Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013509

Physical Location & Seq

Genomic Coordinates Reverse (-)

14181057 .. 14184580

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14530.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATATTTTTTTTGTACTTTACCCAAAAAACTTTTTTTTTCCTTCCTCCTTTTTTTCCTCTTCTTCTTCTTCTTCCTCCTCCTTCTCCTTCTTCCTCTTCCTTTTCTTCCTCTTCTTCTTCTTCCTCCTTCTCCTTCTCCCTTCTTCTTCTTCCGCGCCGATGGCCGCGACCGCAAGGGGAATTTTTTTTTTTTCCCCTTCCTCCTTGTTTTCCTCTTATTCTTCTTCTTCTTCCTTCTCCTCCTCCTTCTCCTTCTTGTTCTTCTACAGGGGGTTGTTGGGTTTTCAAATTTTTTTTTTTTTTTTTTGGGTTTTGGGTTTTTTTTTTTTTTTTTTTTTTGAATAGCCAGAGGATTATTGGGTTTTCTGAGATTTTGGGAATGGCGTGTGTTGGAGCAGGTGTGATTGGGGGCAATGGGTCGTCCTGGAATCTGTTCAAGGACAAGGCAAGGAAGAAGAAGATGGTGAATAATAATAAGAGGGTGATGGTTTCTTGTGTTGCTTCTTCCGTGATCGATCCTTACCGGACTTTGAAGATTCAACCCGGTGCCTCTGAATCTGAGGTCAGGAAGGCGTTTAGACAACTTGCCTTGAAGTATCATCCAGACGTATGCAGAGGAAACAATTGTGGAGTTGAGTTTCACCAGATCAATGAAGCCTATGATATTGTTATGAGCAATTTGAGAGGAGAAACGACGACTCCATTGCAGATGTATGAGACGTACGATGAAGGGGATGAAGAGCCGATGAGGGGAATGAACGATCCGGATTGGGACATGTGGGAGGAATGGATGGGATGGGAAGGAGCTGGAATTAGAGACTACACATCTCACATTAATCCTTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

284

Amino Acids

32.43

Weight (kDa)

6.82

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80920
fragaria_vesca	FvH4_6g28480
malus_domestica	MD09G1225800.v1.1 MD17G1224600.v1.1
prunus_persica	Prupe.3G100300_v2.0.a1
pyrus_communis	pycom09g14530 pycom17g22830
rosa_chinensis	RchiOBHm_Chr2g0132701
rosa_laevigata	RLG00000019273
rosa_multiflora	Rmu_ssc0000074.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111720
rosa_rugosa	Rorug02G0306300
rosa_samantha	Rh2AG359400 Rh2BG365700 Rh2CG342500 Rh2DG382400
rosa_wichuraiana	Rw2G029240 Rw3G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	548
AccII	CGCG	2 cut(s)	157, 169
AccIII	TCCGGA	1 cut(s)	766
AciI	CCGC	3 cut(s)	155, 167, 173
AclWI	GGATC	2 cut(s)	512, 758
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	182, 290
AfaI	GTAC	2 cut(s)	17, 725
AfiI	CCNNNNNNNGG	1 cut(s)	752
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	6 cut(s)	289, 343, 439, 535, 542, 595
AjnI	CCWGG	1 cut(s)	425
AluBI	AGCT	1 cut(s)	809
AluI	AGCT	1 cut(s)	809
Alw26I	GTCTC	2 cut(s)	713, 813
AlwI	GGATC	2 cut(s)	512, 758
Aor13HI	TCCGGA	1 cut(s)	766
AoxI	GGCC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	182, 290
AseI	ATTAAT	1 cut(s)	837
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	478, 496, 635
BanI	GGYRCC	1 cut(s)	548
BccI	CCATC	5 cut(s)	156, 457, 481, 787, 792
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BciT130I	CCWGG	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	713, 813
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	427, 546
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	2 cut(s)	427, 546
BpuMI	CCSGG	1 cut(s)	546
Bsa29I	ATCGAT	1 cut(s)	516
BsaWI	WCCGGW	2 cut(s)	525, 766
BsaXI	ACNNNNNCTCC	4 cut(s)	387, 417, 685, 715
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse3DI	GCAATG	2 cut(s)	421, 704
BseAI	TCCGGA	1 cut(s)	766
BseBI	CCWGG	1 cut(s)	427
BseCI	ATCGAT	1 cut(s)	516
BseGI	GGATG	4 cut(s)	601, 742, 798, 803
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMI	GCAATG	2 cut(s)	421, 704
BseMII	CTCAG	2 cut(s)	360, 552
BseRI	GAGGAG	4 cut(s)	69, 231, 234, 702
Bsh1236I	CGCG	2 cut(s)	157, 169
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	548
BshVI	ATCGAT	1 cut(s)	516
BsiEI	CGRYCG	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	526, 546, 767
BsiWI	CGTACG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	2 cut(s)	713, 813
BsmBI	CGTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	1 cut(s)	166
Bsp13I	TCCGGA	1 cut(s)	766
Bsp143I	GATC	4 cut(s)	513, 517, 648, 763
BspACI	CCGC	3 cut(s)	155, 167, 173
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	361, 553
BspDI	ATCGAT	1 cut(s)	516
BspEI	TCCGGA	1 cut(s)	766
BspFNI	CGCG	2 cut(s)	157, 169
BspLI	GGNNCC	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	512, 758
BspQI	GCTCTTC	1 cut(s)	735
BspT107I	GGYRCC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	421, 704
BssMI	GATC	4 cut(s)	513, 517, 648, 763
Bst2UI	CCWGG	1 cut(s)	427
Bst6I	CTCTTC	4 cut(s)	66, 103, 118, 735
BstDEI	CTNAG	2 cut(s)	369, 561
BstF5I	GGATG	4 cut(s)	601, 742, 798, 803
BstFNI	CGCG	2 cut(s)	157, 169
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	4 cut(s)	516, 520, 651, 766
BstMAI	GTCTC	2 cut(s)	713, 813
BstMBI	GATC	4 cut(s)	513, 517, 648, 763
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 172
BstNI	CCWGG	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	2 cut(s)	425, 544
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	2 cut(s)	157, 169
Bsu15I	ATCGAT	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	166
BsuTUI	ATCGAT	1 cut(s)	516
BtsCI	GGATG	4 cut(s)	601, 742, 798, 803
BveI	ACCTGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	16, 724
CviAII	CATG	1 cut(s)	778
CviJI	RGCY	5 cut(s)	166, 348, 659, 745, 809
CviKI_1	RGCY	5 cut(s)	166, 348, 659, 745, 809
CviQI	GTAC	2 cut(s)	16, 724
DdeI	CTNAG	2 cut(s)	369, 561
DpnI	GATC	4 cut(s)	515, 519, 650, 765
DpnII	GATC	4 cut(s)	513, 517, 648, 763
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	4 cut(s)	66, 103, 118, 735
EarI	CTCTTC	4 cut(s)	66, 103, 118, 735
EcoRII	CCWGG	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	713
FaeI	CATG	1 cut(s)	781
FaiI	YATR	6 cut(s)	613, 663, 674, 717, 779, 846
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	1 cut(s)	777
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	4 cut(s)	588, 749, 805, 810
Fsp4HI	GCNGC	1 cut(s)	167
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	3 cut(s)	526, 546, 767
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	781
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	430, 538, 557, 700
HpaII	CCGG	3 cut(s)	526, 546, 767
HphI	GGTGA	3 cut(s)	478, 496, 635
Hpy188I	TCNGA	3 cut(s)	370, 556, 562
Hpy188III	TCNNGA	3 cut(s)	568, 605, 767
Hpy99I	CGWCG	1 cut(s)	700
HpyCH4IV	ACGT	2 cut(s)	609, 722
HpyCH4V	TGCA	2 cut(s)	615, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 172
HpyF3I	CTNAG	2 cut(s)	369, 561
HpySE526I	ACGT	2 cut(s)	609, 722
Hsp92II	CATG	1 cut(s)	781
HspAI	GCGC	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	513, 517, 648, 763
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	2 cut(s)	395, 806
MaeII	ACGT	2 cut(s)	609, 722
MalI	GATC	4 cut(s)	515, 519, 650, 765
MboI	GATC	4 cut(s)	513, 517, 648, 763
MfeI	CAATTG	1 cut(s)	625
MluCI	AATT	5 cut(s)	182, 290, 625, 679, 813
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	373
MroI	TCCGGA	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	1 cut(s)	837
MspI	CCGG	3 cut(s)	526, 546, 767
MspR9I	CCNGG	2 cut(s)	427, 546
MunI	CAATTG	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	427
MvnI	CGCG	2 cut(s)	157, 169
MwoI	GCNNNNNNNGC	2 cut(s)	163, 172
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	4 cut(s)	513, 517, 648, 763
NlaIII	CATG	1 cut(s)	781
NlaIV	GGNNCC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	781
PaqCI	CACCTGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	3 cut(s)	430, 538, 557
Pfl23II	CGTACG	1 cut(s)	723
PfoI	TCCNGGA	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PscI	ACATGT	1 cut(s)	777
PshBI	ATTAAT	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	425
PspLI	CGTACG	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	550
RsaI	GTAC	2 cut(s)	17, 725
RsaNI	GTAC	2 cut(s)	16, 724
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	1 cut(s)	837
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	4 cut(s)	513, 517, 648, 763
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	427, 546
SetI	ASST	5 cut(s)	403, 567, 612, 725, 811
SfcI	CTRYAG	1 cut(s)	267
Sse9I	AATT	5 cut(s)	182, 290, 625, 679, 813
SsiI	CCGC	3 cut(s)	155, 167, 173
StyD4I	CCNGG	2 cut(s)	425, 544
TaiI	ACGT	2 cut(s)	612, 725
TaqI	TCGA	1 cut(s)	516
TasI	AATT	5 cut(s)	182, 290, 625, 679, 813
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	3 cut(s)	430, 538, 557
Tru1I	TTAA	1 cut(s)	837
Tru9I	TTAA	1 cut(s)	837
TspDTI	ATGAA	4 cut(s)	669, 744, 753, 773
TspGWI	ACGGA	1 cut(s)	499
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	2 cut(s)	182, 290
XceI	RCATGY	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.