Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008460

Physical Location & Seq

Genomic Coordinates Forward (+)

26628838 .. 26631694

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1219000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGATTTTCTGCCGGACCAGTTATTATGGGAGATCTTGAGCAGGATTAAGAAAACCACTGACCGAAACTCTGTTTCTTTGGCATGTAAGCGCCTGCACGGATTGGATAATGAACAGAGACAATCTCTTCGGGTTGGTTGTGGATTAGACCCTGCAAATGAAGCTTTGACATCTCTCTGCAGTAGGTTTGCTAACTTGACAAGGGTCGAGATAACTTATGCCGGTTGGATGTCCAAACTAGGAAAGCAGTTGGATGACCAAGGGCTTCTTATTCTTTCCAACTACTGTCCTTCTCTGGTGGATCTCACATTAAGCTACTGCACATTCATCACGGATGTGGGTATCCGTCACTTGTCTTCTTGCTCAAAACTTTCAGCTTTGAAGTTGAATTTCAACGCAAGGATAACTGGATGTGGCATATTATCTGTTGTTGTGGGCTGCAAGAACCTCACTACCCTCCATCTTATCCGATGCTTAAATATTAGCAGTTTTGAGTGGCTTGAATATCTTGGAAAGCTTGAAACTCTCGAAGATCTCTCAATTAAGAATTGCAGAGCTATTGGGGAGGGTGATTTGATTAAGCTAGGTTCCAGTTGGAAAAAATTAAAATGCTTGCAATTTGAGGTTGATGTTAATTACAGATATATGAAAGTTTATGATCGTTTAGCTGTGGATCGATGGCAAAAGCAGTGGGTCCCATGTGATAATATGGTGGAACTTAGCTTGGTAAATTGCATCATCAGCCCGGGGCGGGGGCTTGCTTGTGTACTGGGGAAGTGCAAGAATTTGGAGAAGATTCACTTGGACATGTGTGTTGGGGTAAGGGACTGTGACATCATAGGCTTAGCCCAAAAGTCAAAAAATCTTCGGTCCATTTTCCTTCGCGTTCCGTCAGATTTCTCACTTCCTCTTTTGATGAATAACCCATTGAGATTAACTGATGAATGTCTAAAAGCCGTGGCGCAGAACTGTTCGATGCTTGAATCTGTCAGGATATCTTACTCCGACGGGGAGTTCCCTTCTTTTTCCTCATTTACATTAGATGGAATCCTCAATTTGATTCAGAAGTGCCCTGTGCGGGAACTTGCTTTTGACCAAGTGTATTCCTTTAATGATGTTGGTATGGAAGCTCTTTGCTTGGCTCTGCATCTGGAGACCTTGGAGCTAATCAGATGCCAAGAGATAAGCGATGAGGGGCTGCAGCTCGTGGGCCAGTTTCCCCGGTTGTCCATTTTGCGTTTAATCAAGTGTTTAGGGGTTTCTGATGATGGGTTGAAGCCGCTTGCAGGGTCATACAAATTGGAATTGTTAGCTGTGGAAGATTGTCCTCAAATTTCTGAAAGAGGAGTTCTTGGAGCTGCGAAGTCCGTATCTTTCAGACAAGACTTGTCATGGATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

468

Amino Acids

52.35

Weight (kDa)

6.9

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	3 - 41	2.5e-06	F-box
DUF7885	PF25372	359 - 450	2.4e-06	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80570 AT1G80570 AT1G80570
fragaria_vesca	FvH4_6g29021 FvH4_6g29021
malus_domestica	MD17G1219000.v1.1
prunus_persica	Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1
pyrus_communis	pycom17g22380
rosa_chinensis	RchiOBHm_Chr2g0133701
rosa_laevigata	RLG00000019357
rosa_multiflora	Rmu_sc0000924.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110890
rosa_rugosa	Rorug02G0313100
rosa_samantha	Rh2AG366500 Rh2BG372100 Rh2CG349600 Rh2DG389000
rosa_wichuraiana	Rw2G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	885
AciI	CCGC	3 cut(s)	751, 1078, 1280
AclWI	GGATC	2 cut(s)	309, 681
AcsI	RAATTY	3 cut(s)	388, 784, 1332
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	4 cut(s)	751, 752, 1078, 1286
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	7 cut(s)	382, 388, 394, 503, 521, 983, 1276
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AleI	CACNNNNGTG	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	112, 1148
AlwI	GGATC	2 cut(s)	309, 681
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	1 cut(s)	1210
ApeKI	GCWGC	4 cut(s)	438, 1198, 1201, 1358
ApoI	RAATTY	3 cut(s)	388, 784, 1332
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	2 cut(s)	93, 964
AspS9I	GGNCC	4 cut(s)	16, 694, 870, 1210
AsuC2I	CCSGG	3 cut(s)	746, 747, 1222
AsuHPI	GGTGA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	3 cut(s)	16, 694, 870
BaeGI	GKGCMC	1 cut(s)	1073
BauI	CACGAG	1 cut(s)	1205
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	425, 1185, 1213, 1345
BccI	CCATC	4 cut(s)	468, 672, 1037, 1262
BceAI	ACGGC	1 cut(s)	941
BciVI	GTATCC	1 cut(s)	353
BcnI	CCSGG	3 cut(s)	746, 747, 1222
BcoDI	GTCTC	2 cut(s)	112, 1148
BfaI	CTAG	2 cut(s)	239, 584
BfmI	CTRYAG	2 cut(s)	178, 1199
BfoI	RGCGCY	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	353
BglII	AGATCT	2 cut(s)	33, 532
BisI	GCNGC	5 cut(s)	439, 1199, 1202, 1280, 1359
BlpI	GCTNAGC	1 cut(s)	844
BlsI	GCNGC	5 cut(s)	440, 1200, 1203, 1281, 1360
Bme1390I	CCNGG	3 cut(s)	746, 747, 1222
Bme18I	GGWCC	3 cut(s)	16, 694, 870
BmeT110I	CYCGRG	1 cut(s)	745
BmgT120I	GGNCC	4 cut(s)	16, 694, 870, 1210
BmiI	GGNNCC	3 cut(s)	589, 695, 696
BmrFI	CCNGG	3 cut(s)	746, 747, 1222
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	5 cut(s)	461, 744, 966, 1156, 1163
BmuI	ACTGGG	1 cut(s)	779
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	1172
Bpu1102I	GCTNAGC	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	3 cut(s)	746, 747, 1222
Bsa29I	ATCGAT	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	1148
BsaJI	CCNNGG	6 cut(s)	259, 745, 746, 957, 1158, 1220
Bsc4I	CCNNNNNNNGG	4 cut(s)	751, 752, 1078, 1286
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	5 cut(s)	19, 412, 591, 774, 1213
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	6 cut(s)	259, 745, 746, 957, 1158, 1220
BseGI	GGATG	5 cut(s)	234, 259, 340, 416, 1401
BseLI	CCNNNNNNNGG	4 cut(s)	751, 752, 1078, 1286
BseNI	ACTGG	5 cut(s)	19, 412, 591, 774, 1213
BseRI	GAGGAG	1 cut(s)	1359
BseSI	GKGCMC	1 cut(s)	1073
BseXI	GCAGC	4 cut(s)	425, 1185, 1213, 1345
BsgI	GTGCAG	2 cut(s)	80, 304
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	1 cut(s)	1212
BshVI	ATCGAT	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	4 cut(s)	14, 222, 746, 1222
BslFI	GGGAC	2 cut(s)	680, 839
BslI	CCNNNNNNNGG	4 cut(s)	751, 752, 1078, 1286
BsmAI	GTCTC	2 cut(s)	112, 1148
BsmFI	GGGAC	2 cut(s)	680, 839
BsnI	GGCC	1 cut(s)	1212
Bso31I	GGTCTC	1 cut(s)	1148
BsoBI	CYCGRG	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	1073
Bsp143I	GATC	5 cut(s)	33, 301, 532, 658, 673
Bsp1720I	GCTNAGC	1 cut(s)	844
BspACI	CCGC	3 cut(s)	751, 1078, 1280
BspANI	GGCC	1 cut(s)	1212
BspDI	ATCGAT	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	885
BspLI	GGNNCC	3 cut(s)	589, 695, 696
BspMAI	CTGCAG	2 cut(s)	182, 1203
BspPI	GGATC	2 cut(s)	309, 681
BspTNI	GGTCTC	1 cut(s)	1148
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	5 cut(s)	19, 412, 591, 774, 1213
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	6 cut(s)	259, 745, 746, 957, 1158, 1220
BssMI	GATC	5 cut(s)	33, 301, 532, 658, 673
BssSI	CACGAG	1 cut(s)	1205
BssT1I	CCWWGG	2 cut(s)	259, 1158
Bst2BI	CACGAG	1 cut(s)	1205
Bst4CI	ACNGT	3 cut(s)	287, 830, 971
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	4 cut(s)	95, 614, 759, 1284
BstDEI	CTNAG	2 cut(s)	719, 844
BstDSI	CCRYGG	1 cut(s)	957
BstF5I	GGATG	5 cut(s)	234, 259, 340, 416, 1401
BstFNI	CGCG	1 cut(s)	885
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	93, 964
BstKTI	GATC	5 cut(s)	36, 304, 535, 661, 676
BstMAI	GTCTC	2 cut(s)	112, 1148
BstMBI	GATC	5 cut(s)	33, 301, 532, 658, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 741
BstNSI	RCATGY	2 cut(s)	87, 811
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	744, 745, 1220
BstSFI	CTRYAG	2 cut(s)	178, 1199
BstSLI	GKGCMC	1 cut(s)	1073
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	4 cut(s)	425, 1185, 1213, 1345
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	3 cut(s)	33, 301, 532
BstYI	RGATCY	3 cut(s)	33, 301, 532
Bsu15I	ATCGAT	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	1212
BsuTUI	ATCGAT	1 cut(s)	676
BtgI	CCRYGG	1 cut(s)	957
BtgZI	GCGATG	1 cut(s)	1203
BtsCI	GGATG	5 cut(s)	234, 259, 340, 416, 1401
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	2 cut(s)	57, 695
Cac8I	GCNNGC	4 cut(s)	95, 614, 759, 1284
CfoI	GCGC	2 cut(s)	93, 964
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	4 cut(s)	16, 694, 870, 1210
Cfr9I	CCCGGG	1 cut(s)	745
ClaI	ATCGAT	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	767
CspCI	CAANNNNNGTGG	2 cut(s)	671, 706
CviAII	CATG	4 cut(s)	84, 699, 808, 1392
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	2 cut(s)	719, 844
DpnI	GATC	5 cut(s)	35, 303, 534, 660, 675
DpnII	GATC	5 cut(s)	33, 301, 532, 658, 673
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	259, 1158
Eco31I	GGTCTC	1 cut(s)	1148
Eco32I	GATATC	1 cut(s)	996
Eco47I	GGWCC	3 cut(s)	16, 694, 870
Eco88I	CYCGRG	1 cut(s)	745
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRV	GATATC	1 cut(s)	996
EcoT14I	CCWWGG	2 cut(s)	259, 1158
ErhI	CCWWGG	2 cut(s)	259, 1158
FaeI	CATG	4 cut(s)	87, 702, 811, 1395
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 785, 817
FaqI	GGGAC	2 cut(s)	680, 839
FatI	CATG	4 cut(s)	83, 698, 807, 1391
FauI	CCCGC	2 cut(s)	744, 1071
Fnu4HI	GCNGC	5 cut(s)	439, 1199, 1202, 1280, 1359
FokI	GGATG	4 cut(s)	241, 266, 347, 423
Fsp4HI	GCNGC	5 cut(s)	439, 1199, 1202, 1280, 1359
FspBI	CTAG	2 cut(s)	239, 584
GlaI	GCGC	2 cut(s)	92, 963
GluI	GCNGC	5 cut(s)	439, 1199, 1202, 1280, 1359
GsuI	CTGGAG	1 cut(s)	1172
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	1212
HapII	CCGG	4 cut(s)	14, 222, 746, 1222
HhaI	GCGC	2 cut(s)	93, 964
Hin1II	CATG	4 cut(s)	87, 702, 811, 1395
Hin6I	GCGC	2 cut(s)	91, 962
HinP1I	GCGC	2 cut(s)	91, 962
HindIII	AAGCTT	2 cut(s)	162, 515
HinfI	GANTC	4 cut(s)	796, 983, 1047, 1060
HpaII	CCGG	4 cut(s)	14, 222, 746, 1222
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	1 cut(s)	767
Hpy188I	TCNGA	8 cut(s)	470, 895, 1006, 1065, 1172, 1264, 1339, 1379
Hpy188III	TCNNGA	5 cut(s)	37, 208, 527, 991, 1151
Hpy8I	GTNNAC	1 cut(s)	767
Hpy99I	CGWCG	1 cut(s)	1010
HpyAV	CCTTC	3 cut(s)	300, 890, 1029
HpyCH4III	ACNGT	3 cut(s)	287, 830, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 741
HpyF3I	CTNAG	2 cut(s)	719, 844
Hsp92II	CATG	4 cut(s)	87, 702, 811, 1395
HspAI	GCGC	2 cut(s)	91, 962
KflI	GGGWCCC	1 cut(s)	694
Kzo9I	GATC	5 cut(s)	33, 301, 532, 658, 673
LmnI	GCTCC	2 cut(s)	1162, 1355
Lsp1109I	GCAGC	4 cut(s)	425, 1185, 1213, 1345
LweI	GCATC	5 cut(s)	461, 744, 966, 1156, 1163
MaeI	CTAG	2 cut(s)	239, 584
MaeIII	GTNAC	2 cut(s)	347, 830
MalI	GATC	5 cut(s)	35, 303, 534, 660, 675
MboI	GATC	5 cut(s)	33, 301, 532, 658, 673
MboII	GAAGA	6 cut(s)	119, 348, 542, 805, 857, 1331
MflI	RGATCY	3 cut(s)	33, 301, 532
MhlI	GDGCHC	1 cut(s)	1073
MmeI	TCCRAC	5 cut(s)	206, 231, 303, 575, 1029
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	4 cut(s)	14, 222, 746, 1222
MspR9I	CCNGG	3 cut(s)	746, 747, 1222
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	2 cut(s)	161, 741
NciI	CCSGG	3 cut(s)	746, 747, 1222
NdeII	GATC	5 cut(s)	33, 301, 532, 658, 673
NlaIII	CATG	4 cut(s)	87, 702, 811, 1395
NlaIV	GGNNCC	3 cut(s)	589, 695, 696
NmuCI	GTSAC	2 cut(s)	347, 830
NspI	RCATGY	2 cut(s)	87, 811
OliI	CACNNNNGTG	1 cut(s)	335
PciI	ACATGT	1 cut(s)	807
PfeI	GAWTC	4 cut(s)	796, 983, 1047, 1060
PkrI	GCNGC	5 cut(s)	440, 1200, 1203, 1281, 1360
PpuMI	RGGWCCY	1 cut(s)	694
PscI	ACATGT	1 cut(s)	807
PshAI	GACNNNNGTC	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	694
PspN4I	GGNNCC	3 cut(s)	589, 695, 696
PspPI	GGNCC	4 cut(s)	16, 694, 870, 1210
PspPPI	RGGWCCY	1 cut(s)	694
PstI	CTGCAG	2 cut(s)	182, 1203
PsuI	RGATCY	3 cut(s)	33, 301, 532
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
RseI	CAYNNNNRTG	1 cut(s)	335
SatI	GCNGC	5 cut(s)	439, 1199, 1202, 1280, 1359
Sau3AI	GATC	5 cut(s)	33, 301, 532, 658, 673
Sau96I	GGNCC	4 cut(s)	16, 694, 870, 1210
ScrFI	CCNGG	3 cut(s)	746, 747, 1222
SduI	GDGCHC	1 cut(s)	1073
SfaNI	GCATC	5 cut(s)	461, 744, 966, 1156, 1163
SfcI	CTRYAG	2 cut(s)	178, 1199
SinI	GGWCC	3 cut(s)	16, 694, 870
SmaI	CCCGGG	1 cut(s)	747
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
SsiI	CCGC	3 cut(s)	751, 1078, 1280
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	239, 584
StyD4I	CCNGG	3 cut(s)	744, 745, 1220
StyI	CCWWGG	2 cut(s)	259, 1158
TaaI	ACNGT	3 cut(s)	287, 830, 971
TaqI	TCGA	4 cut(s)	207, 528, 676, 974
TaqII	GACCGA	2 cut(s)	78, 858
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	1 cut(s)	1282
TfiI	GAWTC	4 cut(s)	796, 983, 1047, 1060
TscAI	CASTG	2 cut(s)	64, 695
TseFI	GTSAC	2 cut(s)	347, 830
TseI	GCWGC	4 cut(s)	438, 1198, 1201, 1358
Tsp45I	GTSAC	2 cut(s)	347, 830
TspDTI	ATGAA	6 cut(s)	126, 174, 316, 662, 932, 957
TspGWI	ACGGA	5 cut(s)	114, 335, 347, 879, 1357
TspMI	CCCGGG	1 cut(s)	745
TspRI	CASTG	2 cut(s)	64, 695
VpaK11BI	GGWCC	3 cut(s)	16, 694, 870
XapI	RAATTY	3 cut(s)	388, 784, 1332
XceI	RCATGY	2 cut(s)	87, 811
XmaI	CCCGGG	1 cut(s)	745
XspI	CTAG	2 cut(s)	239, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.