Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008460

Physical Location & Seq

Genomic Coordinates Forward (+)

7081643 .. 7084607

Gene Structure 2965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G094500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGATGGATTGTTTGCCGGACCAGTTAGTATGGGAGATCTTGAGCAGGGTTAAGAAAACCACTGATAGAAACTCTTTGTCTTTGGCGTGTAAACGCCTGCACGGATTGGATAATGAACAGAGACAATCTCTTCGGGTTGGTTGTGGATTAGACCCTGCAAATGAAGCTTTGACTTCTCTCTGCAGTAGGTTTTCCAACTTGACAAAGGTAGAGATAACTTACGCTGGTTGGATGTCCAAACTAGGAAAGCAGTTGGATGACGAAGGGCTTCTTATTCTTTCCAATTGCTGCCCTTCTATGGTTGATCTCACATTAAGCTACTGCACCTTCATCACTGATTTGGGCCTTGGTCACTTGTCTTCTTGCTCAAAACTTTCAGCTTTGAAGTTGAATTTCACAACAAGAATTACTGGCTGTGGCATATTATCTCTTGTTGCGGGCTGCAAAGTTCTCACTATCCTCCACCTTGTACGTTGTCTAAATGTTAGCAGTTTTGAGTGGCTTGAATATCTTGGAAAGCTTGAAACTCTTGAAGATCTCTCAATTAAGAATTGTAGAGCTATTGGGGAGGGTGATTTGATTAAGCTAGGTTCTAGTTGGAAAAAACTAAAATGCTTGCAATTTGAGGTAGATGTGAATTACAGATATATGAAAGTTTATGATCGTTCAGCTGTGGATCGCTGGCAAAAGCAGTGGGTCGCATGTGAGAACATGGTGGAACTTAGCTTGGTAAATTGTATCATCAGCCCTGGGAGGGGGCTCGCTTGTGTGCTGGGGAAGTGCAAGAATTTGGAGAAGATTCACTTGGACAAGTGTGTTGGGGTAAGGGACTCTGATATCATAGGCTTAGCCCAAAAATCAAAAAACCTCCGCTCCATTTTCCTTCGAGTTCCATCGGATTTCTCACTTCCTCTTCTGATGAATAATCCACTGAGATTAACCGATGAATGTCTAAAAGCCGTGGCTCAGAACTGTTCGATGCTTGAATCTGTCAGGATATCGTATTCTGATGGGGATTTCCCTTCATTTTCCTCATTTACATTGGATGGAATCCTTAGTTTGATTCAGAAGTGCCCTTTGCGGGAACTTGCTTTCGACCAAGTGTATTCCTTTAACGATGTTGGAATGGAAGCTCTTTGCTTGGCTCAGTATCTTGAGACCTTGGAGCTGGTCAAATGCCAAGAGATAAGCGACGAGGGGCTGCAGCTTGTGGGGCAGTTTCCCCGGTTGTCCATTCTGCGTTTAATCAAGTGTTTAGGGGTTTCTGATGATGGTTTAAAGCCACTTGTAGGGTCATACAAATTGGAATTGTTGGCTGTGGAAGATTGTCCTCAAATTTCTGAAAGAGGAGTTCTGGGAGCTGCAAAGTCTGTATCTTTCAGACAAGACTTGTCATGGCTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

469

Amino Acids

52.18

Weight (kDa)

6.47

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80570 AT1G80570 AT1G80570
fragaria_vesca	FvH4_6g29021 FvH4_6g29021
malus_domestica	MD17G1219000.v1.1
prunus_persica	Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1 Prupe.3G094500_v2.0.a1
pyrus_communis	pycom17g22380
rosa_chinensis	RchiOBHm_Chr2g0133701
rosa_laevigata	RLG00000019357
rosa_multiflora	Rmu_sc0000924.1_g000008
rosa_roxburghii	Rroxscaffold_2G00110890
rosa_rugosa	Rorug02G0313100
rosa_samantha	Rh2AG366500 Rh2BG372100 Rh2CG349600 Rh2DG389000
rosa_wichuraiana	Rw2G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	873
AciI	CCGC	3 cut(s)	437, 871, 1081
AclWI	GGATC	1 cut(s)	684
AcsI	RAATTY	3 cut(s)	391, 787, 1335
AfaI	GTAC	2 cut(s)	471, 1403
AfiI	CCNNNNNNNGG	5 cut(s)	298, 754, 755, 1081, 1289
AgsI	TTSAA	6 cut(s)	385, 391, 506, 524, 533, 986
AjnI	CCWGG	1 cut(s)	748
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
Alw26I	GTCTC	2 cut(s)	115, 1151
AlwI	GGATC	1 cut(s)	684
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	5 cut(s)	288, 441, 1201, 1204, 1361
ApoI	RAATTY	3 cut(s)	391, 787, 1335
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	19, 343
AsuC2I	CCSGG	1 cut(s)	1225
AsuHPI	GGTGA	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	1076
BanII	GRGCYC	1 cut(s)	762
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	5 cut(s)	275, 428, 1188, 1216, 1348
BccI	CCATC	4 cut(s)	901, 1004, 1040, 1265
BceAI	ACGGC	1 cut(s)	944
BciT130I	CCWGG	1 cut(s)	750
BcnI	CCSGG	1 cut(s)	1225
BcoDI	GTCTC	2 cut(s)	115, 1151
BfaI	CTAG	3 cut(s)	242, 587, 594
BfmI	CTRYAG	2 cut(s)	181, 1202
BglII	AGATCT	2 cut(s)	36, 535
BisI	GCNGC	5 cut(s)	289, 442, 1202, 1205, 1362
BlpI	GCTNAGC	1 cut(s)	847
BlsI	GCNGC	5 cut(s)	290, 443, 1203, 1206, 1363
Bme1390I	CCNGG	2 cut(s)	750, 1225
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	19, 343
BmrFI	CCNGG	2 cut(s)	750, 1225
BmsI	GCATC	1 cut(s)	969
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
Bpu1102I	GCTNAGC	1 cut(s)	847
BpuEI	CTTGAG	2 cut(s)	61, 1175
BpuMI	CCSGG	1 cut(s)	1225
BsaI	GGTCTC	1 cut(s)	1151
BsaJI	CCNNGG	6 cut(s)	346, 748, 749, 960, 1161, 1223
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	5 cut(s)	298, 754, 755, 1081, 1289
Bse1I	ACTGG	2 cut(s)	22, 415
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	6 cut(s)	346, 748, 749, 960, 1161, 1223
BseGI	GGATG	3 cut(s)	237, 262, 1051
BseLI	CCNNNNNNNGG	5 cut(s)	298, 754, 755, 1081, 1289
BseMII	CTCAG	3 cut(s)	923, 980, 1160
BseNI	ACTGG	2 cut(s)	22, 415
BseRI	GAGGAG	1 cut(s)	1362
BseSI	GKGCMC	1 cut(s)	1076
BseXI	GCAGC	5 cut(s)	275, 428, 1188, 1216, 1348
BseYI	CCCAGC	1 cut(s)	772
BsgI	GTGCAG	2 cut(s)	83, 307
BshFI	GGCC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	17, 1225
BslFI	GGGAC	1 cut(s)	842
BslI	CCNNNNNNNGG	5 cut(s)	298, 754, 755, 1081, 1289
BsmAI	GTCTC	2 cut(s)	115, 1151
BsmFI	GGGAC	1 cut(s)	842
BsnI	GGCC	1 cut(s)	345
Bso31I	GGTCTC	1 cut(s)	1151
Bsp1286I	GDGCHC	2 cut(s)	762, 1076
Bsp143I	GATC	5 cut(s)	36, 304, 535, 661, 676
Bsp1720I	GCTNAGC	1 cut(s)	847
BspACI	CCGC	3 cut(s)	437, 871, 1081
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	3 cut(s)	924, 979, 1159
BspMAI	CTGCAG	2 cut(s)	185, 1206
BspPI	GGATC	1 cut(s)	684
BspTNI	GGTCTC	1 cut(s)	1151
BsrBI	CCGCTC	1 cut(s)	873
BsrI	ACTGG	2 cut(s)	22, 415
BssECI	CCNNGG	6 cut(s)	346, 748, 749, 960, 1161, 1223
BssMI	GATC	5 cut(s)	36, 304, 535, 661, 676
BssT1I	CCWWGG	2 cut(s)	346, 1161
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	1 cut(s)	974
Bst6I	CTCTTC	2 cut(s)	135, 918
BstC8I	GCNNGC	5 cut(s)	98, 439, 617, 683, 762
BstDEI	CTNAG	6 cut(s)	722, 847, 932, 966, 1055, 1146
BstDSI	CCRYGG	1 cut(s)	960
BstF5I	GGATG	3 cut(s)	237, 262, 1051
BstKTI	GATC	5 cut(s)	39, 307, 538, 664, 679
BstMAI	GTCTC	2 cut(s)	115, 1151
BstMBI	GATC	5 cut(s)	36, 304, 535, 661, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 1213
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	2 cut(s)	748, 1223
BstSFI	CTRYAG	2 cut(s)	181, 1202
BstSLI	GKGCMC	1 cut(s)	1076
BstV1I	GCAGC	5 cut(s)	275, 428, 1188, 1216, 1348
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	36, 535
BstYI	RGATCY	2 cut(s)	36, 535
BsuRI	GGCC	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	960
BtsCI	GGATG	3 cut(s)	237, 262, 1051
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	4 cut(s)	60, 333, 698, 929
Cac8I	GCNNGC	5 cut(s)	98, 439, 617, 683, 762
Cfr13I	GGNCC	2 cut(s)	19, 343
Csp6I	GTAC	2 cut(s)	470, 1402
CspCI	CAANNNNNGTGG	2 cut(s)	674, 709
CviAII	CATG	3 cut(s)	702, 712, 1395
CviQI	GTAC	2 cut(s)	470, 1402
DdeI	CTNAG	6 cut(s)	722, 847, 932, 966, 1055, 1146
DpnI	GATC	5 cut(s)	38, 306, 537, 663, 678
DpnII	GATC	5 cut(s)	36, 304, 535, 661, 676
DraI	TTTAAA	1 cut(s)	1278
Eam1104I	CTCTTC	2 cut(s)	135, 918
EarI	CTCTTC	2 cut(s)	135, 918
Eco130I	CCWWGG	2 cut(s)	346, 1161
Eco24I	GRGCYC	1 cut(s)	762
Eco31I	GGTCTC	1 cut(s)	1151
Eco32I	GATATC	2 cut(s)	838, 999
Eco47I	GGWCC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	748
EcoRV	GATATC	2 cut(s)	838, 999
EcoT14I	CCWWGG	2 cut(s)	346, 1161
EcoT38I	GRGCYC	1 cut(s)	762
ErhI	CCWWGG	2 cut(s)	346, 1161
FaeI	CATG	3 cut(s)	705, 715, 1398
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 788, 820
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	3 cut(s)	701, 711, 1394
FauI	CCCGC	2 cut(s)	430, 1074
Fnu4HI	GCNGC	5 cut(s)	289, 442, 1202, 1205, 1362
FokI	GGATG	3 cut(s)	244, 269, 1058
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	5 cut(s)	289, 442, 1202, 1205, 1362
FspBI	CTAG	3 cut(s)	242, 587, 594
GluI	GCNGC	5 cut(s)	289, 442, 1202, 1205, 1362
GsaI	CCCAGC	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	2 cut(s)	17, 1225
Hin1II	CATG	3 cut(s)	705, 715, 1398
HindIII	AAGCTT	2 cut(s)	165, 518
HinfI	GANTC	5 cut(s)	799, 830, 986, 1050, 1063
HpaII	CCGG	2 cut(s)	17, 1225
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	9 cut(s)	835, 898, 918, 969, 1009, 1068, 1267, 1342, 1382
Hpy188III	TCNNGA	4 cut(s)	40, 530, 994, 1154
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	1196
HpyAV	CCTTC	5 cut(s)	257, 303, 337, 893, 1032
HpyCH4III	ACNGT	1 cut(s)	974
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	9 cut(s)	100, 158, 183, 324, 444, 619, 783, 1204, 1364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 1213
HpyF3I	CTNAG	6 cut(s)	722, 847, 932, 966, 1055, 1146
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	3 cut(s)	705, 715, 1398
Kzo9I	GATC	5 cut(s)	36, 304, 535, 661, 676
LmnI	GCTCC	3 cut(s)	878, 1165, 1358
Lsp1109I	GCAGC	5 cut(s)	275, 428, 1188, 1216, 1348
LweI	GCATC	1 cut(s)	969
MaeI	CTAG	3 cut(s)	242, 587, 594
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	5 cut(s)	38, 306, 537, 663, 678
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	5 cut(s)	36, 304, 535, 661, 676
MboII	GAAGA	6 cut(s)	122, 351, 545, 808, 905, 1334
MfeI	CAATTG	1 cut(s)	283
MflI	RGATCY	2 cut(s)	36, 535
MhlI	GDGCHC	2 cut(s)	762, 1076
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	5 cut(s)	209, 219, 234, 578, 1102
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	8 cut(s)	51, 314, 546, 582, 938, 1113, 1244, 1277
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	2 cut(s)	17, 1225
MspR9I	CCNGG	2 cut(s)	750, 1225
MunI	CAATTG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	2 cut(s)	164, 1213
NciI	CCSGG	1 cut(s)	1225
NdeII	GATC	5 cut(s)	36, 304, 535, 661, 676
NlaIII	CATG	3 cut(s)	705, 715, 1398
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	705
PasI	CCCWGGG	1 cut(s)	749
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	4 cut(s)	799, 986, 1050, 1063
PkrI	GCNGC	5 cut(s)	290, 443, 1203, 1206, 1363
PleI	GAGTC	1 cut(s)	824
PpsI	GAGTC	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	748
PspPI	GGNCC	2 cut(s)	19, 343
PstI	CTGCAG	2 cut(s)	185, 1206
PsuI	RGATCY	2 cut(s)	36, 535
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	2 cut(s)	471, 1403
RsaNI	GTAC	2 cut(s)	470, 1402
SaqAI	TTAA	8 cut(s)	51, 314, 546, 582, 938, 1113, 1244, 1277
SatI	GCNGC	5 cut(s)	289, 442, 1202, 1205, 1362
Sau3AI	GATC	5 cut(s)	36, 304, 535, 661, 676
Sau96I	GGNCC	2 cut(s)	19, 343
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	2 cut(s)	750, 1225
SduI	GDGCHC	2 cut(s)	762, 1076
SfaNI	GCATC	1 cut(s)	969
SfcI	CTRYAG	2 cut(s)	181, 1202
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	2 cut(s)	40, 1154
SmoI	CTYRAG	2 cut(s)	40, 1154
SsiI	CCGC	3 cut(s)	437, 871, 1081
SspMI	CTAG	3 cut(s)	242, 587, 594
StyD4I	CCNGG	2 cut(s)	748, 1223
StyI	CCWWGG	2 cut(s)	346, 1161
TaaI	ACNGT	1 cut(s)	974
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	3 cut(s)	886, 977, 1095
TatI	WGTACW	1 cut(s)	1401
TfiI	GAWTC	4 cut(s)	799, 986, 1050, 1063
Tru1I	TTAA	8 cut(s)	51, 314, 546, 582, 938, 1113, 1244, 1277
Tru9I	TTAA	8 cut(s)	51, 314, 546, 582, 938, 1113, 1244, 1277
TscAI	CASTG	4 cut(s)	67, 340, 698, 936
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	5 cut(s)	288, 441, 1201, 1204, 1361
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	7 cut(s)	129, 177, 319, 665, 935, 960, 1014
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	4 cut(s)	67, 340, 698, 936
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	3 cut(s)	391, 787, 1335
XceI	RCATGY	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	3 cut(s)	242, 587, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.