Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008460

Physical Location & Seq

Genomic Coordinates Forward (+)

37905068 .. 37905769

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0313100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTAGAGCAAGCATTGAAGCTTAAAATGGAGAATTTTGAGAAGTTACTCATGTTGATTTGGGGTCTATGGACTAATCGGAACACAAAGTTGTGGGAAGACACTTCTGGTAGTGCTACTGACATCATGTTCAAGTGTTTCTCATGGCTTGATGAATTCCAAAAGTCTAGAATCACTACATCTGCATCGATATTGCCTACTGTACAGACTTGGAAGCCTGCCAGCTCTGCAGAGTTTAAACTCAATTTTGATGGGGCTTTTGTGCCCCAAATGACTAAATGGGGTCTTGGGGGGCTTCTCCGAACATCCAGTGGACAGGTTGCTGCTGCTTTTCAATCTGTCTCTCTCTATGTCGCTGTTAATGATATCCACAGCTACTCTTCATTACATACGGGGTATGGTTCCCTTATTGAGGATATTCACAGGACCTTGAATAGTTCGCAGCAAGTGCAAATTTGCTATGCTCCCTGTACGTGTAACATGATAGCTCATAGATTAGCTAGCTTAGCCTTTGAGTCTGAGCAATGTCGGTTTTGGTACAACTCAACCCCAGATTGTATTCGGGATTTAATTCAAAAGGAGACTCCCACTCCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

6.41

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80570 AT1G80570 AT1G80570
fragaria_vesca	FvH4_6g29021 FvH4_6g29021
malus_domestica	MD17G1219000.v1.1
prunus_persica	Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1
pyrus_communis	pycom17g22380
rosa_chinensis	RchiOBHm_Chr2g0133701
rosa_laevigata	RLG00000019357
rosa_multiflora	Rmu_sc0000924.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110890
rosa_rugosa	Rorug02G0313100
rosa_samantha	Rh2AG366500 Rh2BG372100 Rh2CG349600 Rh2DG389000
rosa_wichuraiana	Rw2G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	34, 155, 453
AfaI	GTAC	3 cut(s)	204, 472, 539
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	5 cut(s)	19, 133, 335, 433, 575
AluBI	AGCT	6 cut(s)	22, 225, 375, 488, 500, 504
AluI	AGCT	6 cut(s)	22, 225, 375, 488, 500, 504
Alw26I	GTCTC	2 cut(s)	346, 575
ApeKI	GCWGC	3 cut(s)	323, 326, 442
ApoI	RAATTY	3 cut(s)	34, 155, 453
AspS9I	GGNCC	1 cut(s)	426
AsuNHI	GCTAGC	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	426
BaeGI	GKGCMC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	310, 313, 454
BccI	CCATC	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	346, 575
BfaI	CTAG	2 cut(s)	168, 501
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	324, 327, 443
BlpI	GCTNAGC	1 cut(s)	505
BlsI	GCNGC	3 cut(s)	325, 328, 444
Bme18I	GGWCC	1 cut(s)	426
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	403
BmsI	GCATC	1 cut(s)	194
BmtI	GCTAGC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	474
BsaXI	ACNNNNNCTCC	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	530
BseCI	ATCGAT	1 cut(s)	188
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	310, 313, 454
BshVI	ATCGAT	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	2 cut(s)	346, 575
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	505
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	403
BspMAI	CTGCAG	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	385
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	474
BstC8I	GCNNGC	4 cut(s)	12, 219, 223, 502
BstDEI	CTNAG	2 cut(s)	505, 519
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	305
BstMAI	GTCTC	2 cut(s)	346, 575
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 448, 506
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	310, 313, 454
BstV2I	GAAGAC	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	4 cut(s)	12, 219, 223, 502
Cfr13I	GGNCC	1 cut(s)	426
ClaI	ATCGAT	1 cut(s)	188
Csp6I	GTAC	3 cut(s)	203, 471, 538
CviAII	CATG	4 cut(s)	52, 127, 144, 481
CviQI	GTAC	3 cut(s)	203, 471, 538
DdeI	CTNAG	2 cut(s)	505, 519
DraI	TTTAAA	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	155
EcoRV	GATATC	1 cut(s)	367
FaeI	CATG	4 cut(s)	55, 130, 147, 484
FatI	CATG	4 cut(s)	51, 126, 143, 480
Fnu4HI	GCNGC	3 cut(s)	324, 327, 443
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	3 cut(s)	324, 327, 443
FspBI	CTAG	2 cut(s)	168, 501
GluI	GCNGC	3 cut(s)	324, 327, 443
Hin1II	CATG	4 cut(s)	55, 130, 147, 484
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	171, 515, 583
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	3 cut(s)	81, 302, 520
Hpy188III	TCNNGA	2 cut(s)	168, 563
Hpy8I	GTNNAC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	3 cut(s)	185, 230, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 448, 506
HpyF3I	CTNAG	2 cut(s)	505, 519
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	4 cut(s)	55, 130, 147, 484
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	8 cut(s)	93, 231, 235, 302, 322, 409, 481, 564
Lsp1109I	GCAGC	3 cut(s)	310, 313, 454
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	2 cut(s)	168, 501
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	45, 476
MboII	GAAGA	2 cut(s)	110, 372
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	5 cut(s)	34, 155, 244, 453, 570
MlyI	GAGTC	2 cut(s)	524, 577
MnlI	CCTC	1 cut(s)	406
MseI	TTAA	5 cut(s)	24, 237, 360, 569, 598
MssI	GTTTAAAC	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	227, 448, 506
NheI	GCTAGC	1 cut(s)	500
NlaIII	CATG	4 cut(s)	55, 130, 147, 484
NlaIV	GGNNCC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	325, 328, 444
PleI	GAGTC	2 cut(s)	523, 577
PmeI	GTTTAAAC	1 cut(s)	238
PpsI	GAGTC	2 cut(s)	523, 577
Ppu21I	YACGTR	1 cut(s)	474
PpuMI	RGGWCCY	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	426
PspPPI	RGGWCCY	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	232
RsaI	GTAC	3 cut(s)	204, 472, 539
RsaNI	GTAC	3 cut(s)	203, 471, 538
SaqAI	TTAA	5 cut(s)	24, 237, 360, 569, 598
SatI	GCNGC	3 cut(s)	324, 327, 443
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	2 cut(s)	524, 577
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	24, 227, 321, 377, 431, 476, 490, 502, 506
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	426
Sse9I	AATT	5 cut(s)	34, 155, 244, 453, 570
SspMI	CTAG	2 cut(s)	168, 501
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	188
TasI	AATT	5 cut(s)	34, 155, 244, 453, 570
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	5 cut(s)	24, 237, 360, 569, 598
Tru9I	TTAA	5 cut(s)	24, 237, 360, 569, 598
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	3 cut(s)	323, 326, 442
TspDTI	ATGAA	2 cut(s)	168, 372
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	410
XapI	RAATTY	3 cut(s)	34, 155, 453
XbaI	TCTAGA	1 cut(s)	167
XspI	CTAG	2 cut(s)	168, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.