Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013509

Physical Location & Seq

Genomic Coordinates Reverse (-)

7687432 .. 7689391

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G100300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTGCTGTGGCTGCTGGTGTTATTGGGGGTAATGGGTCTTCTTGGAATCTGTTTAAGGACAAGCCCAGGAAGAAGAAGACGGTGAATAAGGTTATGGTGTCTTGTGTTTATTCTTCTGTGATGGATCCTTACCAGACTTTGAAGATCCAACCTGGTGCCTCTGAATCTGAGGTCAGGAAGGCATTCAGACAACTTGCCTTGAAGTATCATCCAGACGTATGCAGAGGAAACAATTGTGGAGTTCAGTTTCACCAGATCAATGAAGCTTATGATATTGTTATGAGCAATTTGAGAGGAGAATCCACTCCATCTCCGATGTATGAGACGTACGATGAAGGAGTTGATGAGCCGATGAGAGGAATGAACGATCCGGATTGGGACATGTGGGAGGAATGGATGGGATGGGAAGGAGCTGGAATCAGGGACTACACATCTCACATTAATCCTTATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

153

Amino Acids

17.22

Weight (kDa)

5.35

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80920
fragaria_vesca	FvH4_6g28480
malus_domestica	MD09G1225800.v1.1 MD17G1224600.v1.1
prunus_persica	Prupe.3G100300_v2.0.a1
pyrus_communis	pycom09g14530 pycom17g22830
rosa_chinensis	RchiOBHm_Chr2g0132701
rosa_laevigata	RLG00000019273
rosa_multiflora	Rmu_ssc0000074.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111720
rosa_rugosa	Rorug02G0306300
rosa_samantha	Rh2AG359400 Rh2BG365700 Rh2CG342500 Rh2DG382400
rosa_wichuraiana	Rw2G029240 Rw3G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	373
AclWI	GGATC	4 cut(s)	122, 135, 142, 365
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	145, 205
AjnI	CCWGG	2 cut(s)	68, 154
AluBI	AGCT	2 cut(s)	269, 416
AluI	AGCT	2 cut(s)	269, 416
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	4 cut(s)	122, 135, 142, 365
Aor13HI	TCCGGA	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	5, 14
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	97, 245
BamHI	GGATCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	158
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BbsI	GAAGAC	2 cut(s)	33, 86
BccI	CCATC	4 cut(s)	118, 319, 394, 399
BciT130I	CCWGG	2 cut(s)	70, 156
BcoDI	GTCTC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	6, 15
BlsI	GCNGC	2 cut(s)	7, 16
Bme1390I	CCNGG	2 cut(s)	70, 156
BmiI	GGNNCC	2 cut(s)	129, 160
BmrFI	CCNGG	2 cut(s)	70, 156
BpiI	GAAGAC	2 cut(s)	33, 86
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
BseAI	TCCGGA	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	70, 156
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	3 cut(s)	211, 405, 410
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	374
BsiWI	CGTACG	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	395, 440
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	320
BsmBI	CGTCTC	1 cut(s)	320
BsmFI	GGGAC	2 cut(s)	395, 440
BsmI	GAATGC	1 cut(s)	185
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	127, 147, 258, 370
BspCNI	CTCAG	1 cut(s)	163
BspEI	TCCGGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	129, 160
BspPI	GGATC	4 cut(s)	122, 135, 142, 365
BspT107I	GGYRCC	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	127, 147, 258, 370
Bst2UI	CCWGG	2 cut(s)	70, 156
Bst4CI	ACNGT	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	211, 405, 410
BstKTI	GATC	4 cut(s)	130, 150, 261, 373
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	127, 147, 258, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 14
BstNI	CCWGG	2 cut(s)	70, 156
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	68, 154
BstV2I	GAAGAC	2 cut(s)	33, 86
BstX2I	RGATCY	2 cut(s)	127, 147
BstYI	RGATCY	2 cut(s)	127, 147
BtsCI	GGATG	3 cut(s)	211, 405, 410
CsiI	ACCWGGT	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	6 cut(s)	5, 14, 67, 269, 352, 416
CviKI_1	RGCY	6 cut(s)	5, 14, 67, 269, 352, 416
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	129, 149, 260, 372
DpnII	GATC	4 cut(s)	127, 147, 258, 370
EcoRII	CCWGG	2 cut(s)	68, 154
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	1 cut(s)	388
FaiI	YATR	7 cut(s)	98, 223, 273, 284, 324, 386, 453
FaqI	GGGAC	2 cut(s)	395, 440
FatI	CATG	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	6, 15
FokI	GGATG	3 cut(s)	198, 412, 417
Fsp4HI	GCNGC	2 cut(s)	6, 15
GluI	GCNGC	2 cut(s)	6, 15
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	4 cut(s)	49, 167, 302, 420
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	2 cut(s)	97, 245
Hpy188I	TCNGA	4 cut(s)	166, 172, 191, 318
Hpy188III	TCNNGA	3 cut(s)	178, 215, 374
HpyAV	CCTTC	3 cut(s)	175, 332, 404
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	219, 329
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 14
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	219, 329
Hsp92II	CATG	1 cut(s)	388
Kpn2I	TCCGGA	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	127, 147, 258, 370
LmnI	GCTCC	1 cut(s)	413
MabI	ACCWGGT	1 cut(s)	154
MaeII	ACGT	2 cut(s)	219, 329
MalI	GATC	4 cut(s)	129, 149, 260, 372
MboI	GATC	4 cut(s)	127, 147, 258, 370
MboII	GAAGA	6 cut(s)	33, 85, 88, 91, 108, 157
MfeI	CAATTG	1 cut(s)	235
MflI	RGATCY	2 cut(s)	127, 147
MluCI	AATT	2 cut(s)	235, 289
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	6 cut(s)	166, 172, 221, 290, 353, 385
MroI	TCCGGA	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	3 cut(s)	57, 444, 457
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	70, 156
MunI	CAATTG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	70, 156
MwoI	GCNNNNNNNGC	2 cut(s)	11, 14
NdeII	GATC	4 cut(s)	127, 147, 258, 370
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	129, 160
NspI	RCATGY	1 cut(s)	388
PciI	ACATGT	1 cut(s)	384
PctI	GAATGC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	4 cut(s)	49, 167, 302, 420
Pfl23II	CGTACG	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	7, 16
PscI	ACATGT	1 cut(s)	384
PshBI	ATTAAT	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	68, 154
PspGI	CCWGG	2 cut(s)	68, 154
PspLI	CGTACG	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	129, 160
PsuI	RGATCY	2 cut(s)	127, 147
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	57, 444, 457
SatI	GCNGC	2 cut(s)	6, 15
Sau3AI	GATC	4 cut(s)	127, 147, 258, 370
ScrFI	CCNGG	2 cut(s)	70, 156
SetI	ASST	7 cut(s)	96, 157, 177, 222, 271, 332, 418
SexAI	ACCWGGT	1 cut(s)	154
Sse9I	AATT	2 cut(s)	235, 289
StyD4I	CCNGG	2 cut(s)	68, 154
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	222, 332
TasI	AATT	2 cut(s)	235, 289
TfiI	GAWTC	4 cut(s)	49, 167, 302, 420
Tru1I	TTAA	3 cut(s)	57, 444, 457
Tru9I	TTAA	3 cut(s)	57, 444, 457
TseI	GCWGC	2 cut(s)	5, 14
TspDTI	ATGAA	3 cut(s)	279, 351, 380
VspI	ATTAAT	1 cut(s)	444
XceI	RCATGY	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.