Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005771

Physical Location & Seq

Genomic Coordinates Reverse (-)

21408463 .. 21411643

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1216400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGAGAGAAAATACAGTCACTGCACATGTTAGAGAACTTCCTGGTAGAATAACACGTGCTCGAGCTGCTTCACTTCATACATCTGGACATATTCCCCCACCTAAACCACCCTCACAACAGAGTCAGAAGCAGGCTTTGCGGACAAATTCAAAGAGAGCTGCCACGGATGAGAACATTACAAACGCTACTGGTAATGCATGTATCCAACGCAAGAGGAGGGCAGTACTTCAGGATGCGACCAATGCTTTCTGTAAACCTTCATATGCAAACTGCTTCAATGCAACTAAAATTAAGGCTAAGAACAATAAGCCAACTAAAAAGGGTCAGGCAAAGCTGATGGAAATGGCCTCTTCCGTTGCTGGAGATTCAAAAACCGAGGTTTTGGACGGAACAGTCAAGCTAGAACTTAAATCAGACGAATTTTGGTGTACAATTAATTTGGAAGATGGCAACAGATTTATGAGGTCAACTAAGGATGTGAAAGATATTAATCAGTTGGAGAATCAGATTTCTGGAGTGGCTCCAAAATTCCAAAGCCCTTCGTATAAAGATAATGGTAGTCTTTCAGCAGACATGGTTACGTCAAGCAACCAGCCTATTGTTAACATTGATGCGGATTACAAGGATCCTCTTTTGTGTAGCCTCTATGCCCCTGATATCTATAACCATTCAAGTGTTGCAGAGCTTGACAGAAGGCGACATGCCAGTTTTATGGAAACAATACAGCAAGATATCACCAAAAGTATGAGGGGGATTTTAATCGATTGGCTTGCGCGCTGTGTGGCCCGAGCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010374 GO:0010389 GO:0010440 GO:0010444 GO:0010564 GO:0022402 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901576 GO:1901987 GO:1901990 GO:1902749 GO:1905392 GO:1905393 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

267

Amino Acids

29.55

Weight (kDa)

9.49

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80370
fragaria_vesca	FvH4_6g30830 FvH4_6g30830 FvH4_6g30830
malus_domestica	MD09G1216400.v1.1 MD17G1198500.v1.1
prunus_persica	Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1 Prupe.3G075200_v2.0.a1
pyrus_communis	pycom17g20330
rosa_chinensis	RchiOBHm_Chr2g0137271
rosa_laevigata	RLG00000019646
rosa_multiflora	Rmu_sc0000894.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107240
rosa_rugosa	Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340500 Rorug02G0340600
rosa_samantha	Rh2AG388900 Rh2BG396700 Rh2CG376400 Rh2DG411700
rosa_wichuraiana	Rw2G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AccII	CGCG	1 cut(s)	778
AciI	CCGC	2 cut(s)	142, 617
AclWI	GGATC	2 cut(s)	623, 636
AcsI	RAATTY	3 cut(s)	148, 422, 530
AcuI	CTGAAG	1 cut(s)	215
AcvI	CACGTG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	228, 433
AflIII	ACRYGT	2 cut(s)	28, 56
AgsI	TTSAA	4 cut(s)	153, 280, 372, 675
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	5 cut(s)	68, 161, 337, 403, 688
AluI	AGCT	5 cut(s)	68, 161, 337, 403, 688
Alw21I	GWGCWC	2 cut(s)	64, 796
AlwI	GGATC	2 cut(s)	623, 636
AlwNI	CAGNNNCTG	1 cut(s)	23
Ama87I	CYCGRG	2 cut(s)	63, 789
AoxI	GGCC	2 cut(s)	348, 786
ApeKI	GCWGC	2 cut(s)	68, 161
ApoI	RAATTY	3 cut(s)	148, 422, 530
AseI	ATTAAT	2 cut(s)	438, 492
AspLEI	GCGC	2 cut(s)	778, 780
AspS9I	GGNCC	1 cut(s)	787
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	2 cut(s)	63, 789
BamHI	GGATCC	1 cut(s)	628
BbrPI	CACGTG	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	64, 796
BbvI	GCAGC	2 cut(s)	55, 148
BccI	CCATC	2 cut(s)	334, 443
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	69, 162
BlsI	GCNGC	2 cut(s)	70, 163
BmcAI	AGTACT	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	45
BmeT110I	CYCGRG	2 cut(s)	63, 789
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	2 cut(s)	525, 630
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	226, 604
BpmI	CTGGAG	2 cut(s)	384, 537
Bsa29I	ATCGAT	1 cut(s)	765
BsaAI	YACGTR	1 cut(s)	59
BsaBI	GATNNNNATC	2 cut(s)	492, 761
BsaJI	CCNNGG	2 cut(s)	165, 378
Bse1I	ACTGG	2 cut(s)	196, 708
Bse8I	GATNNNNATC	2 cut(s)	492, 761
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	165, 378
BseGI	GGATG	3 cut(s)	175, 241, 484
BseJI	GATNNNNATC	2 cut(s)	492, 761
BseNI	ACTGG	2 cut(s)	196, 708
BsePI	GCGCGC	1 cut(s)	776
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	55, 148
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	778
BshFI	GGCC	2 cut(s)	350, 788
BshVI	ATCGAT	1 cut(s)	765
BsiHKAI	GWGCWC	2 cut(s)	64, 796
BsiHKCI	CYCGRG	2 cut(s)	63, 789
BsnI	GGCC	2 cut(s)	350, 788
BsoBI	CYCGRG	2 cut(s)	63, 789
Bsp1286I	GDGCHC	2 cut(s)	64, 796
Bsp1407I	TGTACA	1 cut(s)	431
Bsp143I	GATC	1 cut(s)	628
BspACI	CCGC	2 cut(s)	142, 617
BspANI	GGCC	2 cut(s)	350, 788
BspDI	ATCGAT	1 cut(s)	765
BspFNI	CGCG	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	525, 630
BspPI	GGATC	2 cut(s)	623, 636
BsrGI	TGTACA	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	196, 708
BssECI	CCNNGG	2 cut(s)	165, 378
BssHII	GCGCGC	1 cut(s)	776
BssMI	GATC	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	19, 397, 798
Bst6I	CTCTTC	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	431
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	135, 774, 778
BstDEI	CTNAG	2 cut(s)	300, 474
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	175, 241, 484
BstFNI	CGCG	1 cut(s)	778
BstHHI	GCGC	2 cut(s)	778, 780
BstKTI	GATC	1 cut(s)	631
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 139, 245
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	3 cut(s)	32, 204, 707
BstSCI	CCNGG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	778
BstV1I	GCAGC	2 cut(s)	55, 148
BstX2I	RGATCY	1 cut(s)	628
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	628
Bsu15I	ATCGAT	1 cut(s)	765
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	350, 788
BsuTUI	ATCGAT	1 cut(s)	765
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	175, 241, 484
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	3 cut(s)	135, 774, 778
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	2 cut(s)	778, 780
Cfr13I	GGNCC	1 cut(s)	787
ClaI	ATCGAT	1 cut(s)	765
Csp6I	GTAC	2 cut(s)	227, 432
CviAII	CATG	4 cut(s)	29, 201, 577, 704
CviQI	GTAC	2 cut(s)	227, 432
DdeI	CTNAG	2 cut(s)	300, 474
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco32I	GATATC	2 cut(s)	661, 736
Eco57I	CTGAAG	1 cut(s)	215
Eco72I	CACGTG	1 cut(s)	59
Eco88I	CYCGRG	2 cut(s)	63, 789
EcoRII	CCWGG	1 cut(s)	43
EcoRV	GATATC	2 cut(s)	661, 736
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	4 cut(s)	32, 204, 580, 707
FatI	CATG	4 cut(s)	28, 200, 576, 703
FauNDI	CATATG	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	69, 162
FokI	GGATG	3 cut(s)	182, 248, 491
Fsp4HI	GCNGC	2 cut(s)	69, 162
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	2 cut(s)	777, 779
GluI	GCNGC	2 cut(s)	69, 162
GsuI	CTGGAG	2 cut(s)	384, 537
HaeIII	GGCC	2 cut(s)	350, 788
HhaI	GCGC	2 cut(s)	778, 780
Hin1II	CATG	4 cut(s)	32, 204, 580, 707
Hin6I	GCGC	2 cut(s)	776, 778
HinP1I	GCGC	2 cut(s)	776, 778
HincII	GTYRAC	2 cut(s)	471, 607
HindII	GTYRAC	2 cut(s)	471, 607
HinfI	GANTC	3 cut(s)	124, 368, 505
HpaI	GTTAAC	1 cut(s)	607
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	4 cut(s)	257, 432, 471, 607
Hpy188I	TCNGA	3 cut(s)	129, 418, 510
Hpy188III	TCNNGA	3 cut(s)	87, 233, 516
Hpy8I	GTNNAC	4 cut(s)	257, 432, 471, 607
HpyAV	CCTTC	3 cut(s)	270, 552, 690
HpyCH4III	ACNGT	3 cut(s)	19, 397, 798
HpyCH4IV	ACGT	2 cut(s)	58, 584
HpyCH4V	TGCA	5 cut(s)	26, 200, 269, 284, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 139, 245
HpyF3I	CTNAG	2 cut(s)	300, 474
HpySE526I	ACGT	2 cut(s)	58, 584
Hsp92II	CATG	4 cut(s)	32, 204, 580, 707
HspAI	GCGC	2 cut(s)	776, 778
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	2 cut(s)	55, 148
LweI	GCATC	2 cut(s)	226, 604
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	2 cut(s)	58, 584
MaeIII	GTNAC	2 cut(s)	19, 580
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	3 cut(s)	16, 345, 458
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	2 cut(s)	64, 796
MluCI	AATT	6 cut(s)	148, 291, 422, 435, 439, 530
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	2 cut(s)	232, 480
MnlI	CCTC	9 cut(s)	124, 210, 213, 361, 373, 459, 642, 656, 744
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	6 cut(s)	294, 411, 438, 492, 606, 761
MslI	CAYNNNNRTG	1 cut(s)	675
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	778
MwoI	GCNNNNNNNGC	3 cut(s)	68, 139, 245
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	4 cut(s)	32, 204, 580, 707
NlaIV	GGNNCC	2 cut(s)	525, 630
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	3 cut(s)	32, 204, 707
PaeR7I	CTCGAG	1 cut(s)	63
PauI	GCGCGC	1 cut(s)	776
PciI	ACATGT	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	368, 505
PkrI	GCNGC	2 cut(s)	70, 163
PleI	GAGTC	1 cut(s)	132
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	59
PscI	ACATGT	1 cut(s)	28
PshBI	ATTAAT	2 cut(s)	438, 492
Psp6I	CCWGG	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	525, 630
PspPI	GGNCC	1 cut(s)	787
PspXI	VCTCGAGB	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	628
PteI	GCGCGC	1 cut(s)	776
RsaI	GTAC	2 cut(s)	228, 433
RsaNI	GTAC	2 cut(s)	227, 432
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	6 cut(s)	294, 411, 438, 492, 606, 761
SatI	GCNGC	2 cut(s)	69, 162
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	1 cut(s)	787
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	64, 796
SfaNI	GCATC	2 cut(s)	226, 604
Sfr274I	CTCGAG	1 cut(s)	63
SlaI	CTCGAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	6 cut(s)	148, 291, 422, 435, 439, 530
SsiI	CCGC	2 cut(s)	142, 617
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	3 cut(s)	19, 397, 798
TaiI	ACGT	2 cut(s)	61, 587
TaqI	TCGA	2 cut(s)	64, 765
TasI	AATT	6 cut(s)	148, 291, 422, 435, 439, 530
TatI	WGTACW	2 cut(s)	226, 431
TfiI	GAWTC	2 cut(s)	368, 505
Tru1I	TTAA	6 cut(s)	294, 411, 438, 492, 606, 761
Tru9I	TTAA	6 cut(s)	294, 411, 438, 492, 606, 761
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	68, 161
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	17, 68, 252
TspGWI	ACGGA	3 cut(s)	182, 346, 405
TspRI	CASTG	1 cut(s)	28
VspI	ATTAAT	2 cut(s)	438, 492
XapI	RAATTY	3 cut(s)	148, 422, 530
XceI	RCATGY	3 cut(s)	32, 204, 707
XhoI	CTCGAG	1 cut(s)	63
XspI	CTAG	1 cut(s)	404
ZrmI	AGTACT	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.