FvH4_6g29021

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008460
Physical Location & Seq
Reverse (-)
22403027 .. 22406234
3208 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29021.t1

Sequence Viewer

Length: 1404 bp
ATGGATTATTTACCGGAGCAGTTAGTTTGGGAGATCTTGAGGAGGATCAAGAAAACAACTGATAGAAACTCTGTGTCTTTGACATGTAAACGCCTGCATGGATTGGATAATGAACAGAGGGAATCCCTTCGGGTAGGCTGTGGATTAAACCCTGCTAATGAAGCTTTGACTTCTCTCTGCAGTAGGTTTCTCAACTTGACAAAGGTAGAGATAACTTACACTGGTTGGATGTCCAAACTAGGAAAGCAGTTGGATGACCAAGGGCTTCTTATTCTTTCCAATCACTGCCCCTCTATGATTGAACTATCTCTAAGCTACTGCACATTCATCAGTGATGTCGGCCTTGGTTACTTGTCATCTTGCTCAAAGCTTTCAGCTTTGAAGTTGAATTTTACCCCAAGAATAACTGGCTGTGGCATATTATCTCTTGTTATGGGCTGCAAAATTCTCACTGTTCTCCACCTCATCCGATGTTTAAATGTTAACAGCGTCGAGTGGCTTGAATATCTTGGCAGGCTTGGAACACTTCAAGATCTCTCAATCAAAAATTGTAAAGCTATCGGGGAGGGCAATTTGATTAAGCTAGGCGCTAGTTGGAGAAACCTGAAACGCTTGCAATTTGAGGTGGATGCCAATTACAGGTACATGAAAGTTTATGATCGTTTAGCTGTTGATCGATGGCAAAAGCAGTGGGTTCCTTGTGAGAATATGGTGGAACTTAGCTTGATAAATTGCATCATCAGCCCAGGGAGGGGTCTTGCTTGTGTGATGAGGAAGTGCAAGAAATTGGAGAAGATTCACTTGGACATGTGTGTTGGTGTACGGGACTGTGACATAATAGGCTTAGCCCAAAATTCAAGTAATCTTCGCTCCATTTACCTCCGAGTCCCATCAGATTTCTCACTTCCTCTTCTGATGAATAACCCTTTGAGATTAACCGATGAATGCCTGAATGCCTTGTCTAGTAACTGTTCAAAGCTTGAATCTATTCGGATATCTTACTCTGATGGGGAATTCCCTTCCTTTTCCTCATTTACATTACAGGGAATCATTACTTTGATCCAGAAGTGTCCTGTGCGGGAACTTGCTTTTGACCAGGTGTATTCCTTCAACGATGCTGGGATGGAAGCTCTTTGCTTTGCTCAGCATCTTGAAACATTGGAGCTTGTCAGGTGCCAAGAGATAAGTGACGAAGGGCTGCAACTTGCGGTCCAATTTCCGCGATTGTCTGTTTTGCGTTTAGTCAAATGTTTGGGAGTTTCTGATGAAGGTTTTAGGCCACTAGTAGGTTCATATAAACTGGAAACGTTGGCTGTGGAAGGTTGTCCCCAAGTTTCTGAAAGAGGAGTATTTGGAGCTGCAAGATCTGTTTCTTTCAGACAAGACTTGTCATGGATGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
F-box LRR_6

Protein Analysis

468

Amino Acids

52.58

Weight (kDa)

8.25

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 376 - 450 9.2e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1173
AccII CGCG 1 cut(s) 1222
AciI CCGC 3 cut(s) 1078, 1208, 1220
AclI AACGTT 1 cut(s) 1307
AclWI GGATC 2 cut(s) 53, 1054
AcsI RAATTY 4 cut(s) 388, 444, 853, 1013
AfaI GTAC 3 cut(s) 644, 822, 1400
AfiI CCNNNNNNNGG 4 cut(s) 639, 751, 752, 1286
AflIII ACRYGT 2 cut(s) 83, 807
AhlI ACTAGT 1 cut(s) 1282
AjnI CCWGG 2 cut(s) 745, 1095
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AlwI GGATC 2 cut(s) 53, 1054
AoxI GGCC 2 cut(s) 340, 1277
ApeKI GCWGC 3 cut(s) 438, 1198, 1358
ApoI RAATTY 4 cut(s) 388, 444, 853, 1013
Asp700I GAANNNNTTC 2 cut(s) 126, 987
AspLEI GCGC 1 cut(s) 590
AspS9I GGNCC 1 cut(s) 1210
AvaII GGWCC 1 cut(s) 1210
BanI GGYRCC 1 cut(s) 1173
BbvI GCAGC 3 cut(s) 425, 1185, 1345
BccI CCATC 4 cut(s) 672, 898, 1001, 1117
BciT130I CCWGG 2 cut(s) 747, 1097
BcuI ACTAGT 1 cut(s) 1282
BfaI CTAG 5 cut(s) 239, 584, 591, 963, 1283
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 591
BglII AGATCT 3 cut(s) 33, 532, 1364
BisI GCNGC 3 cut(s) 439, 1199, 1359
BlpI GCTNAGC 2 cut(s) 844, 1143
BlsI GCNGC 3 cut(s) 440, 1200, 1360
Bme1390I CCNGG 2 cut(s) 747, 1097
Bme18I GGWCC 1 cut(s) 1210
BmgT120I GGNCC 1 cut(s) 1210
BmiI GGNNCC 2 cut(s) 696, 1175
BmrFI CCNGG 2 cut(s) 747, 1097
BmsI GCATC 4 cut(s) 619, 744, 1105, 1156
Bpu1102I GCTNAGC 2 cut(s) 844, 1143
BpuEI CTTGAG 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 676
BsaJI CCNNGG 4 cut(s) 259, 343, 745, 746
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 4 cut(s) 639, 751, 752, 1286
Bse1I ACTGG 3 cut(s) 226, 412, 1305
BseBI CCWGG 2 cut(s) 747, 1097
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 4 cut(s) 259, 343, 745, 746
BseGI GGATG 6 cut(s) 234, 259, 465, 634, 1128, 1401
BseLI CCNNNNNNNGG 4 cut(s) 639, 751, 752, 1286
BseMII CTCAG 1 cut(s) 1157
BseNI ACTGG 3 cut(s) 226, 412, 1305
BseRI GAGGAG 2 cut(s) 55, 1359
BseXI GCAGC 3 cut(s) 425, 1185, 1345
BseYI CCCAGC 1 cut(s) 1118
BsgI GTGCAG 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 1222
BshFI GGCC 2 cut(s) 342, 1279
BshNI GGYRCC 1 cut(s) 1173
BshVI ATCGAT 1 cut(s) 676
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 3 cut(s) 839, 872, 1311
BslI CCNNNNNNNGG 4 cut(s) 639, 751, 752, 1286
BsmFI GGGAC 3 cut(s) 839, 872, 1311
BsmI GAATGC 2 cut(s) 950, 958
BsnI GGCC 2 cut(s) 342, 1279
Bsp143I GATC 7 cut(s) 33, 45, 532, 658, 673, 1059, 1364
Bsp1720I GCTNAGC 2 cut(s) 844, 1143
BspACI CCGC 3 cut(s) 1078, 1208, 1220
BspANI GGCC 2 cut(s) 342, 1279
BspCNI CTCAG 1 cut(s) 1156
BspDI ATCGAT 1 cut(s) 676
BspFNI CGCG 1 cut(s) 1222
BspLI GGNNCC 2 cut(s) 696, 1175
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 2 cut(s) 53, 1054
BspT107I GGYRCC 1 cut(s) 1173
BsrI ACTGG 3 cut(s) 226, 412, 1305
BssECI CCNNGG 4 cut(s) 259, 343, 745, 746
BssMI GATC 7 cut(s) 33, 45, 532, 658, 673, 1059, 1364
BssT1I CCWWGG 2 cut(s) 259, 343
Bst2UI CCWGG 2 cut(s) 747, 1097
Bst4CI ACNGT 3 cut(s) 454, 830, 971
Bst6I CTCTTC 1 cut(s) 915
BstC8I GCNNGC 3 cut(s) 95, 515, 614
BstDEI CTNAG 4 cut(s) 311, 719, 844, 1143
BstF5I GGATG 6 cut(s) 234, 259, 465, 634, 1128, 1401
BstFNI CGCG 1 cut(s) 1222
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 7 cut(s) 36, 48, 535, 661, 676, 1062, 1367
BstMBI GATC 7 cut(s) 33, 45, 532, 658, 673, 1059, 1364
BstMWI GCNNNNNNNGC 2 cut(s) 161, 741
BstNI CCWGG 2 cut(s) 747, 1097
BstNSI RCATGY 2 cut(s) 87, 811
BstSCI CCNGG 2 cut(s) 745, 1095
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 1 cut(s) 1222
BstV1I GCAGC 3 cut(s) 425, 1185, 1345
BstX2I RGATCY 3 cut(s) 33, 532, 1364
BstYI RGATCY 3 cut(s) 33, 532, 1364
Bsu15I ATCGAT 1 cut(s) 676
BsuRI GGCC 2 cut(s) 342, 1279
BsuTUI ATCGAT 1 cut(s) 676
BtsCI GGATG 6 cut(s) 234, 259, 465, 634, 1128, 1401
BtsI GCAGTG 2 cut(s) 283, 695
BtsIMutI CAGTG 5 cut(s) 219, 283, 337, 450, 695
Cac8I GCNNGC 3 cut(s) 95, 515, 614
CfoI GCGC 1 cut(s) 590
Cfr13I GGNCC 1 cut(s) 1210
ClaI ATCGAT 1 cut(s) 676
CseI GACGC 1 cut(s) 478
CsiI ACCWGGT 1 cut(s) 1095
Csp6I GTAC 3 cut(s) 643, 821, 1399
CspCI CAANNNNNGTGG 2 cut(s) 671, 706
CviAII CATG 5 cut(s) 84, 98, 646, 808, 1392
CviQI GTAC 3 cut(s) 643, 821, 1399
DdeI CTNAG 4 cut(s) 311, 719, 844, 1143
DpnI GATC 7 cut(s) 35, 47, 534, 660, 675, 1061, 1366
DpnII GATC 7 cut(s) 33, 45, 532, 658, 673, 1059, 1364
DraI TTTAAA 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 915
EarI CTCTTC 1 cut(s) 915
Eco130I CCWWGG 2 cut(s) 259, 343
Eco32I GATATC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 1210
EcoRI GAATTC 1 cut(s) 1013
EcoRII CCWGG 2 cut(s) 745, 1095
EcoRV GATATC 1 cut(s) 996
EcoT14I CCWWGG 2 cut(s) 259, 343
ErhI CCWWGG 2 cut(s) 259, 343
FaeI CATG 5 cut(s) 87, 101, 649, 811, 1395
FalI AAGNNNNNCTT 4 cut(s) 252, 284, 785, 817
FaqI GGGAC 3 cut(s) 839, 872, 1311
FatI CATG 5 cut(s) 83, 97, 645, 807, 1391
FauI CCCGC 1 cut(s) 1071
Fnu4HI GCNGC 3 cut(s) 439, 1199, 1359
FokI GGATG 5 cut(s) 241, 266, 452, 641, 1135
Fsp4HI GCNGC 3 cut(s) 439, 1199, 1359
FspBI CTAG 5 cut(s) 239, 584, 591, 963, 1283
GlaI GCGC 1 cut(s) 589
GluI GCNGC 3 cut(s) 439, 1199, 1359
GsaI CCCAGC 1 cut(s) 1122
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 2 cut(s) 342, 1279
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 478
HhaI GCGC 1 cut(s) 590
Hin1II CATG 5 cut(s) 87, 101, 649, 811, 1395
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 3 cut(s) 162, 368, 977
HinfI GANTC 5 cut(s) 122, 796, 885, 983, 1047
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 3 cut(s) 89, 484, 821
Hpy188I TCNGA 9 cut(s) 470, 884, 895, 915, 993, 1006, 1264, 1339, 1379
Hpy188III TCNNGA 5 cut(s) 37, 49, 530, 1063, 1151
Hpy8I GTNNAC 3 cut(s) 89, 484, 821
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 6 cut(s) 137, 1029, 1117, 1187, 1262, 1313
HpyCH4III ACNGT 3 cut(s) 454, 830, 971
HpyCH4IV ACGT 1 cut(s) 1307
HpyCH4V TGCA 9 cut(s) 97, 180, 321, 441, 616, 735, 780, 1201, 1361
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 741
HpyF3I CTNAG 4 cut(s) 311, 719, 844, 1143
HpySE526I ACGT 1 cut(s) 1307
Hsp92II CATG 5 cut(s) 87, 101, 649, 811, 1395
HspAI GCGC 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 7 cut(s) 33, 45, 532, 658, 673, 1059, 1364
LmnI GCTCC 4 cut(s) 16, 875, 1162, 1355
Lsp1109I GCAGC 3 cut(s) 425, 1185, 1345
LweI GCATC 4 cut(s) 619, 744, 1105, 1156
MabI ACCWGGT 1 cut(s) 1095
MaeI CTAG 5 cut(s) 239, 584, 591, 963, 1283
MaeII ACGT 1 cut(s) 1307
MaeIII GTNAC 4 cut(s) 347, 830, 965, 1187
MalI GATC 7 cut(s) 35, 47, 534, 660, 675, 1061, 1366
MboI GATC 7 cut(s) 33, 45, 532, 658, 673, 1059, 1364
MboII GAAGA 3 cut(s) 805, 857, 902
MflI RGATCY 3 cut(s) 33, 532, 1364
MlyI GAGTC 1 cut(s) 894
MmeI TCCRAC 3 cut(s) 206, 231, 575
MroXI GAANNNNTTC 2 cut(s) 126, 987
MseI TTAA 5 cut(s) 146, 476, 483, 579, 935
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 747, 1097
Mva1269I GAATGC 2 cut(s) 950, 958
MvaI CCWGG 2 cut(s) 747, 1097
MvnI CGCG 1 cut(s) 1222
MwoI GCNNNNNNNGC 2 cut(s) 161, 741
NdeII GATC 7 cut(s) 33, 45, 532, 658, 673, 1059, 1364
NlaIII CATG 5 cut(s) 87, 101, 649, 811, 1395
NlaIV GGNNCC 2 cut(s) 696, 1175
NmuCI GTSAC 2 cut(s) 830, 1187
NspI RCATGY 2 cut(s) 87, 811
PasI CCCWGGG 1 cut(s) 746
PciI ACATGT 2 cut(s) 83, 807
PctI GAATGC 2 cut(s) 950, 958
PdmI GAANNNNTTC 2 cut(s) 126, 987
PfeI GAWTC 4 cut(s) 122, 796, 983, 1047
PkrI GCNGC 3 cut(s) 440, 1200, 1360
PleI GAGTC 1 cut(s) 893
PpsI GAGTC 1 cut(s) 893
PscI ACATGT 2 cut(s) 83, 807
Psp1406I AACGTT 1 cut(s) 1307
Psp6I CCWGG 2 cut(s) 745, 1095
PspFI CCCAGC 1 cut(s) 1118
PspGI CCWGG 2 cut(s) 745, 1095
PspN4I GGNNCC 2 cut(s) 696, 1175
PspPI GGNCC 1 cut(s) 1210
PstI CTGCAG 1 cut(s) 182
PsuI RGATCY 3 cut(s) 33, 532, 1364
RsaI GTAC 3 cut(s) 644, 822, 1400
RsaNI GTAC 3 cut(s) 643, 821, 1399
SaqAI TTAA 5 cut(s) 146, 476, 483, 579, 935
SatI GCNGC 3 cut(s) 439, 1199, 1359
Sau3AI GATC 7 cut(s) 33, 45, 532, 658, 673, 1059, 1364
Sau96I GGNCC 1 cut(s) 1210
SchI GAGTC 1 cut(s) 894
ScrFI CCNGG 2 cut(s) 747, 1097
SexAI ACCWGGT 1 cut(s) 1095
SfaNI GCATC 4 cut(s) 619, 744, 1105, 1156
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 1210
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SpeI ACTAGT 1 cut(s) 1282
SsiI CCGC 3 cut(s) 1078, 1208, 1220
SspMI CTAG 5 cut(s) 239, 584, 591, 963, 1283
StyD4I CCNGG 2 cut(s) 745, 1095
StyI CCWWGG 2 cut(s) 259, 343
TaaI ACNGT 3 cut(s) 454, 830, 971
TaiI ACGT 1 cut(s) 1310
TaqI TCGA 2 cut(s) 492, 676
TatI WGTACW 1 cut(s) 1398
TfiI GAWTC 4 cut(s) 122, 796, 983, 1047
Tru1I TTAA 5 cut(s) 146, 476, 483, 579, 935
Tru9I TTAA 5 cut(s) 146, 476, 483, 579, 935
TscAI CASTG 5 cut(s) 226, 290, 337, 457, 695
TseFI GTSAC 2 cut(s) 830, 1187
TseI GCWGC 3 cut(s) 438, 1198, 1358
Tsp45I GTSAC 2 cut(s) 830, 1187
TspDTI ATGAA 8 cut(s) 126, 174, 316, 662, 932, 957, 1281, 1281
TspRI CASTG 5 cut(s) 226, 290, 337, 457, 695
VpaK11BI GGWCC 1 cut(s) 1210
XapI RAATTY 4 cut(s) 388, 444, 853, 1013
XceI RCATGY 2 cut(s) 87, 811
XmnI GAANNNNTTC 2 cut(s) 126, 987
XspI CTAG 5 cut(s) 239, 584, 591, 963, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.