Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013509

Physical Location & Seq

Genomic Coordinates Reverse (-)

21225261 .. 21227119

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTTGCGTTGGAGCTGGTTTGATCGGGGGCAGTGGGTCGTCCTGGAATCTGTTGAAGGATAATAAGGCGAGGAGGAAGAAGATGGTGAATGATAAGAGGGGGATGGTTTCTTGTGTTGCTTCTTCTTCTTCTGTGATGGATCCTTACCGGACCTTGAAGATTCAACCTGGTGCCTCTGAATCTGAGGTCAGGAAGGCTTTCAGACAACTTGCTTTGAAGTATCATCCAGATGTATGCAGAGGAAACAATTGTAGAGTTCAGTTTCACCAGATCAATGAAGCCTATGATATTGTCATGAGCGATTTGAGAGGAGAAACGACGACGACTACTCCATCGCAGATGTATGAGACGTACGACGAAGGGGATGACGAGCCGATGAGGGGAATGAACGATCCAGATTGGGACATGTGGGAGGAATGGATGGGATGGGAAGGAGCTGGAATTAGGGACTACACATCTCACATTAATCCTTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

161

Amino Acids

18.14

Weight (kDa)

5.38

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80920
fragaria_vesca	FvH4_6g28480
malus_domestica	MD09G1225800.v1.1 MD17G1224600.v1.1
prunus_persica	Prupe.3G100300_v2.0.a1
pyrus_communis	pycom09g14530 pycom17g22830
rosa_chinensis	RchiOBHm_Chr2g0132701
rosa_laevigata	RLG00000019273
rosa_multiflora	Rmu_ssc0000074.1_g000011
rosa_roxburghii	Rroxscaffold_2G00111720
rosa_rugosa	Rorug02G0306300
rosa_samantha	Rh2AG359400 Rh2BG365700 Rh2CG342500 Rh2DG382400
rosa_wichuraiana	Rw2G029240 Rw3G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AclWI	GGATC	3 cut(s)	137, 150, 389
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	4 cut(s)	58, 160, 167, 220
AjnI	CCWGG	2 cut(s)	44, 169
AluBI	AGCT	2 cut(s)	17, 440
AluI	AGCT	2 cut(s)	17, 440
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	137, 150, 389
AseI	ATTAAT	1 cut(s)	468
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	100, 260
AvaII	GGWCC	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	173
BccI	CCATC	6 cut(s)	79, 100, 133, 343, 418, 423
BciT130I	CCWGG	2 cut(s)	46, 171
BcoDI	GTCTC	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	46, 171
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	144, 175
BmrFI	CCNGG	2 cut(s)	46, 171
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	46, 171
BseGI	GGATG	5 cut(s)	111, 226, 373, 429, 434
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	88, 327
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	151
BsiWI	CGTACG	1 cut(s)	354
BslFI	GGGAC	2 cut(s)	419, 464
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsmFI	GGGAC	2 cut(s)	419, 464
Bsp143I	GATC	4 cut(s)	24, 142, 273, 394
BspCNI	CTCAG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	144, 175
BspPI	GGATC	3 cut(s)	137, 150, 389
BspT107I	GGYRCC	1 cut(s)	173
BssMI	GATC	4 cut(s)	24, 142, 273, 394
Bst2UI	CCWGG	2 cut(s)	46, 171
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	5 cut(s)	111, 226, 373, 429, 434
BstKTI	GATC	4 cut(s)	27, 145, 276, 397
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	4 cut(s)	24, 142, 273, 394
BstNI	CCWGG	2 cut(s)	46, 171
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	44, 169
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	5 cut(s)	111, 226, 373, 429, 434
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	153
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	298, 409
CviJI	RGCY	6 cut(s)	5, 17, 200, 284, 376, 440
CviKI_1	RGCY	6 cut(s)	5, 17, 200, 284, 376, 440
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	4 cut(s)	26, 144, 275, 396
DpnII	GATC	4 cut(s)	24, 142, 273, 394
Eco47I	GGWCC	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	44, 169
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	2 cut(s)	301, 412
FaiI	YATR	6 cut(s)	238, 288, 299, 348, 410, 477
FaqI	GGGAC	2 cut(s)	419, 464
FatI	CATG	2 cut(s)	297, 408
FokI	GGATG	5 cut(s)	118, 213, 380, 436, 441
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	2 cut(s)	301, 412
HinfI	GANTC	3 cut(s)	49, 163, 182
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	2 cut(s)	100, 260
Hpy188I	TCNGA	3 cut(s)	181, 187, 206
Hpy188III	TCNNGA	4 cut(s)	193, 230, 298, 398
Hpy99I	CGWCG	3 cut(s)	325, 328, 362
HpyAV	CCTTC	4 cut(s)	52, 190, 356, 428
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	301, 412
Kzo9I	GATC	4 cut(s)	24, 142, 273, 394
LmnI	GCTCC	2 cut(s)	14, 437
MabI	ACCWGGT	1 cut(s)	169
MaeII	ACGT	1 cut(s)	353
MalI	GATC	4 cut(s)	26, 144, 275, 396
MboI	GATC	4 cut(s)	24, 142, 273, 394
MboII	GAAGA	6 cut(s)	91, 94, 117, 120, 123, 172
MfeI	CAATTG	1 cut(s)	250
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	2 cut(s)	250, 444
MnlI	CCTC	9 cut(s)	66, 69, 93, 181, 187, 236, 305, 375, 409
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	46, 171
MunI	CAATTG	1 cut(s)	250
MvaI	CCWGG	2 cut(s)	46, 171
NdeII	GATC	4 cut(s)	24, 142, 273, 394
NlaIII	CATG	2 cut(s)	301, 412
NlaIV	GGNNCC	2 cut(s)	144, 175
NspI	RCATGY	1 cut(s)	412
PagI	TCATGA	1 cut(s)	297
PciI	ACATGT	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	3 cut(s)	49, 163, 182
Pfl23II	CGTACG	1 cut(s)	354
PfoI	TCCNGGA	1 cut(s)	44
PscI	ACATGT	1 cut(s)	408
PshBI	ATTAAT	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	44, 169
PspGI	CCWGG	2 cut(s)	44, 169
PspLI	CGTACG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	144, 175
PspPI	GGNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	24, 142, 273, 394
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	46, 171
SetI	ASST	6 cut(s)	19, 158, 172, 192, 356, 442
SexAI	ACCWGGT	1 cut(s)	169
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	250, 444
StyD4I	CCNGG	2 cut(s)	44, 169
TaiI	ACGT	1 cut(s)	356
TasI	AATT	2 cut(s)	250, 444
TfiI	GAWTC	3 cut(s)	49, 163, 182
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	294, 404
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	153
VspI	ATTAAT	1 cut(s)	468
XceI	RCATGY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.