Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013509

Physical Location & Seq

Genomic Coordinates Reverse (-)

30403503 .. 30404713

Gene Structure 1211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACAATTGCTTTAACGATCGGAGGAAACGGGTTTTCGGGTCTACCAGGATCGTCGTTTTCTTCATCATCTTCGTCGTTTCGATTAAAAAACAGCAGAAGAAAGAACACGAAGATGCTCAACAGATCAAAAGTCGTTTGTTCTTCTTCATCTTCTGTAATGGATCCGTATAAGACTCTTAAGATCCGACCCGATTCATCTGAATACGAGGTCAAGAAAGCTTTCAGACAACTCGCTAAAAAGTATCATCCTGATGTTTGTAGAGGAAGCAATTGTGGGGTACAGTTTCAGACAATTAACGAAGCTTACGATATTGTGTTGAAGCAAATTAAAAATCAGATGGAAGGGACGGAGGAATTTGAGCCGTTCGATGTATACGACGAGGGATTGAACGGAATGAATGATCCAGATTGCGACACGTGGGAAGAATGGATGGGATGGGAGGGAGCAGGAACCCGTGATTACTCCTCTCACGTTAATCCTTACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

163

Amino Acids

18.33

Weight (kDa)

6.14

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	55 - 108	1.4e-14	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80920
fragaria_vesca	FvH4_6g28480
malus_domestica	MD09G1225800.v1.1 MD17G1224600.v1.1
prunus_persica	Prupe.3G100300_v2.0.a1
pyrus_communis	pycom09g14530 pycom17g22830
rosa_chinensis	RchiOBHm_Chr2g0132701
rosa_laevigata	RLG00000019273
rosa_multiflora	Rmu_ssc0000074.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111720
rosa_rugosa	Rorug02G0306300
rosa_samantha	Rh2AG359400 Rh2BG365700 Rh2CG342500 Rh2DG382400
rosa_wichuraiana	Rw2G029240 Rw3G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	43, 375
AclWI	GGATC	5 cut(s)	58, 158, 171, 178, 398
AcsI	RAATTY	1 cut(s)	356
AcvI	CACGTG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	282
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	322, 391
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	221, 305
AluI	AGCT	2 cut(s)	221, 305
AlwI	GGATC	5 cut(s)	58, 158, 171, 178, 398
ApoI	RAATTY	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	420
BccI	CCATC	3 cut(s)	334, 427, 432
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	48
BfrI	CTTAAG	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	165, 454
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	247, 438, 443
BseRI	GAGGAG	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	361
Bsp143I	GATC	6 cut(s)	18, 50, 125, 163, 183, 403
BspLI	GGNNCC	2 cut(s)	165, 454
BspPI	GGATC	5 cut(s)	58, 158, 171, 178, 398
BspTI	CTTAAG	1 cut(s)	179
BssMI	GATC	6 cut(s)	18, 50, 125, 163, 183, 403
BssNAI	GTATAC	1 cut(s)	376
Bst1107I	GTATAC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	247, 438, 443
BstKTI	GATC	6 cut(s)	21, 53, 128, 166, 186, 406
BstMBI	GATC	6 cut(s)	18, 50, 125, 163, 183, 403
BstMCI	CGRYCG	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	163, 183
BstYI	RGATCY	2 cut(s)	163, 183
BstZ17I	GTATAC	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	247, 438, 443
Csp6I	GTAC	1 cut(s)	281
CviJI	RGCY	3 cut(s)	221, 305, 364
CviKI_1	RGCY	3 cut(s)	221, 305, 364
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	6 cut(s)	20, 52, 127, 165, 185, 405
DpnII	GATC	6 cut(s)	18, 50, 125, 163, 183, 403
Eco72I	CACGTG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	46
FaiI	YATR	2 cut(s)	171, 376
FaqI	GGGAC	1 cut(s)	361
FblI	GTMKAC	2 cut(s)	43, 375
FokI	GGATG	3 cut(s)	234, 445, 450
HindIII	AAGCTT	2 cut(s)	219, 303
HinfI	GANTC	2 cut(s)	175, 194
Hpy166II	GTNNAC	2 cut(s)	44, 376
Hpy188I	TCNGA	6 cut(s)	23, 188, 202, 227, 291, 339
Hpy188III	TCNNGA	3 cut(s)	214, 251, 407
Hpy8I	GTNNAC	2 cut(s)	44, 376
Hpy99I	CGWCG	3 cut(s)	58, 79, 383
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	2 cut(s)	419, 474
HpySE526I	ACGT	2 cut(s)	419, 474
Kzo9I	GATC	6 cut(s)	18, 50, 125, 163, 183, 403
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	5 cut(s)	33, 60, 264, 420, 435
LweI	GCATC	1 cut(s)	105
MaeII	ACGT	2 cut(s)	419, 474
MalI	GATC	6 cut(s)	20, 52, 127, 165, 185, 405
MboI	GATC	6 cut(s)	18, 50, 125, 163, 183, 403
MboII	GAAGA	8 cut(s)	54, 63, 111, 124, 135, 138, 144, 437
MfeI	CAATTG	2 cut(s)	6, 271
MflI	RGATCY	2 cut(s)	163, 183
MluCI	AATT	5 cut(s)	6, 271, 294, 327, 356
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	7 cut(s)	17, 202, 257, 346, 376, 436, 478
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	6 cut(s)	14, 86, 180, 297, 330, 477
MslI	CAYNNNNRTG	2 cut(s)	113, 252
MspCI	CTTAAG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	48
MunI	CAATTG	2 cut(s)	6, 271
MvaI	CCWGG	1 cut(s)	48
NdeII	GATC	6 cut(s)	18, 50, 125, 163, 183, 403
NlaIV	GGNNCC	2 cut(s)	165, 454
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 375
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	194
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	420
PmlI	CACGTG	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	46
PspCI	CACGTG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	165, 454
PsuI	RGATCY	2 cut(s)	163, 183
PvuI	CGATCG	1 cut(s)	21
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	113, 252
SaqAI	TTAA	6 cut(s)	14, 86, 180, 297, 330, 477
Sau3AI	GATC	6 cut(s)	18, 50, 125, 163, 183, 403
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	5 cut(s)	213, 223, 307, 422, 477
SfaNI	GCATC	1 cut(s)	105
SmiMI	CAYNNNNRTG	2 cut(s)	113, 252
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	5 cut(s)	6, 271, 294, 327, 356
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	2 cut(s)	422, 477
TaqI	TCGA	2 cut(s)	82, 369
TasI	AATT	5 cut(s)	6, 271, 294, 327, 356
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	6 cut(s)	14, 86, 180, 297, 330, 477
Tru9I	TTAA	6 cut(s)	14, 86, 180, 297, 330, 477
TspDTI	ATGAA	4 cut(s)	54, 138, 186, 413
TspGWI	ACGGA	3 cut(s)	156, 365, 408
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	43, 375
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.