Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000924.1

Orthogroup ID

OG0008460

Physical Location & Seq

Genomic Coordinates Forward (+)

24696 .. 26099

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000924.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

atggattatttacccgagcagttagtttgggagatcttgagcaggattaagaaaaccactgatagaaactccgtgtctttgacatgtaaacgcctgaatggattggataatgaacagaggcaagcccttcgggttggttgtggattagaccctgctaatgaagctttgacttctctctgcagtaggtttctcaacttgacaaaggtagagataacttacgccggttggatgtccaaactaggaaagcagttggatgaccatgggcttcttgttctttccaattactgcccttctttggttgatctctcactaagctactgcacattcatcactgatgtgggccttggttatttgtcttcttgctcaaagctttcagctttgaagttgaatttcaccccaagaataactggctgtggcatattatctcttgttgtgggctgcaaaaatctcactgttctccatctcatccgatgtttaaatgttagcagcgtcgagtggcttgaatatcttggcaggcttgagacacttgaagatctctcaatcaagaattgtagagctattggggagggcgatatgattaagctaggtgctagttggagaaaactgaaacgcttgcaatttgaggtggatgctaattacagatacatgaaagtctatgatcgtttagctgtggatcgatggcaaaagcagtgggttccttgtgagagtatgttggaacttagcttgataaattgcatcatcagcccaggaaggggacttgcttgtgtgatggggaagtgcaagaaattggagaagattcacttggacatgtgtgttggggtacgggactgtgacataataggcttagcccaaaattcaagtaatcttcgctccatttacctccgagtcccgtcagatttctcacttcctcttctgatgaataaccctttgagactaaccgatgaatgcctaaatgccttgtccagtaactgttcaatgcttgaatctgtcaggatatcttactctgatggggaattcccttccttttcctcatttacattacagggaatcattactttgattcagaagtgccctgtgcgggaacttgcttttgaccaagtgtattccttcaacgacactgggatggaagctctttgctttgctcagcatcttgaaacattggagcttgtcaggtgccaagagataagtgatgaagggctgcaacttgcggtccagtttccgcgattgtctgttctgcgtttaatcaagtgtttgggagtttctgatgaaggtttaaggccactagtaggttcattcaaactggaaacgttggctgtggaagattgtccccaagtctctgaaagaggagtatttggagctgcaagatctgtttctttcagacaagacctgtcatggatgtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

467

Amino Acids

52.44

Weight (kDa)

6.48

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80570 AT1G80570 AT1G80570
fragaria_vesca	FvH4_6g29021 FvH4_6g29021
malus_domestica	MD17G1219000.v1.1
prunus_persica	Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1
pyrus_communis	pycom17g22380
rosa_chinensis	RchiOBHm_Chr2g0133701
rosa_laevigata	RLG00000019357
rosa_multiflora	Rmu_sc0000924.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110890
rosa_rugosa	Rorug02G0313100
rosa_samantha	Rh2AG366500 Rh2BG372100 Rh2CG349600 Rh2DG389000
rosa_wichuraiana	Rw2G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1173
AccII	CGCG	1 cut(s)	1222
AciI	CCGC	3 cut(s)	1078, 1208, 1220
AclI	AACGTT	1 cut(s)	1307
AclWI	GGATC	1 cut(s)	681
AcsI	RAATTY	3 cut(s)	388, 853, 1013
AfaI	GTAC	2 cut(s)	822, 1400
AfiI	CCNNNNNNNGG	5 cut(s)	295, 751, 752, 1078, 1286
AflIII	ACRYGT	2 cut(s)	83, 807
AhlI	ACTAGT	1 cut(s)	1282
AjnI	CCWGG	1 cut(s)	745
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AleI	CACNNNNGTG	1 cut(s)	335
Alw26I	GTCTC	3 cut(s)	515, 925, 1339
AlwI	GGATC	1 cut(s)	681
AlwNI	CAGNNNCTG	1 cut(s)	969
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	340, 1277
ApeKI	GCWGC	4 cut(s)	438, 486, 1198, 1358
ApoI	RAATTY	3 cut(s)	388, 853, 1013
AspS9I	GGNCC	2 cut(s)	340, 1210
AsuHPI	GGTGA	1 cut(s)	385
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	1210
BaeGI	GKGCMC	1 cut(s)	1073
BanI	GGYRCC	1 cut(s)	1173
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	425, 498, 1185, 1345
BccI	CCATC	5 cut(s)	468, 672, 763, 1001, 1117
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	515, 925, 1339
BcuI	ACTAGT	1 cut(s)	1282
BfaI	CTAG	4 cut(s)	239, 584, 591, 1283
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	3 cut(s)	33, 532, 1364
BisI	GCNGC	4 cut(s)	439, 487, 1199, 1359
BlpI	GCTNAGC	2 cut(s)	844, 1143
BlsI	GCNGC	4 cut(s)	440, 488, 1200, 1360
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	1210
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	340, 1210
BmiI	GGNNCC	2 cut(s)	696, 1175
BmrFI	CCNGG	1 cut(s)	747
BmrI	ACTGGG	1 cut(s)	1128
BmsI	GCATC	3 cut(s)	619, 744, 1156
BmuI	ACTGGG	1 cut(s)	1128
BpiI	GAAGAC	1 cut(s)	348
Bpu1102I	GCTNAGC	2 cut(s)	844, 1143
BpuEI	CTTGAG	2 cut(s)	58, 539
Bsa29I	ATCGAT	1 cut(s)	676
BsaJI	CCNNGG	3 cut(s)	259, 343, 745
Bsc4I	CCNNNNNNNGG	5 cut(s)	295, 751, 752, 1078, 1286
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	5 cut(s)	412, 963, 1123, 1213, 1305
BseBI	CCWGG	1 cut(s)	747
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	3 cut(s)	259, 343, 745
BseGI	GGATG	6 cut(s)	234, 259, 465, 634, 1128, 1401
BseLI	CCNNNNNNNGG	5 cut(s)	295, 751, 752, 1078, 1286
BseMII	CTCAG	1 cut(s)	1157
BseNI	ACTGG	5 cut(s)	412, 963, 1123, 1213, 1305
BseRI	GAGGAG	1 cut(s)	1359
BseSI	GKGCMC	1 cut(s)	1073
BseXI	GCAGC	4 cut(s)	425, 498, 1185, 1345
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	1222
BshFI	GGCC	2 cut(s)	342, 1279
BshNI	GGYRCC	1 cut(s)	1173
BshVI	ATCGAT	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	4 cut(s)	768, 839, 872, 1311
BslI	CCNNNNNNNGG	5 cut(s)	295, 751, 752, 1078, 1286
BsmAI	GTCTC	3 cut(s)	515, 925, 1339
BsmFI	GGGAC	4 cut(s)	768, 839, 872, 1311
BsmI	GAATGC	1 cut(s)	950
BsnI	GGCC	2 cut(s)	342, 1279
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	1073
Bsp143I	GATC	6 cut(s)	33, 301, 532, 658, 673, 1364
Bsp1720I	GCTNAGC	2 cut(s)	844, 1143
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	3 cut(s)	1078, 1208, 1220
BspANI	GGCC	2 cut(s)	342, 1279
BspCNI	CTCAG	1 cut(s)	1156
BspDI	ATCGAT	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	1222
BspLI	GGNNCC	2 cut(s)	696, 1175
BspMAI	CTGCAG	1 cut(s)	182
BspPI	GGATC	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	1173
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	5 cut(s)	412, 963, 1123, 1213, 1305
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	259, 343, 745
BssMI	GATC	6 cut(s)	33, 301, 532, 658, 673, 1364
BssT1I	CCWWGG	2 cut(s)	259, 343
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	454, 830, 971
Bst6I	CTCTTC	1 cut(s)	915
BstC8I	GCNNGC	3 cut(s)	123, 515, 614
BstDEI	CTNAG	4 cut(s)	311, 719, 844, 1143
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	6 cut(s)	234, 259, 465, 634, 1128, 1401
BstFNI	CGCG	1 cut(s)	1222
BstKTI	GATC	6 cut(s)	36, 304, 535, 661, 676, 1367
BstMAI	GTCTC	3 cut(s)	515, 925, 1339
BstMBI	GATC	6 cut(s)	33, 301, 532, 658, 673, 1364
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 741
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	2 cut(s)	87, 811
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	1073
BstUI	CGCG	1 cut(s)	1222
BstV1I	GCAGC	4 cut(s)	425, 498, 1185, 1345
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	3 cut(s)	33, 532, 1364
BstYI	RGATCY	3 cut(s)	33, 532, 1364
Bsu15I	ATCGAT	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	342, 1279
BsuTUI	ATCGAT	1 cut(s)	676
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	6 cut(s)	234, 259, 465, 634, 1128, 1401
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	5 cut(s)	57, 330, 450, 695, 1116
Cac8I	GCNNGC	3 cut(s)	123, 515, 614
CaiI	CAGNNNCTG	1 cut(s)	969
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	340, 1210
ClaI	ATCGAT	1 cut(s)	676
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	821, 1399
CspCI	CAANNNNNGTGG	2 cut(s)	671, 706
CviAII	CATG	5 cut(s)	84, 260, 646, 808, 1392
CviQI	GTAC	2 cut(s)	821, 1399
DdeI	CTNAG	4 cut(s)	311, 719, 844, 1143
DpnI	GATC	6 cut(s)	35, 303, 534, 660, 675, 1366
DpnII	GATC	6 cut(s)	33, 301, 532, 658, 673, 1364
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
Eco130I	CCWWGG	2 cut(s)	259, 343
Eco32I	GATATC	1 cut(s)	996
Eco47I	GGWCC	1 cut(s)	1210
Eco88I	CYCGRG	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	1013
EcoRII	CCWGG	1 cut(s)	745
EcoRV	GATATC	1 cut(s)	996
EcoT14I	CCWWGG	2 cut(s)	259, 343
ErhI	CCWWGG	2 cut(s)	259, 343
FaeI	CATG	5 cut(s)	87, 263, 649, 811, 1395
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FaqI	GGGAC	4 cut(s)	768, 839, 872, 1311
FatI	CATG	5 cut(s)	83, 259, 645, 807, 1391
FauI	CCCGC	1 cut(s)	1071
Fnu4HI	GCNGC	4 cut(s)	439, 487, 1199, 1359
FokI	GGATG	5 cut(s)	241, 266, 452, 641, 1135
Fsp4HI	GCNGC	4 cut(s)	439, 487, 1199, 1359
FspBI	CTAG	4 cut(s)	239, 584, 591, 1283
GluI	GCNGC	4 cut(s)	439, 487, 1199, 1359
HaeIII	GGCC	2 cut(s)	342, 1279
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	478
Hin1II	CATG	5 cut(s)	87, 263, 649, 811, 1395
HindIII	AAGCTT	2 cut(s)	162, 368
HinfI	GANTC	5 cut(s)	796, 885, 983, 1047, 1060
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	9 cut(s)	470, 884, 895, 915, 1006, 1065, 1264, 1339, 1379
Hpy188III	TCNNGA	4 cut(s)	37, 544, 991, 1151
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	7 cut(s)	137, 300, 744, 1029, 1117, 1187, 1262
HpyCH4III	ACNGT	3 cut(s)	454, 830, 971
HpyCH4IV	ACGT	1 cut(s)	1307
HpyCH4V	TGCA	8 cut(s)	180, 321, 441, 616, 735, 780, 1201, 1361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 741
HpyF3I	CTNAG	4 cut(s)	311, 719, 844, 1143
HpySE526I	ACGT	1 cut(s)	1307
Hsp92II	CATG	5 cut(s)	87, 263, 649, 811, 1395
Kzo9I	GATC	6 cut(s)	33, 301, 532, 658, 673, 1364
LmnI	GCTCC	3 cut(s)	875, 1162, 1355
Lsp1109I	GCAGC	4 cut(s)	425, 498, 1185, 1345
LweI	GCATC	3 cut(s)	619, 744, 1156
MaeI	CTAG	4 cut(s)	239, 584, 591, 1283
MaeII	ACGT	1 cut(s)	1307
MaeIII	GTNAC	2 cut(s)	830, 965
MalI	GATC	6 cut(s)	35, 303, 534, 660, 675, 1366
MboI	GATC	6 cut(s)	33, 301, 532, 658, 673, 1364
MboII	GAAGA	6 cut(s)	348, 542, 805, 857, 902, 1331
MflI	RGATCY	3 cut(s)	33, 532, 1364
MhlI	GDGCHC	1 cut(s)	1073
MluCI	AATT	9 cut(s)	280, 388, 547, 617, 634, 730, 785, 853, 1013
MlyI	GAGTC	1 cut(s)	894
MmeI	TCCRAC	4 cut(s)	206, 231, 575, 693
MnlI	CCTC	7 cut(s)	111, 559, 616, 890, 918, 1039, 1337
MseI	TTAA	5 cut(s)	48, 476, 579, 1241, 1274
MslI	CAYNNNNRTG	2 cut(s)	335, 1121
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	950
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	1 cut(s)	1222
MwoI	GCNNNNNNNGC	2 cut(s)	161, 741
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	6 cut(s)	33, 301, 532, 658, 673, 1364
NlaIII	CATG	5 cut(s)	87, 263, 649, 811, 1395
NlaIV	GGNNCC	2 cut(s)	696, 1175
NmuCI	GTSAC	1 cut(s)	830
NspI	RCATGY	2 cut(s)	87, 811
OliI	CACNNNNGTG	1 cut(s)	335
PciI	ACATGT	2 cut(s)	83, 807
PctI	GAATGC	1 cut(s)	950
PfeI	GAWTC	4 cut(s)	796, 983, 1047, 1060
PkrI	GCNGC	4 cut(s)	440, 488, 1200, 1360
PleI	GAGTC	1 cut(s)	893
PpsI	GAGTC	1 cut(s)	893
PscI	ACATGT	2 cut(s)	83, 807
Psp1406I	AACGTT	1 cut(s)	1307
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	696, 1175
PspPI	GGNCC	2 cut(s)	340, 1210
PstI	CTGCAG	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	969
PsuI	RGATCY	3 cut(s)	33, 532, 1364
RsaI	GTAC	2 cut(s)	822, 1400
RsaNI	GTAC	2 cut(s)	821, 1399
RseI	CAYNNNNRTG	2 cut(s)	335, 1121
SaqAI	TTAA	5 cut(s)	48, 476, 579, 1241, 1274
SatI	GCNGC	4 cut(s)	439, 487, 1199, 1359
Sau3AI	GATC	6 cut(s)	33, 301, 532, 658, 673, 1364
Sau96I	GGNCC	2 cut(s)	340, 1210
SchI	GAGTC	1 cut(s)	894
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	1 cut(s)	1073
SfaNI	GCATC	3 cut(s)	619, 744, 1156
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	1210
SmiMI	CAYNNNNRTG	2 cut(s)	335, 1121
SmlI	CTYRAG	2 cut(s)	37, 518
SmoI	CTYRAG	2 cut(s)	37, 518
SpeI	ACTAGT	1 cut(s)	1282
Sse9I	AATT	9 cut(s)	280, 388, 547, 617, 634, 730, 785, 853, 1013
SsiI	CCGC	3 cut(s)	1078, 1208, 1220
SspMI	CTAG	4 cut(s)	239, 584, 591, 1283
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	2 cut(s)	259, 343
TaaI	ACNGT	3 cut(s)	454, 830, 971
TaiI	ACGT	1 cut(s)	1310
TaqI	TCGA	2 cut(s)	492, 676
TasI	AATT	9 cut(s)	280, 388, 547, 617, 634, 730, 785, 853, 1013
TatI	WGTACW	1 cut(s)	1398
TfiI	GAWTC	4 cut(s)	796, 983, 1047, 1060
Tru1I	TTAA	5 cut(s)	48, 476, 579, 1241, 1274
Tru9I	TTAA	5 cut(s)	48, 476, 579, 1241, 1274
TscAI	CASTG	5 cut(s)	64, 337, 457, 695, 1123
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	4 cut(s)	438, 486, 1198, 1358
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	9 cut(s)	126, 174, 316, 662, 932, 957, 1206, 1281, 1281
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	5 cut(s)	64, 337, 457, 695, 1123
VpaK11BI	GGWCC	1 cut(s)	1210
XapI	RAATTY	3 cut(s)	388, 853, 1013
XceI	RCATGY	2 cut(s)	87, 811
XspI	CTAG	4 cut(s)	239, 584, 591, 1283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.