
SmoI CTYRAG 3 cut(s) 63, 472, 1118
SphI GCATGC 3 cut(s) 114, 213, 910
Sse9I AATT 7 cut(s) 433, 561, 641, 729, 933, 956, 1334
SsiI CCGC 2 cut(s) 757, 1406
SspMI CTAG 5 cut(s) 779, 1113, 1154, 1245, 1268
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 3 cut(s) 43, 142, 712
StyI CCWWGG 1 cut(s) 1253
TaaI ACNGT 3 cut(s) 93, 406, 832
TaiI ACGT 2 cut(s) 61, 949
TaqI TCGA 3 cut(s) 64, 920, 1164
TasI AATT 7 cut(s) 433, 561, 641, 729, 933, 956, 1334
TatI WGTACW 2 cut(s) 1026, 1377
TauI GCSGC 1 cut(s) 1409
TfiI GAWTC 4 cut(s) 13, 527, 1012, 1258
Tru1I TTAA 4 cut(s) 33, 104, 473, 1395
Tru9I TTAA 4 cut(s) 33, 104, 473, 1395
TscAI CASTG 3 cut(s) 240, 373, 1164
TseFI GTSAC 4 cut(s) 346, 446, 626, 1247
TseI GCWGC 5 cut(s) 20, 23, 68, 1088, 1202
Tsp45I GTSAC 4 cut(s) 346, 446, 626, 1247
TspDTI ATGAA 9 cut(s) 17, 63, 261, 414, 446, 593, 955, 969, 1388
TspGWI ACGGA 2 cut(s) 401, 1390
TspRI CASTG 3 cut(s) 240, 373, 1164
Van91I CCANNNNNTGG 1 cut(s) 713
Vha464I CTTAAG 1 cut(s) 472
VneI GTGCAC 1 cut(s) 939
VpaK11BI GGWCC 1 cut(s) 1230
XapI RAATTY 3 cut(s) 433, 933, 956
XceI RCATGY 3 cut(s) 114, 213, 910
XhoI CTCGAG 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 1164
XmnI GAANNNNTTC 1 cut(s) 729
XspI CTAG 5 cut(s) 779, 1113, 1154, 1245, 1268
ZrmI AGTACT 1 cut(s) 1028
Zsp2I ATGCAT 2 cut(s) 211, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.