Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013509

Physical Location & Seq

Genomic Coordinates Forward (+)

21945009 .. 21946985

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTGCTGCTGCTGCTGGTGTTATTGGAGGAAATGGGTCTTCTTGGATTAACTCGTTTAAGGATAAGTCTTCGAGGAAAAAGAAGACTGTGAACCGGGTTATGGTTTCTTGTGTTTCTTCTAATGTGATGGATCCGTATCAGACTTTGAGGATCCGACCCGGTGCCTCTGAATCTGAGGTCCGGAAGGCTTTCAGACAGCTTGCCTTGCAGTATCATCCAGATGTGTGCAGGGGAAACAATTGTGGAGTTCAGTTTCACGAAATCAACGAGGCTTATGATATTGTTATGAGCAACTTGAGAGACGAAACGACTCCAATACAGATGTATGAGACATATGATGAAGGAGAGGATGATTCGATGAGAGGAATGAACGATCCAGATTACGATATGTGGGAGGAATGGATGGGATGGGAAGGAGCTGGTATTAGGGACTACACATCTCATATAAATCCTTACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

155

Amino Acids

17.5

Weight (kDa)

4.92

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	45 - 97	4.6e-15	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80920
fragaria_vesca	FvH4_6g28480
malus_domestica	MD09G1225800.v1.1 MD17G1224600.v1.1
prunus_persica	Prupe.3G100300_v2.0.a1
pyrus_communis	pycom09g14530 pycom17g22830
rosa_chinensis	RchiOBHm_Chr2g0132701
rosa_laevigata	RLG00000019273
rosa_multiflora	Rmu_ssc0000074.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111720
rosa_rugosa	Rorug02G0306300
rosa_samantha	Rh2AG359400 Rh2BG365700 Rh2CG342500 Rh2DG382400
rosa_wichuraiana	Rw2G029240 Rw3G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccIII	TCCGGA	1 cut(s)	183
AclWI	GGATC	5 cut(s)	128, 141, 148, 161, 371
AfiI	CCNNNNNNNGG	1 cut(s)	103
AluBI	AGCT	2 cut(s)	202, 422
AluI	AGCT	2 cut(s)	202, 422
Alw26I	GTCTC	2 cut(s)	297, 326
AlwI	GGATC	5 cut(s)	128, 141, 148, 161, 371
Aor13HI	TCCGGA	1 cut(s)	183
ApeKI	GCWGC	4 cut(s)	5, 8, 11, 14
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	2 cut(s)	98, 162
AvaII	GGWCC	1 cut(s)	181
BamHI	GGATCC	2 cut(s)	133, 153
BanI	GGYRCC	1 cut(s)	164
BbsI	GAAGAC	3 cut(s)	33, 63, 92
BccI	CCATC	3 cut(s)	124, 400, 405
BcnI	CCSGG	2 cut(s)	98, 162
BcoDI	GTCTC	2 cut(s)	297, 326
BisI	GCNGC	4 cut(s)	6, 9, 12, 15
BlsI	GCNGC	4 cut(s)	7, 10, 13, 16
Bme1390I	CCNGG	2 cut(s)	98, 162
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	135, 155, 166
BmrFI	CCNGG	2 cut(s)	98, 162
BpiI	GAAGAC	3 cut(s)	33, 63, 92
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	2 cut(s)	98, 162
BsaBI	GATNNNNATC	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	183
BseGI	GGATG	4 cut(s)	217, 358, 411, 416
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	3 cut(s)	97, 162, 184
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	2 cut(s)	297, 326
BsmBI	CGTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	133, 153, 376
BspCNI	CTCAG	1 cut(s)	169
BspEI	TCCGGA	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	135, 155, 166
BspPI	GGATC	5 cut(s)	128, 141, 148, 161, 371
BspT107I	GGYRCC	1 cut(s)	164
BssMI	GATC	3 cut(s)	133, 153, 376
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	4 cut(s)	217, 358, 411, 416
BstKTI	GATC	3 cut(s)	136, 156, 379
BstMAI	GTCTC	2 cut(s)	297, 326
BstMBI	GATC	3 cut(s)	133, 153, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 208
BstSCI	CCNGG	2 cut(s)	96, 160
BstV2I	GAAGAC	3 cut(s)	33, 63, 92
BstX2I	RGATCY	2 cut(s)	133, 153
BstYI	RGATCY	2 cut(s)	133, 153
BtsCI	GGATG	4 cut(s)	217, 358, 411, 416
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	181
CviJI	RGCY	5 cut(s)	5, 191, 202, 275, 422
CviKI_1	RGCY	5 cut(s)	5, 191, 202, 275, 422
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	135, 155, 378
DpnII	GATC	3 cut(s)	133, 153, 376
Eco47I	GGWCC	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	297
FaiI	YATR	9 cut(s)	104, 279, 290, 330, 337, 339, 392, 447, 449
FaqI	GGGAC	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 15
FokI	GGATG	4 cut(s)	204, 365, 418, 423
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 15
GluI	GCNGC	4 cut(s)	6, 9, 12, 15
HapII	CCGG	3 cut(s)	97, 162, 184
HinfI	GANTC	3 cut(s)	173, 313, 356
HpaII	CCGG	3 cut(s)	97, 162, 184
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	5 cut(s)	144, 158, 172, 178, 197
Hpy188III	TCNNGA	4 cut(s)	184, 221, 260, 380
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	181, 338, 410
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	211, 231
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 208
HpyF3I	CTNAG	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	133, 153, 376
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	8 cut(s)	3, 110, 175, 197, 217, 234, 393, 408
MalI	GATC	3 cut(s)	135, 155, 378
MboI	GATC	3 cut(s)	133, 153, 376
MboII	GAAGA	4 cut(s)	33, 63, 97, 111
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	2 cut(s)	133, 153
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	9 cut(s)	23, 69, 144, 172, 178, 265, 343, 359, 391
MroI	TCCGGA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	3 cut(s)	51, 60, 463
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	3 cut(s)	97, 162, 184
MspR9I	CCNGG	2 cut(s)	98, 162
MunI	CAATTG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 208
NciI	CCSGG	2 cut(s)	98, 162
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	3 cut(s)	133, 153, 376
NlaIV	GGNNCC	3 cut(s)	135, 155, 166
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	173, 356
PkrI	GCNGC	4 cut(s)	7, 10, 13, 16
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	135, 155, 166
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	133, 153
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	51, 60, 463
SatI	GCNGC	4 cut(s)	6, 9, 12, 15
Sau3AI	GATC	3 cut(s)	133, 153, 376
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	98, 162
SetI	ASST	3 cut(s)	183, 204, 424
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	96, 160
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	74, 359
TasI	AATT	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	173, 356
Tru1I	TTAA	3 cut(s)	51, 60, 463
Tru9I	TTAA	3 cut(s)	51, 60, 463
TseI	GCWGC	4 cut(s)	5, 8, 11, 14
TspDTI	ATGAA	2 cut(s)	357, 386
TspGWI	ACGGA	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.