MD17G1198500.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
23895983 .. 23908514
12532 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1198500.v1.1.491

Sequence Viewer

Length: 1440 bp
ATGAAGAGAGAAAATATGGTCACCGCAAATGTTAGGGAGCTTCCTGGTAGAATAACACGTGCTCGAGCTGCTGCACTTCATACATCTGGACATATTCCCCCACCAAAACCACCCACACAACAGAATCAGAAGCAGGCTTTGCGAACAAATTCAAAGAGAGCTTCCACGGATGAGAACAATACAAAAGCTACTGGTAATGCATGTATCCAACGCAAGAGGAGGGCAGTACTTCAAGATGTGACCAACGCTCTCTGTAAACCTTCATATGGAAACTGCATCAATGCAACTAAAATTCAGGCTAAAAACAGTAAGCCAGCTAAAAAGGGTCAGGCAAAGCTGACGGAAATGGCCCCTTCTGTTGCTGTAGATTCAAAAACCAATGTTGTGCAGGGAACAGTAAAACCAGAAATTAAATCAGACGAATTTTGCCGCTCAATCAATGTGGAAGATGGCAACATACTTATGCGGTCAACTAAGGATGTGAAAGATGTTCGTCCGTTGGAAAATCGTAGTTCTGGAGTGAATCCAAAGTTCCAAAGCCCTGCGTATAAAGACAATGGTAGTCTTTCAGCGGACACGGTTACATCAGGCAACCAGCATATTGTTAACATTGATGCAGATTACAAGGACCCTCTATTGTGTAGCCTCTATGCCCCTGACATCTATAACCATTTATCTGTTGCAGAGCTTGAAAGAAGGCCATATGCTGGTTTTATGGAAACAATACAGCAAGATATCACCAAAACTATGAGGGGGATTTTAATCGATTGGCTTGTAGAGGTGTCAGAGGAATATAAGGTGGTGCCAGATACGCTTTACCTCACAGTTTATCTCATCGATTGGTTTCTCTGTCACAATTATATTGAAAGGAATAGACTTCAATTGCTTGGCATCACTTGCTTGCTGATCGCCTCGAAATATGAAGAAATTTGTGCACCACGTGTTGAAGAACTTTGTTTCATGACAGACAACACTTACTCGAGAGAGGAGGTGCTGAAAATGGAGAGTCAAGTACTGAAGTATTTTGGTTTTCAACTATTTGCACCAACTACAAAAACGTTCCTCAGGAGATTTCTTCGAGCAGCTCAAGCTTCTTATAAGAGTCCTAGCCTTGAACTGGAGTACTTGGCCAATTATCTTGCTGAACTAACTTTGGTTGACTATAGCTTCTTGAATTTCCTTCCGTCTGTCATTGCTGCATCAGCTGTTTTTCTTTCCAAATGGACCTTGGATCAGTCCAGCCACCCATGGAATCCAATACTCGAATACTATACTCGTTACAAGCCATTGGATTTGAAGGTCACAGTTCTTGCTTTGCAAGAATTACAGTTGAACACTAGTGGTTGTCCTCTGAATGCCGTGCGCATGAAGTATAGACACCAAAAGTACAAATCTGTGGCGGGTTTGTCATCCCCGAAACTCCTTGAAACGCTATTTTGA

Protein Analysis

480

Amino Acids

54.22

Weight (kDa)

9.1

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 220 - 346 6.8e-42 Cyclin, N-terminal domain
Cyclin_C PF02984 349 - 471 1.5e-33 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1098
Acc16I TGCGCA 1 cut(s) 1364
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 432
AciI CCGC 5 cut(s) 24, 430, 466, 572, 1400
AclI AACGTT 1 cut(s) 1058
AclWI GGATC 1 cut(s) 1239
AcoI YGGCCR 1 cut(s) 1128
AcsI RAATTY 5 cut(s) 148, 291, 422, 927, 1174
AcuI CTGAAG 1 cut(s) 1037
AcvI CACGTG 2 cut(s) 59, 941
AdeI CACNNNGTG 1 cut(s) 941
AfaI GTAC 4 cut(s) 228, 1014, 1124, 1388
AfiI CCNNNNNNNGG 3 cut(s) 266, 707, 1117
AflIII ACRYGT 2 cut(s) 56, 940
AhlI ACTAGT 1 cut(s) 1337
AjnI CCWGG 1 cut(s) 43
Alw21I GWGCWC 2 cut(s) 64, 937
Alw44I GTGCAC 1 cut(s) 933
AlwI GGATC 1 cut(s) 1239
Ama87I CYCGRG 2 cut(s) 63, 979
AoxI GGCC 3 cut(s) 348, 698, 1128
ApaLI GTGCAC 1 cut(s) 933
ApeKI GCWGC 4 cut(s) 68, 71, 1082, 1196
ApoI RAATTY 5 cut(s) 148, 291, 422, 927, 1174
Asp700I GAANNNNTTC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 1365
AspS9I GGNCC 3 cut(s) 349, 628, 1224
AsuHPI GGTGA 2 cut(s) 13, 730
AvaI CYCGRG 2 cut(s) 63, 979
AvaII GGWCC 2 cut(s) 628, 1224
AxyI CCTNAGG 1 cut(s) 1064
BaeGI GKGCMC 1 cut(s) 937
BalI TGGCCA 1 cut(s) 1130
BanI GGYRCC 1 cut(s) 802
BbrPI CACGTG 2 cut(s) 59, 941
Bbv12I GWGCWC 2 cut(s) 64, 937
BbvI GCAGC 4 cut(s) 55, 58, 1094, 1183
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 1343
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 215
BcuI ACTAGT 1 cut(s) 1337
BfaI CTAG 2 cut(s) 1107, 1338
BfmI CTRYAG 2 cut(s) 363, 1162
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 5 cut(s) 69, 72, 430, 1083, 1197
BlsI GCNGC 5 cut(s) 70, 73, 431, 1084, 1198
BmcAI AGTACT 3 cut(s) 228, 1014, 1124
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 2 cut(s) 628, 1224
BmeT110I CYCGRG 2 cut(s) 63, 979
BmgT120I GGNCC 3 cut(s) 349, 628, 1224
BmiI GGNNCC 3 cut(s) 351, 630, 804
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 4 cut(s) 285, 604, 900, 1208
BpmI CTGGAG 2 cut(s) 537, 1139
BpuEI CTTGAG 1 cut(s) 1071
Bsa29I ATCGAT 2 cut(s) 765, 837
BsaAI YACGTR 2 cut(s) 59, 941
BsaBI GATNNNNATC 1 cut(s) 761
BsaJI CCNNGG 3 cut(s) 165, 1227, 1247
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 707, 1117
Bse1I ACTGG 2 cut(s) 196, 1122
Bse21I CCTNAGG 1 cut(s) 1064
Bse3DI GCAATG 1 cut(s) 1191
Bse8I GATNNNNATC 1 cut(s) 761
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 2 cut(s) 765, 837
BseDI CCNNGG 3 cut(s) 165, 1227, 1247
BseGI GGATG 3 cut(s) 175, 484, 1409
BseJI GATNNNNATC 1 cut(s) 761
BseLI CCNNNNNNNGG 3 cut(s) 266, 707, 1117
BseMI GCAATG 1 cut(s) 1191
BseMII CTCAG 1 cut(s) 1078
BseNI ACTGG 2 cut(s) 196, 1122
BseRI GAGGAG 2 cut(s) 232, 1001
BseSI GKGCMC 1 cut(s) 937
BseXI GCAGC 4 cut(s) 55, 58, 1094, 1183
BsgI GTGCAG 2 cut(s) 57, 407
BshFI GGCC 3 cut(s) 350, 700, 1130
BshNI GGYRCC 1 cut(s) 802
BshVI ATCGAT 2 cut(s) 765, 837
BsiHKAI GWGCWC 2 cut(s) 64, 937
BsiHKCI CYCGRG 2 cut(s) 63, 979
BslI CCNNNNNNNGG 3 cut(s) 266, 707, 1117
BsmI GAATGC 1 cut(s) 1360
BsnI GGCC 3 cut(s) 350, 700, 1130
BsoBI CYCGRG 2 cut(s) 63, 979
Bsp1286I GDGCHC 2 cut(s) 64, 937
Bsp143I GATC 2 cut(s) 906, 1231
Bsp19I CCATGG 1 cut(s) 1247
BspACI CCGC 5 cut(s) 24, 430, 466, 572, 1400
BspANI GGCC 3 cut(s) 350, 700, 1130
BspCNI CTCAG 1 cut(s) 1077
BspDI ATCGAT 2 cut(s) 765, 837
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 3 cut(s) 351, 630, 804
BspPI GGATC 1 cut(s) 1239
BspT107I GGYRCC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 1191
BsrI ACTGG 2 cut(s) 196, 1122
BssECI CCNNGG 3 cut(s) 165, 1227, 1247
BssMI GATC 2 cut(s) 906, 1231
BssT1I CCWWGG 2 cut(s) 1227, 1247
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 6 cut(s) 308, 397, 580, 826, 1306, 1329
BstAPI GCANNNNNTGC 2 cut(s) 139, 897
BstBAI YACGTR 2 cut(s) 59, 941
BstC8I GCNNGC 3 cut(s) 135, 315, 902
BstDEI CTNAG 2 cut(s) 474, 1064
BstDSI CCRYGG 2 cut(s) 165, 1247
BstEII GGTNACC 1 cut(s) 19
BstF5I GGATG 3 cut(s) 175, 484, 1409
BstHHI GCGC 1 cut(s) 1365
BstKTI GATC 2 cut(s) 909, 1234
BstMBI GATC 2 cut(s) 906, 1231
BstMWI GCNNNNNNNGC 6 cut(s) 68, 139, 811, 897, 1088, 1202
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 204
BstPI GGTNACC 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 363, 1162
BstSLI GKGCMC 1 cut(s) 937
BstV1I GCAGC 4 cut(s) 55, 58, 1094, 1183
Bsu15I ATCGAT 2 cut(s) 765, 837
Bsu36I CCTNAGG 1 cut(s) 1064
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 3 cut(s) 350, 700, 1130
BsuTUI ATCGAT 2 cut(s) 765, 837
BtgI CCRYGG 2 cut(s) 165, 1247
BtsCI GGATG 3 cut(s) 175, 484, 1409
Cac8I GCNNGC 3 cut(s) 135, 315, 902
CciI TCATGA 1 cut(s) 960
CfoI GCGC 1 cut(s) 1365
Cfr13I GGNCC 3 cut(s) 349, 628, 1224
ClaI ATCGAT 2 cut(s) 765, 837
Csp6I GTAC 4 cut(s) 227, 1013, 1123, 1387
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CviAII CATG 4 cut(s) 201, 961, 1248, 1366
CviQI GTAC 4 cut(s) 227, 1013, 1123, 1387
DdeI CTNAG 2 cut(s) 474, 1064
DpnI GATC 2 cut(s) 908, 1233
DpnII GATC 2 cut(s) 906, 1231
DraIII CACNNNGTG 1 cut(s) 941
EaeI YGGCCR 1 cut(s) 1128
Eco130I CCWWGG 2 cut(s) 1227, 1247
Eco32I GATATC 1 cut(s) 736
Eco47I GGWCC 2 cut(s) 628, 1224
Eco57I CTGAAG 1 cut(s) 1037
Eco72I CACGTG 2 cut(s) 59, 941
Eco81I CCTNAGG 1 cut(s) 1064
Eco88I CYCGRG 2 cut(s) 63, 979
Eco91I GGTNACC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 43
EcoRV GATATC 1 cut(s) 736
EcoT14I CCWWGG 2 cut(s) 1227, 1247
EcoT22I ATGCAT 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 1227, 1247
FaeI CATG 4 cut(s) 204, 964, 1251, 1369
FatI CATG 4 cut(s) 200, 960, 1247, 1365
FauI CCCGC 1 cut(s) 1393
FauNDI CATATG 2 cut(s) 265, 703
Fnu4HI GCNGC 5 cut(s) 69, 72, 430, 1083, 1197
FokI GGATG 3 cut(s) 182, 491, 1396
Fsp4HI GCNGC 5 cut(s) 69, 72, 430, 1083, 1197
FspAI RTGCGCAY 1 cut(s) 1364
FspBI CTAG 2 cut(s) 1107, 1338
FspI TGCGCA 1 cut(s) 1364
GlaI GCGC 1 cut(s) 1364
GluI GCNGC 5 cut(s) 69, 72, 430, 1083, 1197
GsuI CTGGAG 2 cut(s) 537, 1139
HaeIII GGCC 3 cut(s) 350, 700, 1130
HhaI GCGC 1 cut(s) 1365
Hin1II CATG 4 cut(s) 204, 964, 1251, 1369
Hin6I GCGC 1 cut(s) 1363
HinP1I GCGC 1 cut(s) 1363
HincII GTYRAC 3 cut(s) 471, 607, 1159
HindII GTYRAC 3 cut(s) 471, 607, 1159
HindIII AAGCTT 1 cut(s) 1089
HinfI GANTC 6 cut(s) 124, 368, 523, 1006, 1102, 1252
HpaI GTTAAC 1 cut(s) 607
HphI GGTGA 2 cut(s) 13, 730
Hpy166II GTNNAC 5 cut(s) 257, 471, 607, 935, 1159
Hpy188I TCNGA 4 cut(s) 129, 418, 787, 1353
Hpy188III TCNNGA 7 cut(s) 87, 233, 516, 961, 981, 1066, 1171
Hpy8I GTNNAC 5 cut(s) 257, 471, 607, 935, 1159
HpyAV CCTTC 5 cut(s) 270, 363, 690, 1190, 1291
HpyCH4III ACNGT 6 cut(s) 308, 397, 580, 826, 1306, 1329
HpyCH4IV ACGT 3 cut(s) 58, 940, 1058
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 139, 811, 897, 1088, 1202
HpyF3I CTNAG 2 cut(s) 474, 1064
HpySE526I ACGT 3 cut(s) 58, 940, 1058
Hsp92II CATG 4 cut(s) 204, 964, 1251, 1369
HspAI GCGC 1 cut(s) 1363
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 2 cut(s) 906, 1231
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 4 cut(s) 55, 58, 1094, 1183
LweI GCATC 4 cut(s) 285, 604, 900, 1208
MaeI CTAG 2 cut(s) 1107, 1338
MaeII ACGT 3 cut(s) 58, 940, 1058
MaeIII GTNAC 6 cut(s) 19, 238, 580, 851, 1277, 1300
MalI GATC 2 cut(s) 908, 1233
MbiI CCGCTC 1 cut(s) 432
MboI GATC 2 cut(s) 906, 1231
MboII GAAGA 5 cut(s) 16, 458, 935, 959, 1067
MfeI CAATTG 1 cut(s) 881
MhlI GDGCHC 2 cut(s) 64, 937
MlsI TGGCCA 1 cut(s) 1130
MluNI TGGCCA 1 cut(s) 1130
MlyI GAGTC 2 cut(s) 1015, 1111
MmeI TCCRAC 2 cut(s) 232, 480
Mox20I TGGCCA 1 cut(s) 1130
Mph1103I ATGCAT 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 148
MscI TGGCCA 1 cut(s) 1130
MseI TTAA 3 cut(s) 411, 606, 761
MslI CAYNNNNRTG 1 cut(s) 461
Msp20I TGGCCA 1 cut(s) 1130
MspA1I CMGCKG 2 cut(s) 572, 1205
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 881
Mva1269I GAATGC 1 cut(s) 1360
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 6 cut(s) 68, 139, 811, 897, 1088, 1202
NcoI CCATGG 1 cut(s) 1247
NdeI CATATG 2 cut(s) 265, 703
NdeII GATC 2 cut(s) 906, 1231
NlaIII CATG 4 cut(s) 204, 964, 1251, 1369
NlaIV GGNNCC 3 cut(s) 351, 630, 804
NmuCI GTSAC 4 cut(s) 19, 238, 851, 1300
NsbI TGCGCA 1 cut(s) 1364
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 1 cut(s) 204
PaeR7I CTCGAG 2 cut(s) 63, 979
PagI TCATGA 1 cut(s) 960
PctI GAATGC 1 cut(s) 1360
PdmI GAANNNNTTC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 124, 368, 523, 1252
PflMI CCANNNNNTGG 1 cut(s) 707
PkrI GCNGC 5 cut(s) 70, 73, 431, 1084, 1198
PleI GAGTC 2 cut(s) 1014, 1110
PmaCI CACGTG 2 cut(s) 59, 941
PmlI CACGTG 2 cut(s) 59, 941
PpsI GAGTC 2 cut(s) 1014, 1110
Ppu21I YACGTR 2 cut(s) 59, 941
PpuMI RGGWCCY 1 cut(s) 628
PsiI TTATAA 1 cut(s) 1098
Psp1406I AACGTT 1 cut(s) 1058
Psp5II RGGWCCY 1 cut(s) 628
Psp6I CCWGG 1 cut(s) 43
PspCI CACGTG 2 cut(s) 59, 941
PspEI GGTNACC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 351, 630, 804
PspPI GGNCC 3 cut(s) 349, 628, 1224
PspPPI RGGWCCY 1 cut(s) 628
PspXI VCTCGAGB 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 4 cut(s) 228, 1014, 1124, 1388
RsaNI GTAC 4 cut(s) 227, 1013, 1123, 1387
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 3 cut(s) 411, 606, 761
SatI GCNGC 5 cut(s) 69, 72, 430, 1083, 1197
Sau3AI GATC 2 cut(s) 906, 1231
Sau96I GGNCC 3 cut(s) 349, 628, 1224
ScaI AGTACT 3 cut(s) 228, 1014, 1124
SchI GAGTC 2 cut(s) 1015, 1111
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 2 cut(s) 64, 937
SfaNI GCATC 4 cut(s) 285, 604, 900, 1208
SfcI CTRYAG 2 cut(s) 363, 1162
Sfr274I CTCGAG 2 cut(s) 63, 979
SinI GGWCC 2 cut(s) 628, 1224
SlaI CTCGAG 2 cut(s) 63, 979
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 3 cut(s) 63, 979, 1086
SmoI CTYRAG 3 cut(s) 63, 979, 1086
SpeI ACTAGT 1 cut(s) 1337
SsiI CCGC 5 cut(s) 24, 430, 466, 572, 1400
SspMI CTAG 2 cut(s) 1107, 1338
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 2 cut(s) 1227, 1247
TaaI ACNGT 6 cut(s) 308, 397, 580, 826, 1306, 1329
TaiI ACGT 3 cut(s) 61, 943, 1061
TaqI TCGA 7 cut(s) 64, 765, 837, 914, 980, 1078, 1263
TatI WGTACW 4 cut(s) 226, 1012, 1122, 1386
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 4 cut(s) 124, 368, 523, 1252
Tru1I TTAA 3 cut(s) 411, 606, 761
Tru9I TTAA 3 cut(s) 411, 606, 761
TseFI GTSAC 4 cut(s) 19, 238, 851, 1300
TseI GCWGC 4 cut(s) 68, 71, 1082, 1196
Tsp45I GTSAC 4 cut(s) 19, 238, 851, 1300
TspDTI ATGAA 6 cut(s) 17, 68, 252, 936, 949, 1382
TspGWI ACGGA 4 cut(s) 182, 356, 486, 1173
Van91I CCANNNNNTGG 1 cut(s) 707
VneI GTGCAC 1 cut(s) 933
VpaK11BI GGWCC 2 cut(s) 628, 1224
XapI RAATTY 5 cut(s) 148, 291, 422, 927, 1174
XceI RCATGY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 1225
XhoI CTCGAG 2 cut(s) 63, 979
XmnI GAANNNNTTC 1 cut(s) 148
XspI CTAG 2 cut(s) 1107, 1338
ZrmI AGTACT 3 cut(s) 228, 1014, 1124
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.