Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005771

Physical Location & Seq

Genomic Coordinates Forward (+)

56270194 .. 56273428

Gene Structure 3235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG396700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAGAGACAGAATCTGGCCACTGCAAATGTGAAAGAGTTTCCAGGCCGCATAACACGTGCTCGAGCTGCTTCATTAGATACATCCAGACAGTTTCCCCCATTAAAAGCATGCACACAACCCAAGCAGCAGAGTCAGAAGCCGGCTTTGCGTGTGAATCCAAAGAGAGCATCTGTGGATGAGAACAACGAGAATGAGGCTGGTAACGCATGCATCCAGCATAAGAGGAGAGCAGTGCTGCAGGATGTAACCAATACTTTCTGTAAACCTTCATATGGGGACTGCTTCAATGCAACTAAAGTTCAGGCTAAGAAAAGAAAGCCAGCTAAAAGAGGTCAGGCAAGGGTCACAAAATTGACCCCTTCGATTGCTGTAGATTTGAAAATGGAGGTTGTGCATGAAACAGTAAAAACAGAACTTAAATCGGACAGATTTATGCATTCAATGAATTTGGAAGATGGTGACAAACTTTTTCATTCGGCTACCTTAAGTGGGGATGCTATTGCTATCCATCAGTTGGAACATCAGAGTTCTGAAGTGGATTCAAAAGTCCAAAGTTGTCCTAATAAAGCAGACATTGGTAACCTTTTGATGAACATGATCACATTGAGTAACCCGGATATTGTTGACATTGATGCTGGTCACAAGGATCCCCAATTGTGTAGCCTCTATGCCCCTGATATCTATAACAACTTACGTGTTGCAGAGCTTTCCCGAAGGCCATTTCCTAGTTTTATGGAAACGACACAACGCGATATCACCACAAGTATGCGGGGTATTTTAATAGATTGGCTAGTGGAGGTGTCAGAGGAATATAAGTTGGTGCCAGATACCCTTTACCTCACAGTATATCTGATAGATTGGTTTCTTTCCAAGAATTACATTGAAAGACACAGACTTCAACTGCTTGGCATCACTTGCATGCTGATTGCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010374 GO:0010389 GO:0010440 GO:0010444 GO:0010564 GO:0022402 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901576 GO:1901987 GO:1901990 GO:1902749 GO:1905392 GO:1905393 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

312

Amino Acids

35.26

Weight (kDa)

8.98

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	227 - 312	2.3e-25	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80370
fragaria_vesca	FvH4_6g30830 FvH4_6g30830 FvH4_6g30830
malus_domestica	MD09G1216400.v1.1 MD17G1198500.v1.1
prunus_persica	Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1
pyrus_communis	pycom17g20330
rosa_chinensis	RchiOBHm_Chr2g0137271
rosa_laevigata	RLG00000019646
rosa_multiflora	Rmu_sc0000894.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107240
rosa_rugosa	Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340600
rosa_samantha	Rh2AG388900 Rh2BG396700 Rh2CG376400 Rh2DG411700
rosa_wichuraiana	Rw2G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	823
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccII	CGCG	1 cut(s)	753
AciI	CCGC	2 cut(s)	49, 772
AclWI	GGATC	2 cut(s)	644, 657
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	275, 492, 517
AflII	CTTAAG	1 cut(s)	487
AflIII	ACRYGT	2 cut(s)	56, 697
AgsI	TTSAA	6 cut(s)	289, 382, 444, 546, 887, 902
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	68, 326, 709
AluI	AGCT	3 cut(s)	68, 326, 709
Alw21I	GWGCWC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	644, 657
AlwNI	CAGNNNCTG	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	18, 46, 719
ApeKI	GCWGC	3 cut(s)	68, 127, 238
ApoI	RAATTY	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	2 cut(s)	473, 751
AvaI	CYCGRG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	649
BanI	GGYRCC	1 cut(s)	823
BbrPI	CACGTG	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	3 cut(s)	55, 139, 225
BccI	CCATC	2 cut(s)	452, 519
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	617
BfaI	CTAG	2 cut(s)	729, 794
BfmI	CTRYAG	2 cut(s)	239, 372
BfrI	CTTAAG	1 cut(s)	487
BisI	GCNGC	4 cut(s)	49, 69, 128, 239
BlsI	GCNGC	4 cut(s)	50, 70, 129, 240
Bme1390I	CCNGG	2 cut(s)	45, 617
BmeT110I	CYCGRG	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	651, 825
BmrFI	CCNGG	2 cut(s)	45, 617
BmsI	GCATC	5 cut(s)	179, 222, 487, 625, 921
BpuMI	CCSGG	1 cut(s)	617
BsaAI	YACGTR	2 cut(s)	59, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 492, 517
Bse118I	RCCGGY	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	45
BseGI	GGATG	5 cut(s)	83, 184, 213, 250, 502
BseLI	CCNNNNNNNGG	3 cut(s)	275, 492, 517
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	55, 139, 225
Bsh1236I	CGCG	1 cut(s)	753
BshFI	GGCC	3 cut(s)	20, 48, 721
BshNI	GGYRCC	1 cut(s)	823
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	143, 617
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	275, 492, 517
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	3 cut(s)	20, 48, 721
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	600, 649
BspACI	CCGC	2 cut(s)	49, 772
BspANI	GGCC	3 cut(s)	20, 48, 721
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	651, 825
BspMAI	CTGCAG	1 cut(s)	243
BspPI	GGATC	2 cut(s)	644, 657
BspT107I	GGYRCC	1 cut(s)	823
BspTI	CTTAAG	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	2 cut(s)	600, 649
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	93, 406, 847
BstAFI	CTTAAG	1 cut(s)	487
BstAPI	GCANNNNNTGC	1 cut(s)	918
BstBAI	YACGTR	2 cut(s)	59, 698
BstC8I	GCNNGC	5 cut(s)	112, 144, 211, 324, 923
BstDEI	CTNAG	1 cut(s)	309
BstEII	GGTNACC	1 cut(s)	581
BstF5I	GGATG	5 cut(s)	83, 184, 213, 250, 502
BstFNI	CGCG	1 cut(s)	753
BstKTI	GATC	2 cut(s)	603, 652
BstMBI	GATC	2 cut(s)	600, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 148, 206, 918
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	3 cut(s)	114, 213, 925
BstPI	GGTNACC	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	43, 615
BstSFI	CTRYAG	2 cut(s)	239, 372
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	3 cut(s)	55, 139, 225
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	20, 48, 721
BtsCI	GGATG	5 cut(s)	83, 184, 213, 250, 502
BtsI	GCAGTG	2 cut(s)	21, 240
BtsIMutI	CAGTG	2 cut(s)	21, 240
Cac8I	GCNNGC	5 cut(s)	112, 144, 211, 324, 923
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	142
CviAII	CATG	5 cut(s)	111, 210, 398, 598, 922
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	602, 651
DpnII	GATC	2 cut(s)	600, 649
EaeI	YGGCCR	1 cut(s)	18
Eco32I	GATATC	2 cut(s)	682, 757
Eco57I	CTGAAG	1 cut(s)	555
Eco72I	CACGTG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	43
EcoRV	GATATC	2 cut(s)	682, 757
EcoT22I	ATGCAT	2 cut(s)	215, 441
FaeI	CATG	5 cut(s)	114, 213, 401, 601, 925
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	5 cut(s)	110, 209, 397, 597, 921
FauI	CCCGC	1 cut(s)	765
FauNDI	CATATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	4 cut(s)	49, 69, 128, 239
FokI	GGATG	5 cut(s)	70, 191, 200, 257, 509
Fsp4HI	GCNGC	4 cut(s)	49, 69, 128, 239
FspBI	CTAG	2 cut(s)	729, 794
GluI	GCNGC	4 cut(s)	49, 69, 128, 239
HaeIII	GGCC	3 cut(s)	20, 48, 721
HapII	CCGG	2 cut(s)	143, 617
Hin1II	CATG	5 cut(s)	114, 213, 401, 601, 925
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	4 cut(s)	13, 133, 157, 542
HpaII	CCGG	2 cut(s)	143, 617
HphI	GGTGA	2 cut(s)	473, 751
Hpy166II	GTNNAC	2 cut(s)	266, 628
Hpy188I	TCNGA	6 cut(s)	138, 427, 528, 535, 808, 855
Hpy188III	TCNNGA	2 cut(s)	87, 714
Hpy8I	GTNNAC	2 cut(s)	266, 628
HpyAV	CCTTC	3 cut(s)	279, 372, 711
HpyCH4III	ACNGT	3 cut(s)	93, 406, 847
HpyCH4IV	ACGT	2 cut(s)	58, 697
HpyCH4V	TGCA	9 cut(s)	26, 114, 213, 241, 293, 397, 439, 704, 921
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 148, 206, 918
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	2 cut(s)	58, 697
Hsp92II	CATG	5 cut(s)	114, 213, 401, 601, 925
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	2 cut(s)	600, 649
Lsp1109I	GCAGC	3 cut(s)	55, 139, 225
LweI	GCATC	5 cut(s)	179, 222, 487, 625, 921
MaeI	CTAG	2 cut(s)	729, 794
MaeII	ACGT	2 cut(s)	58, 697
MaeIII	GTNAC	7 cut(s)	203, 247, 346, 461, 581, 611, 641
MalI	GATC	2 cut(s)	602, 651
MboI	GATC	2 cut(s)	600, 649
MboII	GAAGA	2 cut(s)	16, 467
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	4 cut(s)	353, 448, 656, 877
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	8 cut(s)	190, 219, 326, 382, 677, 793, 802, 851
Mox20I	TGGCCA	1 cut(s)	20
Mph1103I	ATGCAT	2 cut(s)	215, 441
MroNI	GCCGGC	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	4 cut(s)	104, 420, 488, 782
MslI	CAYNNNNRTG	2 cut(s)	767, 920
Msp20I	TGGCCA	1 cut(s)	20
MspCI	CTTAAG	1 cut(s)	487
MspI	CCGG	2 cut(s)	143, 617
MspR9I	CCNGG	2 cut(s)	45, 617
MunI	CAATTG	1 cut(s)	656
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	4 cut(s)	68, 148, 206, 918
NaeI	GCCGGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	617
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	600, 649
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	5 cut(s)	114, 213, 401, 601, 925
NlaIV	GGNNCC	2 cut(s)	651, 825
NmuCI	GTSAC	3 cut(s)	346, 461, 641
NsiI	ATGCAT	2 cut(s)	215, 441
NspI	RCATGY	3 cut(s)	114, 213, 925
PaeI	GCATGC	3 cut(s)	114, 213, 925
PaeR7I	CTCGAG	1 cut(s)	63
PctI	GAATGC	1 cut(s)	439
PdiI	GCCGGC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	13, 157, 542
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	4 cut(s)	50, 70, 129, 240
PleI	GAGTC	1 cut(s)	141
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	141
Ppu21I	YACGTR	2 cut(s)	59, 698
Psp6I	CCWGG	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	59
PspEI	GGTNACC	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	651, 825
PspXI	VCTCGAGB	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	649
RseI	CAYNNNNRTG	2 cut(s)	767, 920
SaqAI	TTAA	4 cut(s)	104, 420, 488, 782
SatI	GCNGC	4 cut(s)	49, 69, 128, 239
Sau3AI	GATC	2 cut(s)	600, 649
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	45, 617
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	5 cut(s)	179, 222, 487, 625, 921
SfcI	CTRYAG	2 cut(s)	239, 372
Sfr274I	CTCGAG	1 cut(s)	63
SlaI	CTCGAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	2 cut(s)	767, 920
SmlI	CTYRAG	2 cut(s)	63, 487
SmoI	CTYRAG	2 cut(s)	63, 487
SphI	GCATGC	3 cut(s)	114, 213, 925
Sse9I	AATT	4 cut(s)	353, 448, 656, 877
SsiI	CCGC	2 cut(s)	49, 772
SspMI	CTAG	2 cut(s)	729, 794
StyD4I	CCNGG	2 cut(s)	43, 615
TaaI	ACNGT	3 cut(s)	93, 406, 847
TaiI	ACGT	2 cut(s)	61, 700
TaqI	TCGA	2 cut(s)	64, 365
TasI	AATT	4 cut(s)	353, 448, 656, 877
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	3 cut(s)	13, 157, 542
Tru1I	TTAA	4 cut(s)	104, 420, 488, 782
Tru9I	TTAA	4 cut(s)	104, 420, 488, 782
TscAI	CASTG	2 cut(s)	28, 240
TseFI	GTSAC	3 cut(s)	346, 461, 641
TseI	GCWGC	3 cut(s)	68, 127, 238
Tsp45I	GTSAC	3 cut(s)	346, 461, 641
TspDTI	ATGAA	7 cut(s)	17, 63, 261, 414, 461, 464, 608
TspRI	CASTG	2 cut(s)	28, 240
Van91I	CCANNNNNTGG	1 cut(s)	517
Vha464I	CTTAAG	1 cut(s)	487
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	3 cut(s)	114, 213, 925
XhoI	CTCGAG	1 cut(s)	63
XspI	CTAG	2 cut(s)	729, 794
Zsp2I	ATGCAT	2 cut(s)	215, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.