Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008460

Physical Location & Seq

Genomic Coordinates Reverse (-)

48371617 .. 48373017

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGATTATTTACCCGAGCAGTTAATTTGGGAGATCTTGAGCAGGATTAAGAAAACCACTGATAGAAACTCCGTGTCTTTGACATGTAAACGACTGAATGGATTGGATAATGAACAGAGGCAAGCCCTTCGGGTTGGTTGTGGATTAGACCCTGCTAATGAAGCTTTGACTTCTCTCTGCAGTAGGTTTCTCAACTTGACAAAGGTAGAGATAACTTACGCCGGTTGGATGTCCAAACTAGGAAAGCAGTTGGATGACCATGGGCTTCTTGTTCTTTCCAATTACTGCCCTTCTTTGGTTGATCTCTCACTAAGCTACTGCACATTCATCACTGATGTGGGCCTTGGTTATTTGTCTTCTTGCTCAAAGCTTTCAGCTTTGAAGTTGAATTTCACCCCAAGAATAACTGGCTGTGGCATATTATCTCTTGTTGTGGGCTGCAAAAATCTCACTGTTCTCCATCTCATCCGATGTTTAAATGTTAGCAGCGTCGAGTGGCTTGAATATCTTGGCAGGCTTGAGACACTTGAAGATCTCAATCAAGAATTCTTGATAAATTGCATCATCAGCCCAGGAAGGGGACTTGCTTGTGTGATGGGGAAGTGCAAGAAATTGGAGAAGATTCACTTGGACATGTGTGTTGGGGTACGGGACTGTGACATAATAGGCTTAGCCCAAAATTCAAGTAATCTTCGCTCCATTTACCTCCGAGTCCCGTCAGATTTCTCACTTCCTCTTCTGATGAATAACCCTTTGAGACTAACCGATGAATGCCTAAATGCCTTGTCCAGTAACTGTTCAATGCTTGAATCTGTCAGGATATCTTACTCTGATGGGGAATTCCCTTCCTTTTCCTCATTTACATTACAGGGAATCATTACTTTGATTCAGAAGTGCCCTGTGCGGGAACTTGCTTTTGACCAAGTGTATTCCTTCAACGACACTGGGATGGAAGCTCTTTGCTTTGCTCAGCATCTTGAAACATTGGAGCTTGTCAGGTGCCAAGAGATAAGTGATGAAGGGCTGCAACTTGCGGTCCAGTTTCCGCGATTGTCTGTTCTGCGTTTAATCAAGTGTTTGGGAGTTTCTGATGAAGGTTTAAGGCCACTAGTAGGTTCATTCAAACTGGAAACGTTGGCTGTGGAAGATTGGCCCCAAGTCTCTGAAAGAGGAGTATTTGGAGCTGCAAGATCTGTTTCTTTCAGACAAGACCTGTCATGGATGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

409

Amino Acids

45.65

Weight (kDa)

5.46

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80570 AT1G80570 AT1G80570
fragaria_vesca	FvH4_6g29021 FvH4_6g29021
malus_domestica	MD17G1219000.v1.1
prunus_persica	Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1
pyrus_communis	pycom17g22380
rosa_chinensis	RchiOBHm_Chr2g0133701
rosa_laevigata	RLG00000019357
rosa_multiflora	Rmu_sc0000924.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110890
rosa_rugosa	Rorug02G0313100
rosa_samantha	Rh2AG366500 Rh2BG372100 Rh2CG349600 Rh2DG389000
rosa_wichuraiana	Rw2G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	999
AccII	CGCG	1 cut(s)	1048
AciI	CCGC	3 cut(s)	904, 1034, 1046
AclI	AACGTT	1 cut(s)	1133
AcsI	RAATTY	4 cut(s)	388, 545, 679, 839
AfaI	GTAC	2 cut(s)	648, 1226
AfiI	CCNNNNNNNGG	5 cut(s)	295, 577, 578, 904, 1112
AflIII	ACRYGT	2 cut(s)	83, 633
AhlI	ACTAGT	1 cut(s)	1108
AjnI	CCWGG	1 cut(s)	571
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	7 cut(s)	164, 315, 370, 377, 956, 991, 1184
AluI	AGCT	7 cut(s)	164, 315, 370, 377, 956, 991, 1184
Alw26I	GTCTC	3 cut(s)	515, 751, 1165
AlwNI	CAGNNNCTG	1 cut(s)	795
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	3 cut(s)	340, 1103, 1151
ApeKI	GCWGC	4 cut(s)	438, 486, 1024, 1184
ApoI	RAATTY	4 cut(s)	388, 545, 679, 839
AspS9I	GGNCC	3 cut(s)	340, 1036, 1152
AsuHPI	GGTGA	1 cut(s)	385
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	1036
BaeGI	GKGCMC	1 cut(s)	899
BanI	GGYRCC	1 cut(s)	999
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	425, 498, 1011, 1171
BccI	CCATC	4 cut(s)	468, 589, 827, 943
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	573
BcoDI	GTCTC	3 cut(s)	515, 751, 1165
BcuI	ACTAGT	1 cut(s)	1108
BfaI	CTAG	2 cut(s)	239, 1109
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	3 cut(s)	33, 532, 1190
BisI	GCNGC	4 cut(s)	439, 487, 1025, 1185
BlpI	GCTNAGC	2 cut(s)	670, 969
BlsI	GCNGC	4 cut(s)	440, 488, 1026, 1186
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	1 cut(s)	1036
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	3 cut(s)	340, 1036, 1152
BmiI	GGNNCC	2 cut(s)	1001, 1154
BmrFI	CCNGG	1 cut(s)	573
BmrI	ACTGGG	1 cut(s)	954
BmsI	GCATC	2 cut(s)	570, 982
BmuI	ACTGGG	1 cut(s)	954
BpiI	GAAGAC	1 cut(s)	348
Bpu1102I	GCTNAGC	2 cut(s)	670, 969
BpuEI	CTTGAG	2 cut(s)	58, 539
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	3 cut(s)	259, 343, 571
Bsc4I	CCNNNNNNNGG	5 cut(s)	295, 577, 578, 904, 1112
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	5 cut(s)	412, 789, 949, 1039, 1131
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	259, 343, 571
BseGI	GGATG	5 cut(s)	234, 259, 465, 954, 1227
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	5 cut(s)	295, 577, 578, 904, 1112
BseMII	CTCAG	1 cut(s)	983
BseNI	ACTGG	5 cut(s)	412, 789, 949, 1039, 1131
BseRI	GAGGAG	1 cut(s)	1185
BseSI	GKGCMC	1 cut(s)	899
BseXI	GCAGC	4 cut(s)	425, 498, 1011, 1171
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	1048
BshFI	GGCC	3 cut(s)	342, 1105, 1153
BshNI	GGYRCC	1 cut(s)	999
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	3 cut(s)	594, 665, 698
BslI	CCNNNNNNNGG	5 cut(s)	295, 577, 578, 904, 1112
BsmAI	GTCTC	3 cut(s)	515, 751, 1165
BsmFI	GGGAC	3 cut(s)	594, 665, 698
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	3 cut(s)	342, 1105, 1153
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp143I	GATC	4 cut(s)	33, 301, 532, 1190
Bsp1720I	GCTNAGC	2 cut(s)	670, 969
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	3 cut(s)	904, 1034, 1046
BspANI	GGCC	3 cut(s)	342, 1105, 1153
BspCNI	CTCAG	1 cut(s)	982
BspFNI	CGCG	1 cut(s)	1048
BspLI	GGNNCC	2 cut(s)	1001, 1154
BspMAI	CTGCAG	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	999
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	5 cut(s)	412, 789, 949, 1039, 1131
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	259, 343, 571
BssMI	GATC	4 cut(s)	33, 301, 532, 1190
BssT1I	CCWWGG	2 cut(s)	259, 343
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	3 cut(s)	454, 656, 797
Bst6I	CTCTTC	1 cut(s)	741
BstC8I	GCNNGC	2 cut(s)	123, 515
BstDEI	CTNAG	3 cut(s)	311, 670, 969
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	5 cut(s)	234, 259, 465, 954, 1227
BstFNI	CGCG	1 cut(s)	1048
BstKTI	GATC	4 cut(s)	36, 304, 535, 1193
BstMAI	GTCTC	3 cut(s)	515, 751, 1165
BstMBI	GATC	4 cut(s)	33, 301, 532, 1190
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 567
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	2 cut(s)	87, 637
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	899
BstUI	CGCG	1 cut(s)	1048
BstV1I	GCAGC	4 cut(s)	425, 498, 1011, 1171
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	3 cut(s)	33, 532, 1190
BstYI	RGATCY	3 cut(s)	33, 532, 1190
BsuRI	GGCC	3 cut(s)	342, 1105, 1153
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	5 cut(s)	234, 259, 465, 954, 1227
BtsIMutI	CAGTG	4 cut(s)	57, 330, 450, 942
Cac8I	GCNNGC	2 cut(s)	123, 515
CaiI	CAGNNNCTG	1 cut(s)	795
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	340, 1036, 1152
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	647, 1225
CviAII	CATG	4 cut(s)	84, 260, 634, 1218
CviQI	GTAC	2 cut(s)	647, 1225
DdeI	CTNAG	3 cut(s)	311, 670, 969
DpnI	GATC	4 cut(s)	35, 303, 534, 1192
DpnII	GATC	4 cut(s)	33, 301, 532, 1190
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Eco130I	CCWWGG	2 cut(s)	259, 343
Eco32I	GATATC	1 cut(s)	822
Eco47I	GGWCC	1 cut(s)	1036
Eco88I	CYCGRG	1 cut(s)	14
EcoRI	GAATTC	2 cut(s)	545, 839
EcoRII	CCWGG	1 cut(s)	571
EcoRV	GATATC	1 cut(s)	822
EcoT14I	CCWWGG	2 cut(s)	259, 343
ErhI	CCWWGG	2 cut(s)	259, 343
FaeI	CATG	4 cut(s)	87, 263, 637, 1221
FaiI	YATR	6 cut(s)	85, 261, 419, 635, 662, 1219
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	3 cut(s)	594, 665, 698
FatI	CATG	4 cut(s)	83, 259, 633, 1217
FauI	CCCGC	1 cut(s)	897
Fnu4HI	GCNGC	4 cut(s)	439, 487, 1025, 1185
FokI	GGATG	4 cut(s)	241, 266, 452, 961
Fsp4HI	GCNGC	4 cut(s)	439, 487, 1025, 1185
FspBI	CTAG	2 cut(s)	239, 1109
GluI	GCNGC	4 cut(s)	439, 487, 1025, 1185
HaeIII	GGCC	3 cut(s)	342, 1105, 1153
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	87, 263, 637, 1221
HindIII	AAGCTT	2 cut(s)	162, 368
HinfI	GANTC	5 cut(s)	622, 711, 809, 873, 886
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	9 cut(s)	470, 710, 721, 741, 832, 891, 1090, 1165, 1205
Hpy188III	TCNNGA	5 cut(s)	37, 542, 550, 817, 977
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	7 cut(s)	137, 300, 570, 855, 943, 1013, 1088
HpyCH4III	ACNGT	3 cut(s)	454, 656, 797
HpyCH4IV	ACGT	1 cut(s)	1133
HpyCH4V	TGCA	7 cut(s)	180, 321, 441, 561, 606, 1027, 1187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 567
HpyF3I	CTNAG	3 cut(s)	311, 670, 969
HpySE526I	ACGT	1 cut(s)	1133
Hsp92II	CATG	4 cut(s)	87, 263, 637, 1221
Kzo9I	GATC	4 cut(s)	33, 301, 532, 1190
LmnI	GCTCC	3 cut(s)	701, 988, 1181
Lsp1109I	GCAGC	4 cut(s)	425, 498, 1011, 1171
LweI	GCATC	2 cut(s)	570, 982
MaeI	CTAG	2 cut(s)	239, 1109
MaeII	ACGT	1 cut(s)	1133
MaeIII	GTNAC	2 cut(s)	656, 791
MalI	GATC	4 cut(s)	35, 303, 534, 1192
MboI	GATC	4 cut(s)	33, 301, 532, 1190
MboII	GAAGA	6 cut(s)	348, 542, 631, 683, 728, 1157
MflI	RGATCY	3 cut(s)	33, 532, 1190
MhlI	GDGCHC	1 cut(s)	899
MluCI	AATT	8 cut(s)	24, 280, 388, 545, 556, 611, 679, 839
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	2 cut(s)	206, 231
MnlI	CCTC	5 cut(s)	111, 716, 744, 865, 1163
MseI	TTAA	5 cut(s)	23, 48, 476, 1067, 1100
MslI	CAYNNNNRTG	2 cut(s)	335, 947
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	776
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	1 cut(s)	1048
MwoI	GCNNNNNNNGC	2 cut(s)	161, 567
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	4 cut(s)	33, 301, 532, 1190
NlaIII	CATG	4 cut(s)	87, 263, 637, 1221
NlaIV	GGNNCC	2 cut(s)	1001, 1154
NmuCI	GTSAC	1 cut(s)	656
NspI	RCATGY	2 cut(s)	87, 637
OliI	CACNNNNGTG	1 cut(s)	335
PciI	ACATGT	2 cut(s)	83, 633
PctI	GAATGC	1 cut(s)	776
PfeI	GAWTC	4 cut(s)	622, 809, 873, 886
PkrI	GCNGC	4 cut(s)	440, 488, 1026, 1186
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PscI	ACATGT	2 cut(s)	83, 633
Psp1406I	AACGTT	1 cut(s)	1133
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	1001, 1154
PspPI	GGNCC	3 cut(s)	340, 1036, 1152
PstI	CTGCAG	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	795
PsuI	RGATCY	3 cut(s)	33, 532, 1190
RsaI	GTAC	2 cut(s)	648, 1226
RsaNI	GTAC	2 cut(s)	647, 1225
RseI	CAYNNNNRTG	2 cut(s)	335, 947
SaqAI	TTAA	5 cut(s)	23, 48, 476, 1067, 1100
SatI	GCNGC	4 cut(s)	439, 487, 1025, 1185
Sau3AI	GATC	4 cut(s)	33, 301, 532, 1190
Sau96I	GGNCC	3 cut(s)	340, 1036, 1152
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	2 cut(s)	570, 982
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	1036
SmiMI	CAYNNNNRTG	2 cut(s)	335, 947
SmlI	CTYRAG	2 cut(s)	37, 518
SmoI	CTYRAG	2 cut(s)	37, 518
SpeI	ACTAGT	1 cut(s)	1108
Sse9I	AATT	8 cut(s)	24, 280, 388, 545, 556, 611, 679, 839
SsiI	CCGC	3 cut(s)	904, 1034, 1046
SspMI	CTAG	2 cut(s)	239, 1109
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	2 cut(s)	259, 343
TaaI	ACNGT	3 cut(s)	454, 656, 797
TaiI	ACGT	1 cut(s)	1136
TaqI	TCGA	1 cut(s)	492
TasI	AATT	8 cut(s)	24, 280, 388, 545, 556, 611, 679, 839
TatI	WGTACW	1 cut(s)	1224
TfiI	GAWTC	4 cut(s)	622, 809, 873, 886
Tru1I	TTAA	5 cut(s)	23, 48, 476, 1067, 1100
Tru9I	TTAA	5 cut(s)	23, 48, 476, 1067, 1100
TscAI	CASTG	4 cut(s)	64, 337, 457, 949
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	4 cut(s)	438, 486, 1024, 1184
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	8 cut(s)	126, 174, 316, 758, 783, 1032, 1107, 1107
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	4 cut(s)	64, 337, 457, 949
VpaK11BI	GGWCC	1 cut(s)	1036
XapI	RAATTY	4 cut(s)	388, 545, 679, 839
XceI	RCATGY	2 cut(s)	87, 637
XspI	CTAG	2 cut(s)	239, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.