pycom17g22380

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0008460
Physical Location & Seq
Forward (+)
20779328 .. 20780731
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g22380.1

Sequence Viewer

Length: 1404 bp
ATGGATTTTCTGCCGGACCAGTTATTATGGGAGATCTTGAGCAGGATTAAGAAAACCACTGACCGAAACTCTGTTTGTTTGGCATGTAAGCGCCTGCACGGATTGGATAATGAACAGAGACAATCTCTTCGGGTTGGTTGTGGATTAGACCCTGCAAATGAAGCTTTGACATCTCTCTGCAGTAGGTTTGTGAACTTGACAAGGGTTGAGATAACTTATGCCGGTTGGATGTCCAAACTAGGAAAGCAGTTGGATGACCAAGGGCTTCTTATTCTTTCCAACTACTGTCCTTCTCTGGTGGATCTCACATTAAGCTACTGCACATTCATCACGGATGTGGGTATCCGTCACTTGTCTTCTTGCTCAAAACTTTCAGCTTTGAAGTTGAATTTCAACGCAAGGATAACTGGATGTGGCATATTATCTGTTGTTGTGGGCTGCAAGAACCTCACTACCCTACATCTTATCCGATGCTTAAATATTAGCAGTTTTGAGTGGCTTGAATATCTTGGAAGGCTTGAAACTCTGGAAGATCTCTCCATTAAGAATTGCAGAGCTATTGGGGAGGGTGATTTGATTAAGCTAGGTTCCAGTTGGAAAAAATTAAAATGCTTGCAATTTGAGGTTGATGTTAATTACAGATATATGAAAGTTTATGATCGTTTAGCTGTGGATCGATGGCAAAAGCAGTGGGTCCCATGTGAGAATATGGTGGAACTTAGCTTGGTAAATTGCATCATCAGCCCGGGGCGGGGGCTTGCTTGTGTGCTGGGGAAGTGCAAGAATTTGGAGAAGATTCACTTGGACATGTGTGTTGGGGTAAGGGACTGTGACATCATAGGCTTAGCCCAAAAGTCAAAAAATCTTCGCTCCATTTTCCTTCGCGTTCCGTCAGATTTCTCACTTCCTCTTTTGATGAATAACCCATTGAGATTAACTGATGAATGTCTAAAAGCTTTGGCGCAAAACTGTTCTATGCTTGAATCTGTCAGGATATCCTACTCGGACGGGGAGTTCCCTTCTTTTTCCTCATTTACATTAGATGGAATCCTCAATTTGATTCAGAAGTGCCCTGTGCGGGAACTTGCTTTCGACCAAGTGTATTCCTTTAATGATGTTGGTATGGAAGCTCTTTGCTTGGCTCAGCATCTGGAGACCTTGGAGCTAATCAGATGCCAAGAGATAAGCGATGAGGGGCTTCAGCTCGTGGGCCAGTTTCCCCGGTTGTCCATTTTGCGTTTAATCAAGTGTTTAGGGGTTTCTGATGATGGGTTGAAGCCGCTTGCAGGGTCATACAAATTGGAATTGTTAGCTGTGGAAGATTGTCCTCTAATTTCTGAAAGAGGAGTTCTTGGAGCTGCGAAGTCCGTATCTTTCAGACAAGACTTGTCATGGATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
F-box LRR_6

Protein Analysis

468

Amino Acids

52.44

Weight (kDa)

6.9

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 375 - 450 2.1e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 885
AciI CCGC 3 cut(s) 751, 1078, 1280
AclWI GGATC 2 cut(s) 309, 681
AcsI RAATTY 2 cut(s) 388, 784
AcuI CTGAAG 1 cut(s) 1184
AfiI CCNNNNNNNGG 4 cut(s) 751, 752, 1078, 1286
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 7 cut(s) 382, 388, 394, 503, 521, 983, 1276
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AleI CACNNNNGTG 1 cut(s) 335
AloI GAACNNNNNNTCC 2 cut(s) 998, 1030
Alw26I GTCTC 2 cut(s) 112, 1148
AlwI GGATC 2 cut(s) 309, 681
AlwNI CAGNNNCTG 1 cut(s) 1150
Ama87I CYCGRG 1 cut(s) 745
AoxI GGCC 1 cut(s) 1210
ApeKI GCWGC 2 cut(s) 438, 1358
ApoI RAATTY 2 cut(s) 388, 784
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspLEI GCGC 2 cut(s) 93, 964
AspS9I GGNCC 3 cut(s) 16, 694, 1210
AsuC2I CCSGG 3 cut(s) 746, 747, 1222
AsuHPI GGTGA 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 745
AvaII GGWCC 2 cut(s) 16, 694
BaeGI GKGCMC 1 cut(s) 1073
BauI CACGAG 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 425, 1345
BccI CCATC 3 cut(s) 672, 1037, 1262
BciVI GTATCC 1 cut(s) 353
BcnI CCSGG 3 cut(s) 746, 747, 1222
BcoDI GTCTC 2 cut(s) 112, 1148
BfaI CTAG 2 cut(s) 239, 584
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 94
BfuI GTATCC 1 cut(s) 353
BglII AGATCT 2 cut(s) 33, 532
BisI GCNGC 3 cut(s) 439, 1280, 1359
BlpI GCTNAGC 2 cut(s) 844, 1143
BlsI GCNGC 3 cut(s) 440, 1281, 1360
Bme1390I CCNGG 3 cut(s) 746, 747, 1222
Bme18I GGWCC 2 cut(s) 16, 694
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 3 cut(s) 16, 694, 1210
BmiI GGNNCC 3 cut(s) 589, 695, 696
BmrFI CCNGG 3 cut(s) 746, 747, 1222
BmsI GCATC 4 cut(s) 461, 744, 1156, 1163
BpiI GAAGAC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 109, 141
BpmI CTGGAG 1 cut(s) 1172
Bpu1102I GCTNAGC 2 cut(s) 844, 1143
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 3 cut(s) 746, 747, 1222
Bsa29I ATCGAT 1 cut(s) 676
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 5 cut(s) 259, 745, 746, 1158, 1220
Bsc4I CCNNNNNNNGG 4 cut(s) 751, 752, 1078, 1286
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 4 cut(s) 19, 412, 591, 1213
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 5 cut(s) 259, 745, 746, 1158, 1220
BseGI GGATG 5 cut(s) 234, 259, 340, 416, 1401
BseLI CCNNNNNNNGG 4 cut(s) 751, 752, 1078, 1286
BseMII CTCAG 1 cut(s) 1157
BseNI ACTGG 4 cut(s) 19, 412, 591, 1213
BseRI GAGGAG 1 cut(s) 1359
BseSI GKGCMC 1 cut(s) 1073
BseXI GCAGC 2 cut(s) 425, 1345
BseYI CCCAGC 1 cut(s) 769
BsgI GTGCAG 2 cut(s) 80, 304
Bsh1236I CGCG 1 cut(s) 885
BshFI GGCC 1 cut(s) 1212
BshVI ATCGAT 1 cut(s) 676
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 4 cut(s) 14, 222, 746, 1222
BslFI GGGAC 2 cut(s) 680, 839
BslI CCNNNNNNNGG 4 cut(s) 751, 752, 1078, 1286
BsmAI GTCTC 2 cut(s) 112, 1148
BsmFI GGGAC 2 cut(s) 680, 839
BsnI GGCC 1 cut(s) 1212
Bso31I GGTCTC 1 cut(s) 1148
BsoBI CYCGRG 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 1073
Bsp143I GATC 5 cut(s) 33, 301, 532, 658, 673
Bsp1720I GCTNAGC 2 cut(s) 844, 1143
BspACI CCGC 3 cut(s) 751, 1078, 1280
BspANI GGCC 1 cut(s) 1212
BspCNI CTCAG 1 cut(s) 1156
BspDI ATCGAT 1 cut(s) 676
BspFNI CGCG 1 cut(s) 885
BspLI GGNNCC 3 cut(s) 589, 695, 696
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 2 cut(s) 309, 681
BspTNI GGTCTC 1 cut(s) 1148
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 4 cut(s) 19, 412, 591, 1213
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 5 cut(s) 259, 745, 746, 1158, 1220
BssMI GATC 5 cut(s) 33, 301, 532, 658, 673
BssSI CACGAG 1 cut(s) 1205
BssT1I CCWWGG 2 cut(s) 259, 1158
Bst2BI CACGAG 1 cut(s) 1205
Bst4CI ACNGT 3 cut(s) 287, 830, 971
Bst6I CTCTTC 1 cut(s) 132
BstC8I GCNNGC 4 cut(s) 95, 614, 759, 1284
BstDEI CTNAG 3 cut(s) 719, 844, 1143
BstF5I GGATG 5 cut(s) 234, 259, 340, 416, 1401
BstFNI CGCG 1 cut(s) 885
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 2 cut(s) 93, 964
BstKTI GATC 5 cut(s) 36, 304, 535, 661, 676
BstMAI GTCTC 2 cut(s) 112, 1148
BstMBI GATC 5 cut(s) 33, 301, 532, 658, 673
BstMWI GCNNNNNNNGC 2 cut(s) 161, 741
BstNSI RCATGY 2 cut(s) 87, 811
BstSCI CCNGG 3 cut(s) 744, 745, 1220
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 1073
BstUI CGCG 1 cut(s) 885
BstV1I GCAGC 2 cut(s) 425, 1345
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 3 cut(s) 33, 301, 532
BstYI RGATCY 3 cut(s) 33, 301, 532
Bsu15I ATCGAT 1 cut(s) 676
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 1 cut(s) 1212
BsuTUI ATCGAT 1 cut(s) 676
BtgZI GCGATG 1 cut(s) 1203
BtsCI GGATG 5 cut(s) 234, 259, 340, 416, 1401
BtsI GCAGTG 1 cut(s) 695
BtsIMutI CAGTG 2 cut(s) 57, 695
Cac8I GCNNGC 4 cut(s) 95, 614, 759, 1284
CaiI CAGNNNCTG 1 cut(s) 1150
CfoI GCGC 2 cut(s) 93, 964
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 3 cut(s) 16, 694, 1210
Cfr9I CCCGGG 1 cut(s) 745
ClaI ATCGAT 1 cut(s) 676
CspCI CAANNNNNGTGG 2 cut(s) 671, 706
CviAII CATG 4 cut(s) 84, 699, 808, 1392
DdeI CTNAG 3 cut(s) 719, 844, 1143
DpnI GATC 5 cut(s) 35, 303, 534, 660, 675
DpnII GATC 5 cut(s) 33, 301, 532, 658, 673
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 259, 1158
Eco31I GGTCTC 1 cut(s) 1148
Eco32I GATATC 1 cut(s) 996
Eco47I GGWCC 2 cut(s) 16, 694
Eco57I CTGAAG 1 cut(s) 1184
Eco88I CYCGRG 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 694
EcoRV GATATC 1 cut(s) 996
EcoT14I CCWWGG 2 cut(s) 259, 1158
ErhI CCWWGG 2 cut(s) 259, 1158
FaeI CATG 4 cut(s) 87, 702, 811, 1395
FalI AAGNNNNNCTT 4 cut(s) 252, 284, 785, 817
FaqI GGGAC 2 cut(s) 680, 839
FatI CATG 4 cut(s) 83, 698, 807, 1391
FauI CCCGC 2 cut(s) 744, 1071
Fnu4HI GCNGC 3 cut(s) 439, 1280, 1359
FokI GGATG 4 cut(s) 241, 266, 347, 423
Fsp4HI GCNGC 3 cut(s) 439, 1280, 1359
FspBI CTAG 2 cut(s) 239, 584
GlaI GCGC 2 cut(s) 92, 963
GluI GCNGC 3 cut(s) 439, 1280, 1359
GsaI CCCAGC 1 cut(s) 773
GsuI CTGGAG 1 cut(s) 1172
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 1212
HapII CCGG 4 cut(s) 14, 222, 746, 1222
HhaI GCGC 2 cut(s) 93, 964
Hin1II CATG 4 cut(s) 87, 702, 811, 1395
Hin6I GCGC 2 cut(s) 91, 962
HinP1I GCGC 2 cut(s) 91, 962
HindIII AAGCTT 2 cut(s) 162, 954
HinfI GANTC 4 cut(s) 796, 983, 1047, 1060
HpaII CCGG 4 cut(s) 14, 222, 746, 1222
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 8 cut(s) 470, 895, 1006, 1065, 1172, 1264, 1339, 1379
Hpy188III TCNNGA 4 cut(s) 37, 527, 991, 1151
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 4 cut(s) 300, 507, 890, 1029
HpyCH4III ACNGT 3 cut(s) 287, 830, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 741
HpyF3I CTNAG 3 cut(s) 719, 844, 1143
Hsp92II CATG 4 cut(s) 87, 702, 811, 1395
HspAI GCGC 2 cut(s) 91, 962
KflI GGGWCCC 1 cut(s) 694
Kzo9I GATC 5 cut(s) 33, 301, 532, 658, 673
LmnI GCTCC 3 cut(s) 875, 1162, 1355
Lsp1109I GCAGC 2 cut(s) 425, 1345
LweI GCATC 4 cut(s) 461, 744, 1156, 1163
MaeI CTAG 2 cut(s) 239, 584
MaeIII GTNAC 2 cut(s) 347, 830
MalI GATC 5 cut(s) 35, 303, 534, 660, 675
MboI GATC 5 cut(s) 33, 301, 532, 658, 673
MboII GAAGA 6 cut(s) 119, 348, 542, 805, 857, 1331
MflI RGATCY 3 cut(s) 33, 301, 532
MhlI GDGCHC 1 cut(s) 1073
MmeI TCCRAC 4 cut(s) 206, 231, 303, 575
MnlI CCTC 9 cut(s) 458, 559, 616, 918, 1039, 1061, 1186, 1337, 1338
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 4 cut(s) 14, 222, 746, 1222
MspR9I CCNGG 3 cut(s) 746, 747, 1222
MvnI CGCG 1 cut(s) 885
MwoI GCNNNNNNNGC 2 cut(s) 161, 741
NciI CCSGG 3 cut(s) 746, 747, 1222
NdeII GATC 5 cut(s) 33, 301, 532, 658, 673
NlaIII CATG 4 cut(s) 87, 702, 811, 1395
NlaIV GGNNCC 3 cut(s) 589, 695, 696
NmuCI GTSAC 2 cut(s) 347, 830
NspI RCATGY 2 cut(s) 87, 811
OliI CACNNNNGTG 1 cut(s) 335
PciI ACATGT 1 cut(s) 807
PfeI GAWTC 4 cut(s) 796, 983, 1047, 1060
PkrI GCNGC 3 cut(s) 440, 1281, 1360
PpuMI RGGWCCY 1 cut(s) 694
PscI ACATGT 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 769
PspN4I GGNNCC 3 cut(s) 589, 695, 696
PspPI GGNCC 3 cut(s) 16, 694, 1210
PspPPI RGGWCCY 1 cut(s) 694
PstI CTGCAG 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 1150
PsuI RGATCY 3 cut(s) 33, 301, 532
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 3 cut(s) 439, 1280, 1359
Sau3AI GATC 5 cut(s) 33, 301, 532, 658, 673
Sau96I GGNCC 3 cut(s) 16, 694, 1210
ScrFI CCNGG 3 cut(s) 746, 747, 1222
SduI GDGCHC 1 cut(s) 1073
SfaNI GCATC 4 cut(s) 461, 744, 1156, 1163
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 2 cut(s) 16, 694
SmaI CCCGGG 1 cut(s) 747
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SsiI CCGC 3 cut(s) 751, 1078, 1280
SspI AATATT 1 cut(s) 481
SspMI CTAG 2 cut(s) 239, 584
StyD4I CCNGG 3 cut(s) 744, 745, 1220
StyI CCWWGG 2 cut(s) 259, 1158
TaaI ACNGT 3 cut(s) 287, 830, 971
TaqI TCGA 2 cut(s) 676, 1092
TaqII GACCGA 1 cut(s) 78
TauI GCSGC 1 cut(s) 1282
TfiI GAWTC 4 cut(s) 796, 983, 1047, 1060
TscAI CASTG 2 cut(s) 64, 695
TseFI GTSAC 2 cut(s) 347, 830
TseI GCWGC 2 cut(s) 438, 1358
Tsp45I GTSAC 2 cut(s) 347, 830
TspDTI ATGAA 6 cut(s) 126, 174, 316, 662, 932, 957
TspGWI ACGGA 5 cut(s) 114, 335, 347, 879, 1357
TspMI CCCGGG 1 cut(s) 745
TspRI CASTG 2 cut(s) 64, 695
VpaK11BI GGWCC 2 cut(s) 16, 694
XapI RAATTY 2 cut(s) 388, 784
XceI RCATGY 2 cut(s) 87, 811
XmaI CCCGGG 1 cut(s) 745
XspI CTAG 2 cut(s) 239, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.