Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005771

Physical Location & Seq

Genomic Coordinates Forward (+)

42394440 .. 42395391

Gene Structure 952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0340600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCACAGTGAGACTGTAAAATTTGGCCACGTTACTTTCTTCTGGAATGGGAATCGCTCTGGATGCTTTAACCCTGAAATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTACGTGTTAACCTACCCAATGGGGACATGGTGCGGCATACTAGTGACATTGAGGCCACAATTGTTGCCTGCAAGGCTGTTGATCAAGCTGTCAAGGTTCCCATTGCTATTGGAGGCCACGGACTGGCACCTGGTTTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTTCCCAAGAGAACATAGGGAAAAGAATTCTCACTCTATTATTTCCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010374 GO:0010389 GO:0010440 GO:0010444 GO:0010564 GO:0022402 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901576 GO:1901987 GO:1901990 GO:1902749 GO:1905392 GO:1905393 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

157

Amino Acids

17.25

Weight (kDa)

7.83

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	2 - 99	5.6e-29	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80370
fragaria_vesca	FvH4_6g30830 FvH4_6g30830 FvH4_6g30830
malus_domestica	MD09G1216400.v1.1 MD17G1198500.v1.1
prunus_persica	Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1
pyrus_communis	pycom17g20330
rosa_chinensis	RchiOBHm_Chr2g0137271
rosa_laevigata	RLG00000019646
rosa_multiflora	Rmu_sc0000894.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107240
rosa_rugosa	Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340600
rosa_samantha	Rh2AG388900 Rh2BG396700 Rh2CG376400 Rh2DG411700
rosa_wichuraiana	Rw2G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	325
AciI	CCGC	2 cut(s)	235, 346
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	4 cut(s)	20, 96, 444, 467
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	3 cut(s)	79, 325, 365
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	124, 197
AhlI	ACTAGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	4 cut(s)	25, 255, 316, 414
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	4 cut(s)	20, 96, 444, 467
AspS9I	GGNCC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	2 cut(s)	283, 393
BcoDI	GTCTC	1 cut(s)	5
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	2 cut(s)	236, 384
BlsI	GCNGC	2 cut(s)	237, 385
Bme1390I	CCNGG	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	4 cut(s)	300, 330, 344, 417
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	53, 163
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 325, 365
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	2 cut(s)	68, 178
BseLI	CCNNNNNNNGG	3 cut(s)	79, 325, 365
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	4 cut(s)	27, 257, 318, 416
BshNI	GGYRCC	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	79, 325, 365
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	4 cut(s)	27, 257, 318, 416
Bsp143I	GATC	3 cut(s)	283, 352, 393
BspACI	CCGC	2 cut(s)	235, 346
BspANI	GGCC	4 cut(s)	27, 257, 318, 416
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	4 cut(s)	300, 330, 344, 417
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	283, 352, 393
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	8, 16
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	68, 178
BstKTI	GATC	3 cut(s)	286, 355, 396
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	283, 352, 393
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 164, 173, 275, 380
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	27, 257, 318, 416
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	68, 178
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	415
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	2 cut(s)	229, 404
CviJI	RGCY	7 cut(s)	27, 133, 257, 278, 290, 318, 416
CviKI_1	RGCY	7 cut(s)	27, 133, 257, 278, 290, 318, 416
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	3 cut(s)	285, 354, 395
DpnII	GATC	3 cut(s)	283, 352, 393
EaeI	YGGCCR	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	232, 407
FaiI	YATR	6 cut(s)	90, 230, 240, 392, 405, 434
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	228, 403
FbaI	TGATCA	2 cut(s)	283, 393
Fnu4HI	GCNGC	2 cut(s)	236, 384
FokI	GGATG	2 cut(s)	75, 185
Fsp4HI	GCNGC	2 cut(s)	236, 384
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	2 cut(s)	236, 384
HaeIII	GGCC	4 cut(s)	27, 257, 318, 416
Hin1II	CATG	2 cut(s)	232, 407
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	52, 114
HpaI	GTTAAC	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	183, 360
Hpy188III	TCNNGA	2 cut(s)	43, 60
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	136, 429
HpyCH4III	ACNGT	2 cut(s)	8, 16
HpyCH4IV	ACGT	3 cut(s)	30, 126, 205
HpyCH4V	TGCA	4 cut(s)	4, 273, 386, 403
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 164, 173, 275, 380
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	3 cut(s)	30, 126, 205
Hsp92II	CATG	2 cut(s)	232, 407
Ksp22I	TGATCA	2 cut(s)	283, 393
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	283, 352, 393
LpnPI	CCDG	9 cut(s)	28, 45, 87, 143, 185, 283, 311, 318, 345
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	2 cut(s)	53, 163
MabI	ACCWGGT	1 cut(s)	331
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	3 cut(s)	30, 126, 205
MaeIII	GTNAC	2 cut(s)	31, 245
MalI	GATC	3 cut(s)	285, 354, 395
MboI	GATC	3 cut(s)	283, 352, 393
MboII	GAAGA	2 cut(s)	31, 347
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	352
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	5 cut(s)	20, 96, 261, 444, 467
MluNI	TGGCCA	1 cut(s)	27
MnlI	CCTC	4 cut(s)	76, 247, 308, 406
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	2 cut(s)	69, 210
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	333
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	63, 164, 173, 275, 380
NdeII	GATC	3 cut(s)	283, 352, 393
NlaIII	CATG	2 cut(s)	232, 407
NlaIV	GGNNCC	4 cut(s)	300, 330, 344, 417
NmuCI	GTSAC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	52, 114
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	237, 385
Ppu21I	YACGTR	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	4 cut(s)	300, 330, 344, 417
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	69, 210
SatI	GCNGC	2 cut(s)	236, 384
Sau3AI	GATC	3 cut(s)	283, 352, 393
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	8 cut(s)	33, 129, 204, 208, 216, 292, 300, 334
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	53, 163
SmiMI	CAYNNNNRTG	1 cut(s)	243
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	5 cut(s)	20, 96, 261, 444, 467
SsiI	CCGC	2 cut(s)	235, 346
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	8, 16
TaiI	ACGT	3 cut(s)	33, 129, 208
TasI	AATT	5 cut(s)	20, 96, 261, 444, 467
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	52, 114
Tru1I	TTAA	2 cut(s)	69, 210
Tru9I	TTAA	2 cut(s)	69, 210
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	325
XapI	RAATTY	4 cut(s)	20, 96, 444, 467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.