Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008460

Physical Location & Seq

Genomic Coordinates Forward (+)

30290325 .. 30292420

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGATGAATTGCCAGACCATTTGGTTTGGGACATTCTCAGTAAGCTTCATACTACCGATGACAGAAACTCGCTTTCACTCTCATGCAAACGTTTCTTCTCGCTGGACAACGAGCAAAGATACTCTCTGCGGATTGGTTGCGGTTTAGTTCCTGCATCCGATGCATTGCTTTCTCTCTGCAGGAGGTTTCCAAATCTTTCCAAAGTGGAGATTATATACTCAGGCTGGATGTCAAAACTTGGCAAACAAGTTGACGATCAAGGCCTTCTTGTCCTGACCACAAACTGTCATTCTCTCACTGATCTCACTCTGAGCTTCTGCACCTTCATCACCGATGTTGGCATAGGCCATTTGTCGTCGTGTCCAGAGCTTTCTTCGTTGAAGTTAAATTTCGCTCCCAGGATCACTGGTTGTGGTGTGTTGTCACTTGCTGTAGGATGCAAGAAACTCAGGAGACTTCATCTCATTCGATGCCTAAACGTTGCAAGTGTAGAGTGGTTGGAGTATTTCGGAAAGCTTGAGACTTTAGAAGAACTCTGTATCAAGAACTGCAGAGCCATTGGGGAAGGTGATTTGATCAAGCTGAGGAATAGCTGGCGAAAGCTGACAAGTCTGCAGTTTGAGGTAGATGCCAATTACAGGTACATGAAGGTTTACGACCAGTTAGATGTGGAACGGTGGCCCAAACAGTTGGTTCCCTGTGACAGTCTGGTGGAGCTCAGCCTCGGTAACTGCATCATAGCTCCTGGTAGAGGGCTCGCTTGTGTGCTGAGAAATTGCAAGAACCTGGAGAAGCTTCATCTGGACATGTGTACCGGTGTCAGCGACTCAGACATCATAGCATTGGTTCAGAAAGCTAGTCACCTAAGAAGCATCTCGCTCCGTGTCCCGTCCGATTTTACTCTGCCTCTCTTAAACAACATCACGTTAAGATTAACCGATGAAAGCCTCAGCGCCATAGCTCAACACTGCTCAAAGCTCGAATCTTTCAAGATATCTTTCTCAGACGGTGAATTCCCTTCCCTCTTCTCTTTCACACTCCAGGGGATAATCACTCTGATCCAGAAATGCCCAGTACGCGAGCTTTCTCTTGACCATGTGTGTGTATTCAACGACATGGGGATGGAGGCTCTATGTTCAGCTCAGAAACTTGAGATCTTAGAGCTTGTCCATTGCCAAGAAGTGAGCGATGAGGGGTTGATTCTGGTGAGCCAGTTTCCTTCTCTCAATGTGTTGAAGTTATCAAAATGTCTGGGAGTGACAGACGATGGAATGAGACCACTTGTTGGATCTCACAAGTTGGAGTTGCTTGTTGTTGAAGATTGTCCTCAGGTTTCAAGAAGAGGTGTTCATGGTGCTGCAACGTCTGTCTCGTTTAAGCAAGATTTGTCATGGATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

467

Amino Acids

52.18

Weight (kDa)

6.2

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	57 - 206	3.2e-06	Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885	PF25372	311 - 450	1.4e-09	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80570 AT1G80570 AT1G80570
fragaria_vesca	FvH4_6g29021 FvH4_6g29021
malus_domestica	MD17G1219000.v1.1
prunus_persica	Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1
pyrus_communis	pycom17g22380
rosa_chinensis	RchiOBHm_Chr2g0133701
rosa_laevigata	RLG00000019357
rosa_multiflora	Rmu_sc0000924.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110890
rosa_rugosa	Rorug02G0313100
rosa_samantha	Rh2AG366500 Rh2BG372100 Rh2CG349600 Rh2DG389000
rosa_wichuraiana	Rw2G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1286
AccII	CGCG	1 cut(s)	1080
AciI	CCGC	2 cut(s)	130, 141
AclI	AACGTT	2 cut(s)	91, 480
AclWI	GGATC	3 cut(s)	410, 1054, 1297
AcsI	RAATTY	2 cut(s)	388, 1013
AfaI	GTAC	3 cut(s)	644, 814, 1077
AfiI	CCNNNNNNNGG	3 cut(s)	639, 752, 1286
AflIII	ACRYGT	1 cut(s)	807
AgeI	ACCGGT	1 cut(s)	815
AgsI	TTSAA	6 cut(s)	382, 991, 1111, 1237, 1319, 1338
AjnI	CCWGG	4 cut(s)	398, 745, 786, 1041
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	4 cut(s)	448, 515, 1270, 1375
AlwI	GGATC	3 cut(s)	410, 1054, 1297
AoxI	GGCC	3 cut(s)	262, 346, 680
ApeKI	GCWGC	1 cut(s)	1358
ApoI	RAATTY	2 cut(s)	388, 1013
AsiGI	ACCGGT	1 cut(s)	815
AspLEI	GCGC	1 cut(s)	956
AspS9I	GGNCC	1 cut(s)	681
AsuHPI	GGTGA	5 cut(s)	322, 581, 854, 1022, 1219
AxyI	CCTNAGG	1 cut(s)	1329
BaeI	ACNNNNGTAYC	2 cut(s)	796, 829
BanII	GRGCYC	2 cut(s)	720, 759
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	2 cut(s)	584, 950
BbvI	GCAGC	1 cut(s)	1345
BccI	CCATC	2 cut(s)	1117, 1262
BciT130I	CCWGG	4 cut(s)	400, 747, 788, 1043
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	4 cut(s)	448, 515, 1270, 1375
BfaI	CTAG	1 cut(s)	858
BfmI	CTRYAG	4 cut(s)	178, 432, 550, 614
BfoI	RGCGCY	1 cut(s)	957
BglII	AGATCT	1 cut(s)	1155
BisI	GCNGC	1 cut(s)	1359
BlpI	GCTNAGC	1 cut(s)	719
BlsI	GCNGC	1 cut(s)	1360
Bme1390I	CCNGG	4 cut(s)	400, 747, 788, 1043
BmgT120I	GGNCC	1 cut(s)	681
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	4 cut(s)	400, 747, 788, 1043
BmrI	ACTGGG	1 cut(s)	1067
BmsI	GCATC	7 cut(s)	151, 164, 428, 461, 619, 744, 882
BmuI	ACTGGG	1 cut(s)	1067
BpmI	CTGGAG	2 cut(s)	809, 1025
Bpu10I	CCTNAGC	2 cut(s)	584, 950
Bpu1102I	GCTNAGC	1 cut(s)	719
BpuEI	CTTGAG	2 cut(s)	539, 1172
BsaI	GGTCTC	1 cut(s)	1270
BsaJI	CCNNGG	3 cut(s)	398, 724, 1042
BsaWI	WCCGGW	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	3 cut(s)	639, 752, 1286
Bse118I	RCCGGY	1 cut(s)	815
Bse1I	ACTGG	4 cut(s)	412, 661, 1073, 1213
Bse21I	CCTNAGG	1 cut(s)	1329
Bse3DI	GCAATG	2 cut(s)	164, 1171
BseBI	CCWGG	4 cut(s)	400, 747, 788, 1043
BseDI	CCNNGG	3 cut(s)	398, 724, 1042
BseGI	GGATG	6 cut(s)	10, 155, 234, 443, 1128, 1401
BseLI	CCNNNNNNNGG	3 cut(s)	639, 752, 1286
BseMI	GCAATG	2 cut(s)	164, 1171
BseNI	ACTGG	4 cut(s)	412, 661, 1073, 1213
BseXI	GCAGC	1 cut(s)	1345
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	1080
BshFI	GGCC	3 cut(s)	264, 348, 682
BshTI	ACCGGT	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	2 cut(s)	44, 872
BslI	CCNNNNNNNGG	3 cut(s)	639, 752, 1286
BsmAI	GTCTC	4 cut(s)	448, 515, 1270, 1375
BsmFI	GGGAC	2 cut(s)	44, 872
BsnI	GGCC	3 cut(s)	264, 348, 682
Bso31I	GGTCTC	1 cut(s)	1270
Bsp1286I	GDGCHC	2 cut(s)	720, 759
Bsp143I	GATC	7 cut(s)	256, 301, 402, 576, 1059, 1155, 1289
Bsp1720I	GCTNAGC	1 cut(s)	719
BspACI	CCGC	2 cut(s)	130, 141
BspANI	GGCC	3 cut(s)	264, 348, 682
BspFNI	CGCG	1 cut(s)	1080
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	3 cut(s)	182, 554, 618
BspPI	GGATC	3 cut(s)	410, 1054, 1297
BspTNI	GGTCTC	1 cut(s)	1270
BsrDI	GCAATG	2 cut(s)	164, 1171
BsrFI	RCCGGY	1 cut(s)	815
BsrI	ACTGG	4 cut(s)	412, 661, 1073, 1213
BssAI	RCCGGY	1 cut(s)	815
BssECI	CCNNGG	3 cut(s)	398, 724, 1042
BssMI	GATC	7 cut(s)	256, 301, 402, 576, 1059, 1155, 1289
Bst2UI	CCWGG	4 cut(s)	400, 747, 788, 1043
Bst4CI	ACNGT	5 cut(s)	287, 678, 690, 707, 1010
Bst6I	CTCTTC	2 cut(s)	1031, 1336
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	3 cut(s)	596, 759, 1082
BstENI	CCTNNNNNAGG	1 cut(s)	750
BstF5I	GGATG	6 cut(s)	10, 155, 234, 443, 1128, 1401
BstFNI	CGCG	1 cut(s)	1080
BstH2I	RGCGCY	1 cut(s)	957
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	7 cut(s)	259, 304, 405, 579, 1062, 1158, 1292
BstMAI	GTCTC	4 cut(s)	448, 515, 1270, 1375
BstMBI	GATC	7 cut(s)	256, 301, 402, 576, 1059, 1155, 1289
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 1077
BstNI	CCWGG	4 cut(s)	400, 747, 788, 1043
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	4 cut(s)	398, 745, 786, 1041
BstSFI	CTRYAG	4 cut(s)	178, 432, 550, 614
BstUI	CGCG	1 cut(s)	1080
BstV1I	GCAGC	1 cut(s)	1345
BstX2I	RGATCY	2 cut(s)	1155, 1289
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	2 cut(s)	1155, 1289
Bsu36I	CCTNAGG	1 cut(s)	1329
BsuRI	GGCC	3 cut(s)	264, 348, 682
BtgZI	GCGATG	1 cut(s)	1203
BtsCI	GGATG	6 cut(s)	10, 155, 234, 443, 1128, 1401
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	3 cut(s)	297, 405, 967
Cac8I	GCNNGC	3 cut(s)	596, 759, 1082
CfoI	GCGC	1 cut(s)	956
Cfr10I	RCCGGY	1 cut(s)	815
Cfr13I	GGNCC	1 cut(s)	681
Csp6I	GTAC	3 cut(s)	643, 813, 1076
CspAI	ACCGGT	1 cut(s)	815
CviAII	CATG	7 cut(s)	84, 646, 808, 1097, 1117, 1352, 1392
CviQI	GTAC	3 cut(s)	643, 813, 1076
DpnI	GATC	7 cut(s)	258, 303, 404, 578, 1061, 1157, 1291
DpnII	GATC	7 cut(s)	256, 301, 402, 576, 1059, 1155, 1289
Eam1104I	CTCTTC	2 cut(s)	1031, 1336
EarI	CTCTTC	2 cut(s)	1031, 1336
Ecl136II	GAGCTC	1 cut(s)	718
Eco147I	AGGCCT	1 cut(s)	264
Eco24I	GRGCYC	2 cut(s)	720, 759
Eco31I	GGTCTC	1 cut(s)	1270
Eco32I	GATATC	1 cut(s)	996
Eco53kI	GAGCTC	1 cut(s)	718
Eco81I	CCTNAGG	1 cut(s)	1329
EcoICRI	GAGCTC	1 cut(s)	718
EcoNI	CCTNNNNNAGG	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	1013
EcoRII	CCWGG	4 cut(s)	398, 745, 786, 1041
EcoRV	GATATC	1 cut(s)	996
EcoT22I	ATGCAT	1 cut(s)	166
EcoT38I	GRGCYC	2 cut(s)	720, 759
FaeI	CATG	7 cut(s)	87, 649, 811, 1100, 1120, 1355, 1395
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	2 cut(s)	44, 872
FatI	CATG	7 cut(s)	83, 645, 807, 1096, 1116, 1351, 1391
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	1359
FokI	GGATG	5 cut(s)	17, 142, 241, 450, 1135
FriOI	GRGCYC	2 cut(s)	720, 759
Fsp4HI	GCNGC	1 cut(s)	1359
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	1 cut(s)	1359
GsuI	CTGGAG	2 cut(s)	809, 1025
HaeII	RGCGCY	1 cut(s)	957
HaeIII	GGCC	3 cut(s)	264, 348, 682
HapII	CCGG	1 cut(s)	816
HhaI	GCGC	1 cut(s)	956
Hin1II	CATG	7 cut(s)	87, 649, 811, 1100, 1120, 1355, 1395
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	3 cut(s)	44, 515, 794
HinfI	GANTC	3 cut(s)	827, 983, 1201
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	5 cut(s)	322, 581, 854, 1022, 1219
Hpy166II	GTNNAC	3 cut(s)	253, 655, 813
Hpy188I	TCNGA	9 cut(s)	160, 312, 512, 832, 852, 895, 1006, 1059, 1146
Hpy188III	TCNNGA	9 cut(s)	274, 365, 451, 544, 803, 991, 1063, 1091, 1338
Hpy8I	GTNNAC	3 cut(s)	253, 655, 813
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	6 cut(s)	275, 334, 560, 643, 1029, 1230
HpyCH4III	ACNGT	5 cut(s)	287, 678, 690, 707, 1010
HpyCH4IV	ACGT	4 cut(s)	91, 480, 926, 1364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 1077
HpySE526I	ACGT	4 cut(s)	91, 480, 926, 1364
Hsp92II	CATG	7 cut(s)	87, 649, 811, 1100, 1120, 1355, 1395
HspAI	GCGC	1 cut(s)	954
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	7 cut(s)	256, 301, 402, 576, 1059, 1155, 1289
LmnI	GCTCC	4 cut(s)	400, 715, 748, 885
Lsp1109I	GCAGC	1 cut(s)	1345
LweI	GCATC	7 cut(s)	151, 164, 428, 461, 619, 744, 882
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	4 cut(s)	91, 480, 926, 1364
MaeIII	GTNAC	5 cut(s)	423, 701, 728, 860, 1258
MalI	GATC	7 cut(s)	258, 303, 404, 578, 1061, 1157, 1291
MboI	GATC	7 cut(s)	256, 301, 402, 576, 1059, 1155, 1289
MboII	GAAGA	6 cut(s)	88, 366, 542, 1018, 1331, 1353
MflI	RGATCY	2 cut(s)	1155, 1289
MhlI	GDGCHC	2 cut(s)	720, 759
MluCI	AATT	5 cut(s)	8, 388, 634, 775, 1013
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	3 cut(s)	480, 1267, 1281
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	5 cut(s)	386, 914, 929, 935, 1377
MslI	CAYNNNNRTG	3 cut(s)	82, 1101, 1121
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	4 cut(s)	400, 747, 788, 1043
MvaI	CCWGG	4 cut(s)	400, 747, 788, 1043
MvnI	CGCG	1 cut(s)	1080
MwoI	GCNNNNNNNGC	2 cut(s)	161, 1077
NdeII	GATC	7 cut(s)	256, 301, 402, 576, 1059, 1155, 1289
NlaIII	CATG	7 cut(s)	87, 649, 811, 1100, 1120, 1355, 1395
NlaIV	GGNNCC	1 cut(s)	696
NmuCI	GTSAC	4 cut(s)	423, 701, 860, 1258
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	264
PciI	ACATGT	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	1 cut(s)	1370
PfeI	GAWTC	2 cut(s)	983, 1201
PflMI	CCANNNNNTGG	1 cut(s)	1286
PinAI	ACCGGT	1 cut(s)	815
PkrI	GCNGC	1 cut(s)	1360
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PscI	ACATGT	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	720
Psp1406I	AACGTT	2 cut(s)	91, 480
Psp6I	CCWGG	4 cut(s)	398, 745, 786, 1041
PspGI	CCWGG	4 cut(s)	398, 745, 786, 1041
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	1 cut(s)	681
PstI	CTGCAG	3 cut(s)	182, 554, 618
PsuI	RGATCY	2 cut(s)	1155, 1289
RsaI	GTAC	3 cut(s)	644, 814, 1077
RsaNI	GTAC	3 cut(s)	643, 813, 1076
RseI	CAYNNNNRTG	3 cut(s)	82, 1101, 1121
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	5 cut(s)	386, 914, 929, 935, 1377
SatI	GCNGC	1 cut(s)	1359
Sau3AI	GATC	7 cut(s)	256, 301, 402, 576, 1059, 1155, 1289
Sau96I	GGNCC	1 cut(s)	681
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	4 cut(s)	400, 747, 788, 1043
SduI	GDGCHC	2 cut(s)	720, 759
SfaNI	GCATC	7 cut(s)	151, 164, 428, 461, 619, 744, 882
SfcI	CTRYAG	4 cut(s)	178, 432, 550, 614
SmiMI	CAYNNNNRTG	3 cut(s)	82, 1101, 1121
SmlI	CTYRAG	2 cut(s)	518, 1151
SmoI	CTYRAG	2 cut(s)	518, 1151
Sse9I	AATT	5 cut(s)	8, 388, 634, 775, 1013
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	2 cut(s)	130, 141
SspMI	CTAG	1 cut(s)	858
SstI	GAGCTC	1 cut(s)	720
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	4 cut(s)	398, 745, 786, 1041
TaaI	ACNGT	5 cut(s)	287, 678, 690, 707, 1010
TaiI	ACGT	4 cut(s)	94, 483, 929, 1367
TaqI	TCGA	2 cut(s)	469, 981
TasI	AATT	5 cut(s)	8, 388, 634, 775, 1013
TfiI	GAWTC	2 cut(s)	983, 1201
Tru1I	TTAA	5 cut(s)	386, 914, 929, 935, 1377
Tru9I	TTAA	5 cut(s)	386, 914, 929, 935, 1377
TscAI	CASTG	3 cut(s)	304, 412, 974
TseFI	GTSAC	4 cut(s)	423, 701, 860, 1258
TseI	GCWGC	1 cut(s)	1358
Tsp45I	GTSAC	4 cut(s)	423, 701, 860, 1258
TspDTI	ATGAA	8 cut(s)	21, 38, 316, 449, 662, 788, 957, 1340
TspGWI	ACGGA	1 cut(s)	872
TspRI	CASTG	3 cut(s)	304, 412, 974
Van91I	CCANNNNNTGG	1 cut(s)	1286
XagI	CCTNNNNNAGG	1 cut(s)	750
XapI	RAATTY	2 cut(s)	388, 1013
XceI	RCATGY	1 cut(s)	811
XspI	CTAG	1 cut(s)	858
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.